Times Reported Time consuming queries #1

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[ User: editeu - Total duration: 8m43s - Times executed: 8 ]

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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;

Date: 2024-03-21 14:10:55
Duration: 2m55s
Database: ctddev51
User: editeu
Bind query: yes

select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;

Date: 2024-03-21 14:10:10
Duration: 2m10s
Database: ctddev51
User: editeu
Bind query: yes

select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 2 and t.id = l.TERM_ID;

Date: 2024-03-21 14:09:33
Duration: 1m32s
Database: ctddev51
User: editeu
Bind query: yes

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Times Reported Time consuming queries #2

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SELECT DISTINCT er.id, r.nm, er.object_type_id, t.id, er.term_nm, t.nm_html, er.term_acc_txt, er.term_acc_db_id, er.qty, er.note, er.age, er.age_range, er.age_uom_id, er.age_qualifier_id, er.gender_id, au.nm, aq.nm, g.nm, g.nm_html FROM EDIT.EXP_RECEPTOR er INNER JOIN EDIT.EXPOSURE e ON e.exp_receptor_id = er.id INNER JOIN edit.RECEPTOR r ON er.receptor_id = r.id LEFT OUTER JOIN PUB2.AGE_UOM au ON er.age_uom_id = au.id LEFT OUTER JOIN PUB2.AGE_QUALIFIER aq ON er.age_qualifier_id = aq.id LEFT OUTER JOIN PUB2.GENDER g ON er.gender_id = g.id LEFT OUTER JOIN PUB2.TERM t ON er.term_acc_txt = t.acc_txt AND er.object_type_id = t.object_type_id WHERE e.reference_acc_txt NOT IN ('11874814', '12819278', '14527848', '12003754', '12948893');

Date: 2024-03-21 14:56:45
Duration: 10s403ms

--select * from exposure where exp_event_id=907 --select count(*) from edit.exp_receptor SELECT DISTINCT er.id, r.nm, er.object_type_id, t.id, er.term_nm, t.nm_html, er.term_acc_txt, er.term_acc_db_id, er.qty, er.note, er.age, er.age_range, er.age_uom_id, er.age_qualifier_id, er.gender_id, au.nm, aq.nm, g.nm, g.nm_html FROM EDIT.EXP_RECEPTOR er INNER JOIN EDIT.EXPOSURE e ON e.exp_receptor_id = er.id INNER JOIN edit.RECEPTOR r ON er.receptor_id = r.id LEFT OUTER JOIN PUB2.AGE_UOM au ON er.age_uom_id = au.id LEFT OUTER JOIN PUB2.AGE_QUALIFIER aq ON er.age_qualifier_id = aq.id LEFT OUTER JOIN PUB2.GENDER g ON er.gender_id = g.id LEFT OUTER JOIN PUB2.TERM t ON er.term_acc_txt = t.acc_txt AND er.object_type_id = t.object_type_id WHERE e.reference_acc_txt NOT IN ('11874814', '12819278', '14527848', '12003754', '12948893');

Date: 2024-03-21 14:44:28
Duration: 8s360ms

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Times Reported Time consuming queries #3

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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and chemTerm.id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and geneTerm.id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5)))) and diseaseTerm.id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'NECROSIS'))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;

Date: 2024-03-21 05:49:16
Duration: 15s117ms
Bind query: yes

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Times Reported Time consuming queries #4

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--select * from exposure where exp_event_id=907 --select count(*) from edit.exp_receptor SELECT DISTINCT er.id, r.nm, er.object_type_id, t.id, er.term_nm, t.nm_html, er.term_acc_txt, er.term_acc_db_id, er.qty, er.note, er.age, er.age_range, er.age_uom_id, er.age_qualifier_id, er.gender_id, au.nm, aq.nm, g.nm, g.nm_html FROM EDIT.EXP_RECEPTOR er INNER JOIN edit.RECEPTOR r ON er.receptor_id = r.id LEFT OUTER JOIN PUB2.AGE_UOM au ON er.age_uom_id = au.id LEFT OUTER JOIN PUB2.AGE_QUALIFIER aq ON er.age_qualifier_id = aq.id LEFT OUTER JOIN PUB2.GENDER g ON er.gender_id = g.id LEFT OUTER JOIN PUB2.TERM t ON er.term_acc_txt = t.acc_txt AND er.object_type_id = t.object_type_id;

Date: 2024-03-21 14:38:59
Duration: 12s538ms

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Times Reported Time consuming queries #5

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select * from edit.exposure;

Date: 2024-03-21 16:06:39
Duration: 9s965ms

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Times Reported Time consuming queries #6

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--select * from exposure where exp_event_id=907 --select count(*) from edit.exp_receptor SELECT DISTINCT er.id, r.nm, er.object_type_id, t.id, er.term_nm, t.nm_html, er.term_acc_txt, er.term_acc_db_id, er.qty, er.note, er.age, er.age_range, er.age_uom_id, er.age_qualifier_id, er.gender_id, au.nm, aq.nm, g.nm, g.nm_html FROM EDIT.EXP_RECEPTOR er INNER JOIN EDIT.EXPOSURE e ON e.exp_receptor_id = er.id INNER JOIN edit.RECEPTOR r ON er.receptor_id = r.id LEFT OUTER JOIN PUB2.AGE_UOM au ON er.age_uom_id = au.id LEFT OUTER JOIN PUB2.AGE_QUALIFIER aq ON er.age_qualifier_id = aq.id LEFT OUTER JOIN PUB2.GENDER g ON er.gender_id = g.id LEFT OUTER JOIN PUB2.TERM t ON er.term_acc_txt = t.acc_txt AND er.object_type_id = t.object_type_id;

Date: 2024-03-21 14:43:31
Duration: 9s770ms

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Times Reported Time consuming queries #7

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SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1275443')) ORDER BY r.sort_txt LIMIT 50;

Date: 2024-03-21 05:47:58
Duration: 2s353ms
Bind query: yes

SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1275443')) ORDER BY r.sort_txt LIMIT 50;

Date: 2024-03-21 05:47:55
Duration: 2s351ms
Bind query: yes

SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2036477')) ORDER BY r.sort_txt LIMIT 50;

Date: 2024-03-21 05:48:08
Duration: 2s304ms
Bind query: yes

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Times Reported Time consuming queries #8

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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;

Date: 2024-03-21 05:48:52
Duration: 6s82ms
Bind query: yes

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Times Reported Time consuming queries #9

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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;

Date: 2024-03-21 05:48:58
Duration: 6s58ms
Bind query: yes