Times Reported Time consuming queries #1

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[ User: editeu - Total duration: 1m25s - Times executed: 22 ]

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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;

Date: 2025-01-09 09:50:07
Duration: 9s374ms
Database: ctddev51
User: editeu
Bind query: yes

select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;

Date: 2025-01-09 09:50:07
Duration: 9s260ms
Database: ctddev51
User: editeu
Bind query: yes

select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;

Date: 2025-01-09 09:50:04
Duration: 6s532ms
Database: ctddev51
User: editeu
Bind query: yes

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Times Reported Time consuming queries #2

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select distinct e.reference_acc_txt as pubmed_id, pref.abbr_authors_txt as author, referenceExp.author_summary, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associated_study_titles, eevent.collection_start_yr as collection_start_year, eevent.collection_end_yr as collection_end_year, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as study_factor, ( Select STRING_AGG(distinct stressorSrcType.nm, '|')) as stressor_source_category, stressor.chem_term_nm as stressor_chemical, stressor.src_details as stressor_source_details, stressor.sample_qty as number_of_stressor_samples, stressor.note as stressor_notes, ereceptor.qty as number_of_receptors, ereceptor.description as receptor, ereceptor.term_nm as receptor_description, ereceptor.term_acc_txt as receptor_id, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smoker_status, ereceptor.age || ' ' || age_uom.nm as receptor_age, age_qualifier.nm as receptor_age_qualifier, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm)), '|') from exp_receptor_gender expgender left outer join gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as receptor_gender, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as receptor_race, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as methods, eevent.detection_limit as detection_limit, eevent.detection_limit_uom as detection_limit_unit, eevent.detection_freq as detection_frequency, emedium.nm as medium, eevent.exp_marker_term_nm as biomarker, eevent.exp_marker_lvl as biomarker_level, eevent.assay_uom as assay_unit, eevent.assay_measurement_stat as assay_measurement_statistic, eevent.assay_note as assay_notes, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as state_or_province, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as event_note, eiot.description as outcome_interaction, outcome.disease_term_nm as disease, outcome.phenotype_action_degree_type_nm as phenotype_action_qualifier, outcome.phenotype_term_nm as phenotype, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcome_note from exposure e left outer join reference pref on pref.acc_txt = e.reference_acc_txt left outer join reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join exp_event eevent on e.exp_event_id = eevent.id left outer join medium emedium on eevent.medium_id = emedium.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join race race on receptorRace.race_id = race.id left outer join exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join country on eventLocation.country_id = country.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id where stressor.chem_acc_txt in ('D007854') or eevent.exp_marker_acc_txt in ('D007854') group by pubmed_id, author, author_summary, collection_start_year, collection_end_year, stressor_chemical, stressor_source_details, number_of_stressor_samples, stressor_notes, number_of_receptors, receptor_description, receptor, receptor_id, receptor_note, receptor_age, receptor_age_qualifier, detection_limit, detection_limit_unit, detection_frequency, medium, biomarker, biomarker_level, assay_unit, assay_measurement_statistic, assay_notes, event_note, outcome_interaction, disease, phenotype_action_qualifier, phenotype, outcome_note, ereceptor.id, eventLocation.exp_event_id;

Date: 2025-01-09 11:39:10
Duration: 45s515ms

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Times Reported Time consuming queries #3

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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;

Date: 2025-01-09 09:52:53
Duration: 41s356ms
Bind query: yes

SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;

Date: 2025-01-09 05:47:32
Duration: 3s504ms
Bind query: yes