Times Reported Time consuming queries #1

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update pub2.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.REFERENCE r where has_exposures = true));

Date: 2024-04-18 13:06:42
Duration: 27m46s
Bind query: yes

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Times Reported Time consuming queries #2

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[ User: load - Total duration: 6m53s - Times executed: 3 ]

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select distinct primaryGeneTerm.acc_txt, taxonTerm.acc_txt, gt.gene_acc_txt from pub1.GENE_TAXON gt, pub1.TERM primaryGeneTerm, pub1.TERM taxonTerm where gt.gene_id = primaryGeneTerm.id and gt.taxon_id = taxonTerm.id;

Date: 2024-04-18 10:46:52
Duration: 2m23s
Database: ctddev51
User: load
Bind query: yes

select distinct primaryGeneTerm.acc_txt, taxonTerm.acc_txt, gt.gene_acc_txt from pub1.GENE_TAXON gt, pub1.TERM primaryGeneTerm, pub1.TERM taxonTerm where gt.gene_id = primaryGeneTerm.id and gt.taxon_id = taxonTerm.id;

Date: 2024-04-18 13:38:38
Duration: 2m16s
Database: ctddev51
User: load
Bind query: yes

select distinct primaryGeneTerm.acc_txt, taxonTerm.acc_txt, gt.gene_acc_txt from pub1.GENE_TAXON gt, pub1.TERM primaryGeneTerm, pub1.TERM taxonTerm where gt.gene_id = primaryGeneTerm.id and gt.taxon_id = taxonTerm.id;

Date: 2024-04-18 11:15:16
Duration: 2m13s
Database: ctddev51
User: load
Bind query: yes

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Times Reported Time consuming queries #3

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select ID, OBJECT_TYPE_ID, ACC_TXT, t.ACC_DB_CD, NM, NM_SORT, SECONDARY_NM, DESCRIPTION, NOTE from pub1.term t where object_type_id = 1;

Date: 2024-04-18 11:16:09
Duration: 47s290ms
Bind query: yes

select ID, OBJECT_TYPE_ID, ACC_TXT, t.ACC_DB_CD, NM, NM_SORT, SECONDARY_NM, DESCRIPTION, NOTE from pub1.term t where object_type_id = 1;

Date: 2024-04-18 10:47:44
Duration: 45s613ms
Bind query: yes

select ID, OBJECT_TYPE_ID, ACC_TXT, t.ACC_DB_CD, NM, NM_SORT, SECONDARY_NM, DESCRIPTION, NOTE from pub1.term t where object_type_id = 1;

Date: 2024-04-18 13:39:24
Duration: 39s49ms
Bind query: yes

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Times Reported Time consuming queries #4

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update pub2.TERM set has_exposures = false;

Date: 2024-04-18 12:36:04
Duration: 2m10s
Bind query: yes

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Times Reported Time consuming queries #5

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update pub2.PHENOTYPE_TERM pt set exposure_reference_qty = ( select count(distinct reference_id) from pub2.PHENOTYPE_TERM_REFERENCE ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and reference_id in ( select id from pub2.REFERENCE r where has_exposures = true));

Date: 2024-04-18 13:08:38
Duration: 1m55s
Bind query: yes

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Times Reported Time consuming queries #6

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[ User: editeu - Total duration: 1m10s - Times executed: 21 ]

[ User: pubeu - Total duration: 3s395ms - Times executed: 1 ]

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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '588473' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;

Date: 2024-04-18 12:31:10
Duration: 3s430ms
Database: ctddev51
User: editeu
Bind query: yes

WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '588473' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;

Date: 2024-04-18 12:37:58
Duration: 3s418ms
Database: ctddev51
User: editeu
Bind query: yes

WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '588473' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;

Date: 2024-04-18 11:53:19
Duration: 3s417ms
Database: ctddev51
User: editeu
Bind query: yes

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Times Reported Time consuming queries #7

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update pub2.CHEM_DISEASE cd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.CHEM_DISEASE_REFERENCE cdr where cd.chem_id = cdr.chem_id and cd.disease_id = cdr.disease_id and reference_id in ( select id from pub2.REFERENCE r where has_exposures = true));

Date: 2024-04-18 12:38:56
Duration: 1m23s
Bind query: yes

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Times Reported Time consuming queries #8

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update pub2.DAG_NODE set has_exposures = false;

Date: 2024-04-18 12:37:04
Duration: 55s767ms
Bind query: yes

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Times Reported Time consuming queries #9

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update pub2.REFERENCE set has_exposures = false;

Date: 2024-04-18 12:37:32
Duration: 26s648ms
Bind query: yes

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Times Reported Time consuming queries #10

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INSERT INTO pub2.EXPOSURE (id, reference_id, reference_acc_txt, reference_acc_db_id, exp_stressor_id, exp_receptor_id, exp_event_id, exp_outcome_id) SELECT e.id, r.id, reference_acc_txt, reference_acc_db_id, exp_stressor_id, exp_receptor_id, exp_event_id, exp_outcome_id FROM edit.EXPOSURE e INNER JOIN pub2.REFERENCE r ON e.reference_acc_txt = r.acc_txt AND r.acc_db_cd = 'PUBMED';

Date: 2024-04-18 12:33:53
Duration: 10s76ms
Bind query: yes

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Times Reported Time consuming queries #11

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[ User: pub2 - Total duration: 9s510ms - Times executed: 1 ]

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INSERT INTO pub2.EXP_EVENT (exp_marker_lvl, exp_marker_lvl_range, detection_limit_uom, note, detection_freq, detection_freq_range, collection_end_yr, detection_limit_is_loq, detection_limit, detection_limit_range, assay_note, assay_measurement_stat, exp_marker_actor_form_type_id, exp_marker_acc_db_id, exp_marker_acc_txt, collection_start_yr, assay_uom, exp_marker_term_id, exp_marker_type_id, medium_id, medium_nm, medium_term_id, medium_term_acc_txt, has_locations, id, exp_marker_term_nm, exp_marker_term_nm_html) SELECT DISTINCT ee.exp_marker_lvl, ee.exp_marker_lvl_range, ee.detection_limit_uom, ee.note, ee.detection_freq, ee.detection_freq_range, ee.collection_end_yr, ee.detection_limit_is_loq, ee.detection_limit, ee.detection_limit_range, ee.assay_note, ee.assay_measurement_stat, ee.exp_marker_actor_form_type_id, ee.exp_marker_acc_db_id, ee.exp_marker_acc_txt, ee.collection_start_yr, ee.assay_uom, t.id, ee.exp_marker_type_id, ee.medium_id, m.nm, mt.id, m.term_acc_txt, ee.has_locations, ee.id, ee.exp_marker_term_nm, t.nm_html FROM edit.EXP_EVENT ee INNER JOIN edit.EXPOSURE e ON e.exp_event_id = ee.id LEFT OUTER JOIN edit.EXP_MARKER_TYPE emt ON ee.exp_marker_type_id = emt.id LEFT OUTER JOIN pub2.TERM t ON ee.exp_marker_acc_txt = t.acc_txt AND emt.object_type_id = t.object_type_id LEFT OUTER JOIN pub2.MEDIUM m ON ee.medium_id = m.id LEFT OUTER JOIN pub2.TERM mt ON m.term_acc_txt = mt.acc_txt AND m.term_object_type_id = mt.object_type_id;

Date: 2024-04-18 12:33:08
Duration: 9s510ms
Database: ctddev51
User: pub2
Bind query: yes

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Times Reported Time consuming queries #12