Times Reported Time consuming queries #1

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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR DISEASES') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 2000;

Date: 2024-06-18 13:43:46
Duration: 1m14s
Bind query: yes

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Times Reported Time consuming queries #2

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[ User: pubeu - Total duration: 7s42ms - Times executed: 2 ]

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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '588473' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;

Date: 2024-06-18 13:38:38
Duration: 3s524ms
Database: ctddev51
User: pubeu
Bind query: yes

WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '588473' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;

Date: 2024-06-18 05:45:12
Duration: 3s517ms
Database: ctddev51
User: pubeu
Bind query: yes

WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '1424916' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;

Date: 2024-06-18 13:38:39
Duration: 1s16ms
Bind query: yes

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Times Reported Time consuming queries #3

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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;

Date: 2024-06-18 05:48:48
Duration: 4s185ms
Bind query: yes