pgBadger-
Global information
- Generated on Tue Aug 20 04:10:03 2024
- Log file: /project/archive/log/postgres/dbdev51/postgresql.log-20240819
- Parsed 16,127 log entries in 2s
- Log start from 2024-08-19 00:02:45 to 2024-08-19 23:58:57
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Overview
Global Stats
- 27 Number of unique normalized queries
- 30 Number of queries
- 3h14m32s Total query duration
- 2024-08-19 05:45:13 First query
- 2024-08-19 16:44:02 Last query
- 1 queries/s at 2024-08-19 08:39:02 Query peak
- 3h14m32s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 3h14m32s Execute total duration
- 17 Number of events
- 7 Number of unique normalized events
- 9 Max number of times the same event was reported
- 0 Number of cancellation
- 0 Total number of automatic vacuums
- 0 Total number of automatic analyzes
- 25 Number temporary file
- 1.00 GiB Max size of temporary file
- 860.50 MiB Average size of temporary file
- 1,893 Total number of sessions
- 46 sessions at 2024-08-19 16:40:00 Session peak
- 41d20h5m14s Total duration of sessions
- 31m49s Average duration of sessions
- 0 Average queries per session
- 6s166ms Average queries duration per session
- 31m43s Average idle time per session
- 1,894 Total number of connections
- 7 connections/s at 2024-08-19 05:45:09 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 1 queries/s Query Peak
- 2024-08-19 08:39:02 Date
SELECT Traffic
Key values
- 1 queries/s Query Peak
- 2024-08-19 08:39:02 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2024-08-19 05:45:14 Date
Queries duration
Key values
- 3h14m32s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 19 00 0 0ms 0ms 0ms 0ms 0ms 0ms 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 20 0ms 4s305ms 2s256ms 4s368ms 15s562ms 25s204ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 3 0ms 2s930ms 2s924ms 2s917ms 2s925ms 2s930ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 0 0ms 0ms 0ms 0ms 0ms 0ms 13 1 0ms 9m39s 9m39s 0ms 0ms 9m39s 14 1 0ms 10m43s 10m43s 0ms 0ms 10m43s 15 4 0ms 2h5m44s 41m3s 8m54s 20m43s 2h5m44s 16 1 0ms 9m 9m 0ms 0ms 9m 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 19 00 0 0 0ms 0ms 0ms 0ms 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 18 0 2s264ms 0ms 0ms 25s204ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 3 0 2s924ms 0ms 2s917ms 2s930ms 09 0 0 0ms 0ms 0ms 0ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 0 0 0ms 0ms 0ms 0ms 13 1 0 9m39s 0ms 0ms 9m39s 14 1 0 10m43s 0ms 0ms 10m43s 15 4 0 41m3s 0ms 8m54s 2h5m44s 16 1 0 9m 0ms 0ms 9m 17 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 19 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Aug 19 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 20 20.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 3 3.00 0.00% 09 0 0 0.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 0 0.00 0.00% 13 0 0 0.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Day Hour Count Average / Second Aug 19 00 80 0.02/s 01 80 0.02/s 02 80 0.02/s 03 80 0.02/s 04 79 0.02/s 05 81 0.02/s 06 79 0.02/s 07 78 0.02/s 08 77 0.02/s 09 72 0.02/s 10 80 0.02/s 11 79 0.02/s 12 80 0.02/s 13 85 0.02/s 14 79 0.02/s 15 83 0.02/s 16 77 0.02/s 17 77 0.02/s 18 79 0.02/s 19 76 0.02/s 20 77 0.02/s 21 76 0.02/s 22 80 0.02/s 23 80 0.02/s Day Hour Count Average Duration Average idle time Aug 19 00 80 30m39s 30m39s 01 80 30m41s 30m41s 02 80 30m39s 30m39s 03 80 30m39s 30m39s 04 79 30m41s 30m41s 05 81 28m38s 28m37s 06 79 30m39s 30m39s 07 78 30m40s 30m40s 08 77 30m24s 30m24s 09 72 30m48s 30m48s 10 80 30m40s 30m40s 11 79 30m38s 30m38s 12 80 30m40s 30m40s 13 80 30m40s 30m33s 14 79 30m38s 30m30s 15 80 30m28s 28m25s 16 75 31m40s 31m33s 17 77 30m59s 30m59s 18 81 33m20s 33m20s 19 82 52m46s 52m46s 20 78 33m53s 33m53s 21 76 30m40s 30m40s 22 80 30m39s 30m39s 23 80 30m40s 30m40s -
Connections
Established Connections
Key values
- 7 connections Connection Peak
- 2024-08-19 05:45:09 Date
Connections per database
Key values
- ctddev51 Main Database
- 1,894 connections Total
Connections per user
Key values
- editeu Main User
- 1,894 connections Total
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Sessions
Simultaneous sessions
Key values
- 46 sessions Session Peak
- 2024-08-19 16:40:00 Date
Histogram of session times
Key values
- 1,871 1800000-3600000ms duration
Sessions per database
Key values
- ctddev51 Main Database
- 1,893 sessions Total
Sessions per user
Key values
- editeu Main User
- 1,893 sessions Total
Sessions per host
Key values
- 10.12.5.53 Main Host
- 1,893 sessions Total
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Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 109 buffers Checkpoint Peak
- 2024-08-19 16:10:11 Date
- 11.017 seconds Highest write time
- 0.001 seconds Sync time
Checkpoints Wal files
Key values
- 0 files Wal files usage Peak
- 2024-08-19 17:10:02 Date
Checkpoints distance
Key values
- 1.26 Mo Distance Peak
- 2024-08-19 16:10:11 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Aug 19 00 0 0s 0s 0s 01 0 0s 0s 0s 02 0 0s 0s 0s 03 0 0s 0s 0s 04 0 0s 0s 0s 05 0 0s 0s 0s 06 62 6.306s 0.001s 6.321s 07 0 0s 0s 0s 08 6 0.692s 0.001s 0.707s 09 0 0s 0s 0s 10 0 0s 0s 0s 11 0 0s 0s 0s 12 0 0s 0s 0s 13 0 0s 0s 0s 14 0 0s 0s 0s 15 8 0.89s 0.001s 0.905s 16 116 11.814s 0.002s 11.844s 17 18 1.902s 0.001s 1.918s 18 0 0s 0s 0s 19 0 0s 0s 0s 20 0 0s 0s 0s 21 0 0s 0s 0s 22 0 0s 0s 0s 23 0 0s 0s 0s Day Hour Added Removed Recycled Synced files Longest sync Average sync Aug 19 00 0 0 0 0 0s 0s 01 0 0 0 0 0s 0s 02 0 0 0 0 0s 0s 03 0 0 0 0 0s 0s 04 0 0 0 0 0s 0s 05 0 0 0 0 0s 0s 06 0 0 0 8 0.001s 0.001s 07 0 0 0 0 0s 0s 08 0 0 0 6 0.001s 0.001s 09 0 0 0 0 0s 0s 10 0 0 0 0 0s 0s 11 0 0 0 0 0s 0s 12 0 0 0 0 0s 0s 13 0 0 0 0 0s 0s 14 0 0 0 0 0s 0s 15 0 0 0 6 0.001s 0.001s 16 0 0 0 89 0.001s 0.002s 17 0 0 0 14 0.001s 0.001s 18 0 0 0 0 0s 0s 19 0 0 0 0 0s 0s 20 0 0 0 0 0s 0s 21 0 0 0 0 0s 0s 22 0 0 0 0 0s 0s 23 0 0 0 0 0s 0s Day Hour Count Avg time (sec) Aug 19 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Aug 19 00 0.00 kB 0.00 kB 01 0.00 kB 0.00 kB 02 0.00 kB 0.00 kB 03 0.00 kB 0.00 kB 04 0.00 kB 0.00 kB 05 0.00 kB 0.00 kB 06 380.00 kB 985.00 kB 07 0.00 kB 0.00 kB 08 22.00 kB 889.00 kB 09 0.00 kB 0.00 kB 10 0.00 kB 0.00 kB 11 0.00 kB 0.00 kB 12 0.00 kB 0.00 kB 13 0.00 kB 0.00 kB 14 0.00 kB 0.00 kB 15 31.00 kB 803.00 kB 16 335.00 kB 749.00 kB 17 103.00 kB 650.00 kB 18 0.00 kB 0.00 kB 19 0.00 kB 0.00 kB 20 0.00 kB 0.00 kB 21 0.00 kB 0.00 kB 22 0.00 kB 0.00 kB 23 0.00 kB 0.00 kB -
Temporary Files
Size of temporary files
Key values
- 4.20 GiB Temp Files size Peak
- 2024-08-19 15:52:15 Date
Number of temporary files
Key values
- 5 per second Temp Files Peak
- 2024-08-19 15:52:15 Date
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Aug 19 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 5 4.19 GiB 857.95 MiB 15 15 12.61 GiB 861.15 MiB 16 5 4.20 GiB 861.09 MiB 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Queries generating the most temporary files (N)
Rank Count Total size Min size Max size Avg size Query 1 5 4.20 GiB 209.74 MiB 1.00 GiB 861.15 MiB select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;-
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:36 Duration: 20m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:35 Duration: 0ms
2 5 4.20 GiB 209.45 MiB 1.00 GiB 861.09 MiB select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);-
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:02 Duration: 9m
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:01 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:4943641
3 5 4.19 GiB 193.77 MiB 1.00 GiB 857.95 MiB select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;-
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:12 Duration: 10m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:11 Duration: 0ms
4 5 4.20 GiB 209.74 MiB 1.00 GiB 861.15 MiB select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from term chemterm, term geneterm, term phenotypeterm, term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);-
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 8m54s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:8583072
5 5 4.20 GiB 209.74 MiB 1.00 GiB 861.15 MiB select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);-
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 8m53s
-
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 0ms
Queries generating the largest temporary files
Rank Size Query 1 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 14:01:11 ]
2 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 14:01:11 ]
3 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 14:01:11 ]
4 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 14:01:12 ]
5 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 15:04:35 ]
6 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 15:04:35 ]
7 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 15:04:35 ]
8 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 15:04:35 ]
9 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:34:40 - Database: ctddev51 - User: pub1 - Application: pgAdmin 4 - CONN:8583072 ]
10 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:34:40 ]
11 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:34:40 ]
12 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:34:40 ]
13 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:52:15 ]
14 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:52:15 ]
15 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:52:15 ]
16 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:52:15 ]
17 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 16:44:01 - Database: ctddev51 - User: pub1 - Application: pgAdmin 4 - CONN:4943641 ]
18 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 16:44:01 ]
19 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 16:44:01 ]
20 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 16:44:02 ]
-
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
- 0 sec Highest CPU-cost analyze
Table
Database - Date
Autovacuum actions (5 minutes period)
NO DATASET
Average Autovacuum Duration
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
Average Autovacuum Duration (5 minutes average)
NO DATASET
Analyzes per table
Key values
- unknown (0) Main table analyzed (database )
- 0 analyzes Total
Vacuums per table
Key values
- unknown (0) Main table vacuumed on database
- 0 vacuums Total
Tuples removed per table
Key values
- unknown (0) Main table with removed tuples on database
- 0 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Aug 19 00 0 0 01 0 0 02 0 0 03 0 0 04 0 0 05 0 0 06 0 0 07 0 0 08 0 0 09 0 0 10 0 0 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 - 0 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 28 Total read queries
- 2 Total write queries
Queries by database
Key values
- unknown Main database
- 22 Requests
- 2h6m2s (ctddev51)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 37 Requests
User Request type Count Duration pub1 Total 1 2h5m44s select 1 2h5m44s pubeu Total 12 34s348ms cte 2 6s734ms select 10 27s614ms unknown Total 37 1h8m57s cte 2 2s74ms select 35 1h8m55s Duration by user
Key values
- 2h5m44s (pub1) Main time consuming user
User Request type Count Duration pub1 Total 1 2h5m44s select 1 2h5m44s pubeu Total 12 34s348ms cte 2 6s734ms select 10 27s614ms unknown Total 37 1h8m57s cte 2 2s74ms select 35 1h8m55s Queries by host
Key values
- unknown Main host
- 50 Requests
- 3h15m16s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 29 Requests
- 2h5m44s (pgAdmin 4 - CONN:1676782)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2024-08-19 08:45:47 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 23 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 2h5m44s select count(*) from ( SELECT distinct chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, -- ,GENE_GO_ANNOT g2g term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') -- AND gcr.gene_id = g2g.gene_id -- AND ptr.phenotype_id = g2g.go_term_id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id) as test;[ Date: 2024-08-19 15:44:53 - Database: ctddev51 - User: pub1 - Application: pgAdmin 4 - CONN:1676782 ]
2 20m43s select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 15:04:36 ]
3 10m43s select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 14:01:12 ]
4 9m39s select count(*) from ( SELECT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ('C', 'O') AND ptr.source_cd IN ('C') AND chemTerm.nm = 'Zinc' and geneTerm.nm = 'ACHE' and phenotypeTerm.nm = 'acetylcholine metabolic process' and diseaseTerm.nm = 'Alzheimer Disease') as test;[ Date: 2024-08-19 13:21:41 ]
5 9m select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 16:44:02 ]
6 8m54s select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:34:40 ]
7 8m53s select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:52:15 ]
8 4s305ms SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1291235)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;[ Date: 2024-08-19 05:48:30 - Bind query: yes ]
9 4s67ms select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;[ Date: 2024-08-19 05:48:50 - Bind query: yes ]
10 3s982ms select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;[ Date: 2024-08-19 05:48:55 - Bind query: yes ]
11 3s916ms SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));[ Date: 2024-08-19 05:47:20 - Database: ctddev51 - User: pubeu - Bind query: yes ]
12 3s850ms SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;[ Date: 2024-08-19 05:47:24 - Bind query: yes ]
13 3s345ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;[ Date: 2024-08-19 05:47:32 - Bind query: yes ]
14 3s340ms WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589967' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;[ Date: 2024-08-19 05:45:13 - Database: ctddev51 - User: pubeu - Bind query: yes ]
15 2s930ms select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;[ Date: 2024-08-19 08:31:43 - Database: ctddev51 - User: pubeu - Bind query: yes ]
16 2s925ms select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 1000;[ Date: 2024-08-19 08:39:02 - Database: ctddev51 - User: pubeu - Bind query: yes ]
17 2s917ms select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;[ Date: 2024-08-19 08:34:11 - Bind query: yes ]
18 2s168ms select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;[ Date: 2024-08-19 05:48:58 - Bind query: yes ]
19 1s730ms SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;[ Date: 2024-08-19 05:48:12 - Database: ctddev51 - User: pubeu - Bind query: yes ]
20 1s609ms SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;[ Date: 2024-08-19 05:47:28 - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 2h5m44s 1 2h5m44s 2h5m44s 2h5m44s select count(*) from ( select distinct chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = geneterm.id and cdr.disease_id = diseaseterm.id and ptr.phenotype_id = phenotypeterm.id) as test;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 19 15 1 2h5m44s 2h5m44s [ User: pub1 - Total duration: 2h5m44s - Times executed: 1 ]
[ Application: pgAdmin 4 - CONN:1676782 - Total duration: 2h5m44s - Times executed: 1 ]
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select count(*) from ( SELECT distinct chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, -- ,GENE_GO_ANNOT g2g term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') -- AND gcr.gene_id = g2g.gene_id -- AND ptr.phenotype_id = g2g.go_term_id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id) as test;
Date: 2024-08-19 15:44:53 Duration: 2h5m44s Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:1676782
2 20m43s 1 20m43s 20m43s 20m43s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Aug 19 15 1 20m43s 20m43s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:36 Duration: 20m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:35 Duration: 0ms
3 10m43s 1 10m43s 10m43s 10m43s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Aug 19 14 1 10m43s 10m43s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:12 Duration: 10m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:11 Duration: 0ms
4 9m39s 1 9m39s 9m39s 9m39s select count(*) from ( select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where gcr.chem_id = chemterm.id and gcr.gene_id = geneterm.id and cdr.disease_id = diseaseterm.id and ptr.phenotype_id = phenotypeterm.id and gcr.chem_id = cdr.chem_id and gcr.gene_id = gdr.gene_id and ptr.term_id = cdr.chem_id and ptr.phenotype_id = g2g.go_term_id and g2g.gene_id = gcr.gene_id and cdr.source_cd = ? and gdr.source_cd in (...) and ptr.source_cd in (...) and chemterm.nm = ? and geneterm.nm = ? and phenotypeterm.nm = ? and diseaseterm.nm = ?) as test;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Aug 19 13 1 9m39s 9m39s -
select count(*) from ( SELECT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ('C', 'O') AND ptr.source_cd IN ('C') AND chemTerm.nm = 'Zinc' and geneTerm.nm = 'ACHE' and phenotypeTerm.nm = 'acetylcholine metabolic process' and diseaseTerm.nm = 'Alzheimer Disease') as test;
Date: 2024-08-19 13:21:41 Duration: 9m39s
5 9m 1 9m 9m 9m select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Aug 19 16 1 9m 9m -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:02 Duration: 9m
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:01 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:4943641
6 8m54s 1 8m54s 8m54s 8m54s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from term chemterm, term geneterm, term phenotypeterm, term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Aug 19 15 1 8m54s 8m54s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 8m54s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:8583072
7 8m53s 1 8m53s 8m53s 8m53s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Aug 19 15 1 8m53s 8m53s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 8m53s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 0ms
8 5s855ms 2 2s925ms 2s930ms 2s927ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and exists ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?) and diseaseterm.id = dp.descendant_object_id) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Aug 19 08 2 5s855ms 2s927ms [ User: pubeu - Total duration: 5s855ms - Times executed: 2 ]
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-08-19 08:31:43 Duration: 2s930ms Database: ctddev51 User: pubeu Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 1000;
Date: 2024-08-19 08:39:02 Duration: 2s925ms Database: ctddev51 User: pubeu Bind query: yes
9 4s368ms 2 1s28ms 3s340ms 2s184ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Aug 19 05 2 4s368ms 2s184ms [ User: pubeu - Total duration: 3s340ms - Times executed: 1 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589967' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-19 05:45:13 Duration: 3s340ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '1432724' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-19 05:45:14 Duration: 1s28ms Bind query: yes
10 4s305ms 1 4s305ms 4s305ms 4s305ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Aug 19 05 1 4s305ms 4s305ms -
SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1291235)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-08-19 05:48:30 Duration: 4s305ms Bind query: yes
11 4s67ms 1 4s67ms 4s67ms 4s67ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Aug 19 05 1 4s67ms 4s67ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-19 05:48:50 Duration: 4s67ms Bind query: yes
12 3s982ms 1 3s982ms 3s982ms 3s982ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Aug 19 05 1 3s982ms 3s982ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-19 05:48:55 Duration: 3s982ms Bind query: yes
13 3s916ms 1 3s916ms 3s916ms 3s916ms select gcr.ixn_id, null, null, null from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?));Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Aug 19 05 1 3s916ms 3s916ms [ User: pubeu - Total duration: 3s916ms - Times executed: 1 ]
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SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-08-19 05:47:20 Duration: 3s916ms Database: ctddev51 User: pubeu Bind query: yes
14 3s850ms 1 3s850ms 3s850ms 3s850ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Aug 19 05 1 3s850ms 3s850ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-19 05:47:24 Duration: 3s850ms Bind query: yes
15 3s345ms 1 3s345ms 3s345ms 3s345ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select tp.term_id from term_pathway tp where upper(tp.pathway_nm) like ? and tp.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Aug 19 05 1 3s345ms 3s345ms -
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-08-19 05:47:32 Duration: 3s345ms Bind query: yes
16 3s243ms 2 1s513ms 1s730ms 1s621ms select fg.nm fromgenesymbol, fg.acc_txt fromgeneacc, tg.nm togenesymbol, tg.acc_txt togeneacc, ft.nm fromtaxonnm, ft.secondary_nm fromtaxoncommonnm, ft.acc_txt fromtaxonacc, tt.nm totaxonnm, tt.secondary_nm totaxoncommonnm, tt.acc_txt totaxonacc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( select string_agg(ggt.throughput_txt, ? order by ggt.throughput_txt) from gene_gene_ref_throughput ggt where ggt.gene_gene_reference_id = ggr.id) throughput, count(*) over () fullrowcount from gene_gene_reference ggr inner join term fg on ggr.from_gene_id = fg.id inner join term tg on ggr.to_gene_id = tg.id inner join term ft on ggr.from_taxon_id = ft.id inner join term tt on ggr.to_taxon_id = tt.id where ggr.reference_id = ? order by fg.nm_sort, tg.nm_sort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Aug 19 05 2 3s243ms 1s621ms [ User: pubeu - Total duration: 1s730ms - Times executed: 1 ]
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-08-19 05:48:12 Duration: 1s730ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-08-19 05:48:10 Duration: 1s513ms Bind query: yes
17 2s917ms 1 2s917ms 2s917ms 2s917ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and exists ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?) and diseaseterm.id = dp.descendant_object_id) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Aug 19 08 1 2s917ms 2s917ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2024-08-19 08:34:11 Duration: 2s917ms Bind query: yes
18 2s168ms 1 2s168ms 2s168ms 2s168ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and viageneptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and phenotypeterm.id = any (array ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Aug 19 05 1 2s168ms 2s168ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-08-19 05:48:58 Duration: 2s168ms Bind query: yes
19 1s609ms 1 1s609ms 1s609ms 1s609ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.taxon_id = any (array ( select dp.descendant_object_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id where upper(t.nm) like ? and t.object_type_id = ?)) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Aug 19 05 1 1s609ms 1s609ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-19 05:47:28 Duration: 1s609ms Bind query: yes
20 1s513ms 1 1s513ms 1s513ms 1s513ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by gt.nm_sort desc limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Aug 19 05 1 1s513ms 1s513ms [ User: pubeu - Total duration: 1s513ms - Times executed: 1 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1291235' AND te.enriched_object_type_id = 5 ORDER BY gt.nm_sort DESC LIMIT 50;
Date: 2024-08-19 05:47:54 Duration: 1s513ms Database: ctddev51 User: pubeu Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 2 5s855ms 2s925ms 2s930ms 2s927ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and exists ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?) and diseaseterm.id = dp.descendant_object_id) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 19 08 2 5s855ms 2s927ms [ User: pubeu - Total duration: 5s855ms - Times executed: 2 ]
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-08-19 08:31:43 Duration: 2s930ms Database: ctddev51 User: pubeu Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 1000;
Date: 2024-08-19 08:39:02 Duration: 2s925ms Database: ctddev51 User: pubeu Bind query: yes
2 2 4s368ms 1s28ms 3s340ms 2s184ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Aug 19 05 2 4s368ms 2s184ms [ User: pubeu - Total duration: 3s340ms - Times executed: 1 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589967' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-19 05:45:13 Duration: 3s340ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '1432724' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-19 05:45:14 Duration: 1s28ms Bind query: yes
3 2 3s243ms 1s513ms 1s730ms 1s621ms select fg.nm fromgenesymbol, fg.acc_txt fromgeneacc, tg.nm togenesymbol, tg.acc_txt togeneacc, ft.nm fromtaxonnm, ft.secondary_nm fromtaxoncommonnm, ft.acc_txt fromtaxonacc, tt.nm totaxonnm, tt.secondary_nm totaxoncommonnm, tt.acc_txt totaxonacc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( select string_agg(ggt.throughput_txt, ? order by ggt.throughput_txt) from gene_gene_ref_throughput ggt where ggt.gene_gene_reference_id = ggr.id) throughput, count(*) over () fullrowcount from gene_gene_reference ggr inner join term fg on ggr.from_gene_id = fg.id inner join term tg on ggr.to_gene_id = tg.id inner join term ft on ggr.from_taxon_id = ft.id inner join term tt on ggr.to_taxon_id = tt.id where ggr.reference_id = ? order by fg.nm_sort, tg.nm_sort limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Aug 19 05 2 3s243ms 1s621ms [ User: pubeu - Total duration: 1s730ms - Times executed: 1 ]
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-08-19 05:48:12 Duration: 1s730ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-08-19 05:48:10 Duration: 1s513ms Bind query: yes
4 1 2h5m44s 2h5m44s 2h5m44s 2h5m44s select count(*) from ( select distinct chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = geneterm.id and cdr.disease_id = diseaseterm.id and ptr.phenotype_id = phenotypeterm.id) as test;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Aug 19 15 1 2h5m44s 2h5m44s [ User: pub1 - Total duration: 2h5m44s - Times executed: 1 ]
[ Application: pgAdmin 4 - CONN:1676782 - Total duration: 2h5m44s - Times executed: 1 ]
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select count(*) from ( SELECT distinct chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, -- ,GENE_GO_ANNOT g2g term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') -- AND gcr.gene_id = g2g.gene_id -- AND ptr.phenotype_id = g2g.go_term_id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id) as test;
Date: 2024-08-19 15:44:53 Duration: 2h5m44s Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:1676782
5 1 20m43s 20m43s 20m43s 20m43s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Aug 19 15 1 20m43s 20m43s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:36 Duration: 20m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:35 Duration: 0ms
6 1 10m43s 10m43s 10m43s 10m43s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Aug 19 14 1 10m43s 10m43s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:12 Duration: 10m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:11 Duration: 0ms
7 1 9m39s 9m39s 9m39s 9m39s select count(*) from ( select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where gcr.chem_id = chemterm.id and gcr.gene_id = geneterm.id and cdr.disease_id = diseaseterm.id and ptr.phenotype_id = phenotypeterm.id and gcr.chem_id = cdr.chem_id and gcr.gene_id = gdr.gene_id and ptr.term_id = cdr.chem_id and ptr.phenotype_id = g2g.go_term_id and g2g.gene_id = gcr.gene_id and cdr.source_cd = ? and gdr.source_cd in (...) and ptr.source_cd in (...) and chemterm.nm = ? and geneterm.nm = ? and phenotypeterm.nm = ? and diseaseterm.nm = ?) as test;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Aug 19 13 1 9m39s 9m39s -
select count(*) from ( SELECT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ('C', 'O') AND ptr.source_cd IN ('C') AND chemTerm.nm = 'Zinc' and geneTerm.nm = 'ACHE' and phenotypeTerm.nm = 'acetylcholine metabolic process' and diseaseTerm.nm = 'Alzheimer Disease') as test;
Date: 2024-08-19 13:21:41 Duration: 9m39s
8 1 9m 9m 9m 9m select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Aug 19 16 1 9m 9m -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:02 Duration: 9m
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:01 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:4943641
9 1 8m54s 8m54s 8m54s 8m54s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from term chemterm, term geneterm, term phenotypeterm, term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Aug 19 15 1 8m54s 8m54s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 8m54s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:8583072
10 1 8m53s 8m53s 8m53s 8m53s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Aug 19 15 1 8m53s 8m53s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 8m53s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 0ms
11 1 4s305ms 4s305ms 4s305ms 4s305ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Aug 19 05 1 4s305ms 4s305ms -
SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1291235)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-08-19 05:48:30 Duration: 4s305ms Bind query: yes
12 1 4s67ms 4s67ms 4s67ms 4s67ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Aug 19 05 1 4s67ms 4s67ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-19 05:48:50 Duration: 4s67ms Bind query: yes
13 1 3s982ms 3s982ms 3s982ms 3s982ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Aug 19 05 1 3s982ms 3s982ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-19 05:48:55 Duration: 3s982ms Bind query: yes
14 1 3s916ms 3s916ms 3s916ms 3s916ms select gcr.ixn_id, null, null, null from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?));Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Aug 19 05 1 3s916ms 3s916ms [ User: pubeu - Total duration: 3s916ms - Times executed: 1 ]
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SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-08-19 05:47:20 Duration: 3s916ms Database: ctddev51 User: pubeu Bind query: yes
15 1 3s850ms 3s850ms 3s850ms 3s850ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Aug 19 05 1 3s850ms 3s850ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-19 05:47:24 Duration: 3s850ms Bind query: yes
16 1 3s345ms 3s345ms 3s345ms 3s345ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select tp.term_id from term_pathway tp where upper(tp.pathway_nm) like ? and tp.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Aug 19 05 1 3s345ms 3s345ms -
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-08-19 05:47:32 Duration: 3s345ms Bind query: yes
17 1 2s917ms 2s917ms 2s917ms 2s917ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and exists ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?) and diseaseterm.id = dp.descendant_object_id) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Aug 19 08 1 2s917ms 2s917ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2024-08-19 08:34:11 Duration: 2s917ms Bind query: yes
18 1 2s168ms 2s168ms 2s168ms 2s168ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and viageneptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and phenotypeterm.id = any (array ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Aug 19 05 1 2s168ms 2s168ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-08-19 05:48:58 Duration: 2s168ms Bind query: yes
19 1 1s609ms 1s609ms 1s609ms 1s609ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.taxon_id = any (array ( select dp.descendant_object_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id where upper(t.nm) like ? and t.object_type_id = ?)) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Aug 19 05 1 1s609ms 1s609ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-19 05:47:28 Duration: 1s609ms Bind query: yes
20 1 1s513ms 1s513ms 1s513ms 1s513ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by gt.nm_sort desc limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Aug 19 05 1 1s513ms 1s513ms [ User: pubeu - Total duration: 1s513ms - Times executed: 1 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1291235' AND te.enriched_object_type_id = 5 ORDER BY gt.nm_sort DESC LIMIT 50;
Date: 2024-08-19 05:47:54 Duration: 1s513ms Database: ctddev51 User: pubeu Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 2h5m44s 2h5m44s 2h5m44s 1 2h5m44s select count(*) from ( select distinct chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = geneterm.id and cdr.disease_id = diseaseterm.id and ptr.phenotype_id = phenotypeterm.id) as test;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 19 15 1 2h5m44s 2h5m44s [ User: pub1 - Total duration: 2h5m44s - Times executed: 1 ]
[ Application: pgAdmin 4 - CONN:1676782 - Total duration: 2h5m44s - Times executed: 1 ]
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select count(*) from ( SELECT distinct chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, -- ,GENE_GO_ANNOT g2g term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') -- AND gcr.gene_id = g2g.gene_id -- AND ptr.phenotype_id = g2g.go_term_id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id) as test;
Date: 2024-08-19 15:44:53 Duration: 2h5m44s Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:1676782
2 20m43s 20m43s 20m43s 1 20m43s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Aug 19 15 1 20m43s 20m43s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:36 Duration: 20m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:35 Duration: 0ms
3 10m43s 10m43s 10m43s 1 10m43s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Aug 19 14 1 10m43s 10m43s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:12 Duration: 10m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:11 Duration: 0ms
4 9m39s 9m39s 9m39s 1 9m39s select count(*) from ( select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where gcr.chem_id = chemterm.id and gcr.gene_id = geneterm.id and cdr.disease_id = diseaseterm.id and ptr.phenotype_id = phenotypeterm.id and gcr.chem_id = cdr.chem_id and gcr.gene_id = gdr.gene_id and ptr.term_id = cdr.chem_id and ptr.phenotype_id = g2g.go_term_id and g2g.gene_id = gcr.gene_id and cdr.source_cd = ? and gdr.source_cd in (...) and ptr.source_cd in (...) and chemterm.nm = ? and geneterm.nm = ? and phenotypeterm.nm = ? and diseaseterm.nm = ?) as test;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Aug 19 13 1 9m39s 9m39s -
select count(*) from ( SELECT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ('C', 'O') AND ptr.source_cd IN ('C') AND chemTerm.nm = 'Zinc' and geneTerm.nm = 'ACHE' and phenotypeTerm.nm = 'acetylcholine metabolic process' and diseaseTerm.nm = 'Alzheimer Disease') as test;
Date: 2024-08-19 13:21:41 Duration: 9m39s
5 9m 9m 9m 1 9m select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Aug 19 16 1 9m 9m -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:02 Duration: 9m
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:01 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:4943641
6 8m54s 8m54s 8m54s 1 8m54s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from term chemterm, term geneterm, term phenotypeterm, term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Aug 19 15 1 8m54s 8m54s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 8m54s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:8583072
7 8m53s 8m53s 8m53s 1 8m53s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Aug 19 15 1 8m53s 8m53s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 8m53s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 0ms
8 4s305ms 4s305ms 4s305ms 1 4s305ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Aug 19 05 1 4s305ms 4s305ms -
SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1291235)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-08-19 05:48:30 Duration: 4s305ms Bind query: yes
9 4s67ms 4s67ms 4s67ms 1 4s67ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Aug 19 05 1 4s67ms 4s67ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-19 05:48:50 Duration: 4s67ms Bind query: yes
10 3s982ms 3s982ms 3s982ms 1 3s982ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Aug 19 05 1 3s982ms 3s982ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-19 05:48:55 Duration: 3s982ms Bind query: yes
11 3s916ms 3s916ms 3s916ms 1 3s916ms select gcr.ixn_id, null, null, null from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?));Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Aug 19 05 1 3s916ms 3s916ms [ User: pubeu - Total duration: 3s916ms - Times executed: 1 ]
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SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-08-19 05:47:20 Duration: 3s916ms Database: ctddev51 User: pubeu Bind query: yes
12 3s850ms 3s850ms 3s850ms 1 3s850ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Aug 19 05 1 3s850ms 3s850ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-19 05:47:24 Duration: 3s850ms Bind query: yes
13 3s345ms 3s345ms 3s345ms 1 3s345ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select tp.term_id from term_pathway tp where upper(tp.pathway_nm) like ? and tp.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Aug 19 05 1 3s345ms 3s345ms -
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-08-19 05:47:32 Duration: 3s345ms Bind query: yes
14 2s925ms 2s930ms 2s927ms 2 5s855ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and exists ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?) and diseaseterm.id = dp.descendant_object_id) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Aug 19 08 2 5s855ms 2s927ms [ User: pubeu - Total duration: 5s855ms - Times executed: 2 ]
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-08-19 08:31:43 Duration: 2s930ms Database: ctddev51 User: pubeu Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 1000;
Date: 2024-08-19 08:39:02 Duration: 2s925ms Database: ctddev51 User: pubeu Bind query: yes
15 2s917ms 2s917ms 2s917ms 1 2s917ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and exists ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?) and diseaseterm.id = dp.descendant_object_id) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Aug 19 08 1 2s917ms 2s917ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'CADMIUM') and exists ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'DIABETES MELLITUS') and diseaseTerm.id = dp.descendant_object_id) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2024-08-19 08:34:11 Duration: 2s917ms Bind query: yes
16 1s28ms 3s340ms 2s184ms 2 4s368ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Aug 19 05 2 4s368ms 2s184ms [ User: pubeu - Total duration: 3s340ms - Times executed: 1 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589967' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-19 05:45:13 Duration: 3s340ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '1432724' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-19 05:45:14 Duration: 1s28ms Bind query: yes
17 2s168ms 2s168ms 2s168ms 1 2s168ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and viageneptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and phenotypeterm.id = any (array ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Aug 19 05 1 2s168ms 2s168ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-08-19 05:48:58 Duration: 2s168ms Bind query: yes
18 1s513ms 1s730ms 1s621ms 2 3s243ms select fg.nm fromgenesymbol, fg.acc_txt fromgeneacc, tg.nm togenesymbol, tg.acc_txt togeneacc, ft.nm fromtaxonnm, ft.secondary_nm fromtaxoncommonnm, ft.acc_txt fromtaxonacc, tt.nm totaxonnm, tt.secondary_nm totaxoncommonnm, tt.acc_txt totaxonacc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( select string_agg(ggt.throughput_txt, ? order by ggt.throughput_txt) from gene_gene_ref_throughput ggt where ggt.gene_gene_reference_id = ggr.id) throughput, count(*) over () fullrowcount from gene_gene_reference ggr inner join term fg on ggr.from_gene_id = fg.id inner join term tg on ggr.to_gene_id = tg.id inner join term ft on ggr.from_taxon_id = ft.id inner join term tt on ggr.to_taxon_id = tt.id where ggr.reference_id = ? order by fg.nm_sort, tg.nm_sort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Aug 19 05 2 3s243ms 1s621ms [ User: pubeu - Total duration: 1s730ms - Times executed: 1 ]
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-08-19 05:48:12 Duration: 1s730ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-08-19 05:48:10 Duration: 1s513ms Bind query: yes
19 1s609ms 1s609ms 1s609ms 1 1s609ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.taxon_id = any (array ( select dp.descendant_object_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id where upper(t.nm) like ? and t.object_type_id = ?)) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Aug 19 05 1 1s609ms 1s609ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-19 05:47:28 Duration: 1s609ms Bind query: yes
20 1s513ms 1s513ms 1s513ms 1 1s513ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by gt.nm_sort desc limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Aug 19 05 1 1s513ms 1s513ms [ User: pubeu - Total duration: 1s513ms - Times executed: 1 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1291235' AND te.enriched_object_type_id = 5 ORDER BY gt.nm_sort DESC LIMIT 50;
Date: 2024-08-19 05:47:54 Duration: 1s513ms Database: ctddev51 User: pubeu Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
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Events
Log levels
Key values
- 7,705 Log entries
Events distribution
Key values
- 0 PANIC entries
- 0 FATAL entries
- 16 ERROR entries
- 1 WARNING entries
Most Frequent Errors/Events
Key values
- 9 Max number of times the same event was reported
- 17 Total events found
Rank Times reported Error 1 9 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #1
Day Hour Count Aug 19 18 2 19 6 20 1 2 2 ERROR: canceling statement due to user request
Times Reported Most Frequent Error / Event #2
Day Hour Count Aug 19 13 2 - ERROR: canceling statement due to user request
- ERROR: canceling statement due to user request
Statement: SELECT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ( 'C', 'O' ) AND ptr.source_cd IN ( 'C' ) AND chemTerm.nm = 'Zinc'
Date: 2024-08-19 13:09:19
Statement: select count(*) from ( SELECT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ( 'C', 'O' ) AND ptr.source_cd IN ( 'C' ) AND chemTerm.nm = 'Zinc' ) as test
Date: 2024-08-19 13:11:56
3 2 ERROR: column "..." does not exist
Times Reported Most Frequent Error / Event #3
Day Hour Count Aug 19 13 2 - ERROR: column ptr.chem_id does not exist at character 730
- ERROR: column gdr.disease does not exist at character 704
Hint: Perhaps you meant to reference the column "gcr.chem_id" or the column "cdr.chem_id".
Statement: SELECT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.chem_id = cgr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ( 'C', 'O' ) AND ptr.source_cd IN ( 'C' ) AND chemTerm.nm = 'Zinc'Date: 2024-08-19 13:07:52 Database: ctddev51 Application: pgAdmin 4 - CONN:9631879 User: pub1 Remote:
Hint: Perhaps you meant to reference the column "gdr.disease_id".
Statement: explain SELECT DISTINCT gcr.chem_id ,gcr.gene_id ,ptr.phenotype_id ,cdr.disease_id FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ( 'C' ) AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ( 'C', 'O' ) AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease AND ptr.phenotype_id = g2g.go_term_idDate: 2024-08-19 13:49:33 Database: ctddev51 Application: pgAdmin 4 - CONN:6782070 User: pub1 Remote:
4 1 ERROR: syntax error at or near "..."
Times Reported Most Frequent Error / Event #4
Day Hour Count Aug 19 13 1 - ERROR: syntax error at or near ")" at character 24
Statement: select count(*) from () SELECT DISTINCT gcr.chem_id ,gcr.gene_id ,ptr.phenotype_id ,cdr.disease_id FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ( 'C' ) AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ( 'C', 'O' ) AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id ) as test
Date: 2024-08-19 13:50:23
5 1 ERROR: missing FROM-clause entry for table "..."
Times Reported Most Frequent Error / Event #5
Day Hour Count Aug 19 13 1 - ERROR: missing FROM-clause entry for table "cgr" at character 749
Statement: SELECT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cgr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ( 'C', 'O' ) AND ptr.source_cd IN ( 'C' ) AND chemTerm.nm = 'Zinc'
Date: 2024-08-19 13:08:32
6 1 WARNING: is not a PostgreSQL server process
Times Reported Most Frequent Error / Event #6
Day Hour Count Aug 19 15 1 7 1 ERROR: subquery in FROM must have an alias
Times Reported Most Frequent Error / Event #7
Day Hour Count Aug 19 13 1 - ERROR: subquery in FROM must have an alias at character 22
Hint: For example, FROM (SELECT ...) [AS] foo.
Statement: select count(*) from ( SELECT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ( 'C', 'O' ) AND ptr.source_cd IN ( 'C' ) AND chemTerm.nm = 'Zinc' )Date: 2024-08-19 13:09:41