pgBadger-
Global information
- Generated on Sat Dec 6 04:10:03 2025
- Log file: /project/archive/log/postgres/dbdev51/postgresql.log-20251205
- Parsed 1,074 log entries in 2s
- Log start from 2025-12-05 10:17:48 to 2025-12-05 18:59:32
-
Overview
Global Stats
- 1 Number of unique normalized queries
- 1 Number of queries
- 5s549ms Total query duration
- 2025-12-05 13:31:47 First query
- 2025-12-05 13:31:47 Last query
- 1 queries/s at 2025-12-05 13:31:47 Query peak
- 5s549ms Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 5s549ms Execute total duration
- 7 Number of events
- 3 Number of unique normalized events
- 5 Max number of times the same event was reported
- 0 Number of cancellation
- 0 Total number of automatic vacuums
- 0 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 131 Total number of sessions
- 12 sessions at 2025-12-05 16:20:28 Session peak
- 121d15h30m25s Total duration of sessions
- 22h17m10s Average duration of sessions
- 0 Average queries per session
- 42ms Average queries duration per session
- 22h17m10s Average idle time per session
- 131 Total number of connections
- 9 connections/s at 2025-12-05 13:34:08 Connection peak
- 1 Total number of databases
SQL Traffic
Key values
- 1 queries/s Query Peak
- 2025-12-05 13:31:47 Date
SELECT Traffic
Key values
- 1 queries/s Query Peak
- 2025-12-05 13:31:47 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 0 queries/s Query Peak
- Date
Queries duration
Key values
- 5s549ms Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Dec 05 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 0 0ms 0ms 0ms 0ms 0ms 0ms 13 1 0ms 5s549ms 5s549ms 5s549ms 5s549ms 5s549ms 14 0 0ms 0ms 0ms 0ms 0ms 0ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Dec 05 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 0 0 0ms 0ms 0ms 0ms 13 1 0 5s549ms 5s549ms 5s549ms 5s549ms 14 0 0 0ms 0ms 0ms 0ms 16 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Dec 05 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Dec 05 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 0 0.00 0.00% 13 0 1 1.00 0.00% 14 0 0 0.00 0.00% 16 0 0 0.00 0.00% 18 0 0 0.00 0.00% Day Hour Count Average / Second Dec 05 10 15 0.00/s 11 16 0.00/s 12 49 0.01/s 13 18 0.01/s 14 3 0.00/s 16 30 0.01/s 18 0 0.00/s Day Hour Count Average Duration Average idle time Dec 05 10 7 26m14s 26m14s 11 16 33m51s 33m51s 12 57 2d2h36m19s 2d2h36m19s 13 18 25m34s 25m33s 14 3 30m10s 30m10s 16 25 6m25s 6m25s 18 5 2h12m32s 2h12m32s -
Connections
Established Connections
Key values
- 9 connections Connection Peak
- 2025-12-05 13:34:08 Date
Connections per database
Key values
- ctddev51 Main Database
- 131 connections Total
Connections per user
Key values
- pubeu Main User
- 131 connections Total
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Sessions
Simultaneous sessions
Key values
- 12 sessions Session Peak
- 2025-12-05 16:20:28 Date
Histogram of session times
Key values
- 35 1800000-3600000ms duration
Sessions per database
Key values
- ctddev51 Main Database
- 131 sessions Total
Sessions per user
Key values
- pubeu Main User
- 131 sessions Total
Sessions per host
Key values
- 10.12.5.37 Main Host
- 131 sessions Total
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Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 7 buffers Checkpoint Peak
- 2025-12-05 16:13:11 Date
- 0.807 seconds Highest write time
- 0.001 seconds Sync time
Checkpoints Wal files
Key values
- 0 files Wal files usage Peak
- 2025-12-05 16:13:11 Date
Checkpoints distance
Key values
- 0.05 Mo Distance Peak
- 2025-12-05 16:13:11 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Dec 05 10 0 0s 0s 0s 11 0 0s 0s 0s 12 0 0s 0s 0s 13 0 0s 0s 0s 14 0 0s 0s 0s 16 7 0.807s 0.001s 0.822s 18 0 0s 0s 0s Day Hour Added Removed Recycled Synced files Longest sync Average sync Dec 05 10 0 0 0 0 0s 0s 11 0 0 0 0 0s 0s 12 0 0 0 0 0s 0s 13 0 0 0 0 0s 0s 14 0 0 0 0 0s 0s 16 0 0 0 6 0.001s 0.001s 18 0 0 0 0 0s 0s Day Hour Count Avg time (sec) Dec 05 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 16 0 0s 18 0 0s Day Hour Mean distance Mean estimate Dec 05 10 0.00 kB 0.00 kB 11 0.00 kB 0.00 kB 12 0.00 kB 0.00 kB 13 0.00 kB 0.00 kB 14 0.00 kB 0.00 kB 16 28.00 kB 131.00 kB 18 0.00 kB 0.00 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Dec 05 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 16 0 0 0 18 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
- 0 sec Highest CPU-cost analyze
Table
Database - Date
Autovacuum actions (5 minutes period)
NO DATASET
Average Autovacuum Duration
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
Average Autovacuum Duration (5 minutes average)
NO DATASET
Analyzes per table
Key values
- unknown (0) Main table analyzed (database )
- 0 analyzes Total
Vacuums per table
Key values
- unknown (0) Main table vacuumed on database
- 0 vacuums Total
Tuples removed per table
Key values
- unknown (0) Main table with removed tuples on database
- 0 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Dec 05 10 0 0 11 0 0 12 0 0 13 0 0 14 0 0 16 0 0 18 0 0 - 0 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
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Queries
Queries by type
Key values
- 1 Total read queries
- 0 Total write queries
Queries by database
Key values
- ctddev51 Main database
- 1 Requests
- 5s549ms (ctddev51)
- Main time consuming database
Queries by user
Key values
- pubeu Main user
- 1 Requests
User Request type Count Duration pubeu Total 1 5s549ms select 1 5s549ms Duration by user
Key values
- 5s549ms (pubeu) Main time consuming user
User Request type Count Duration pubeu Total 1 5s549ms select 1 5s549ms Queries by host
Key values
- unknown Main host
- 1 Requests
- 5s549ms (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 1 Requests
- 5s549ms (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2025-12-05 12:17:45 Date
Number of cancelled queries (5 minutes period)
NO DATASET
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Top Queries
Histogram of query times
Key values
- 1 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 5s549ms SELECT /* DiseasePathwayAssnsDAO */ d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tp.pathway_nm pathwaynm, tp.pathway_acc_db_cd pathwayaccdbcd, tp.pathway_acc_txt pathwayacc, tp.pathway_id pathwayId, COUNT(gd.gene_id) inferredCount, COUNT(*) OVER () fullRowCount FROM gene_disease gd INNER JOIN term_pathway tp ON gd.gene_id = tp.term_id INNER JOIN term d ON gd.disease_id = d.id WHERE tp.object_type_id = 4 AND gd.curated_reference_qty > 0 AND tp.pathway_id = '2125620' GROUP BY d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, d.id, tp.pathway_nm, tp.pathway_acc_db_cd, tp.pathway_acc_txt, tp.pathway_id ORDER BY COUNT(gd.gene_id) DESC, tp.pathway_nm, d.nm_sort LIMIT 50;[ Date: 2025-12-05 13:31:47 - Database: ctddev51 - User: pubeu - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 5s549ms 1 5s549ms 5s549ms 5s549ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tp.pathway_nm pathwaynm, tp.pathway_acc_db_cd pathwayaccdbcd, tp.pathway_acc_txt pathwayacc, tp.pathway_id pathwayid, count(gd.gene_id) inferredcount, count(*) over () fullrowcount from gene_disease gd inner join term_pathway tp on gd.gene_id = tp.term_id inner join term d on gd.disease_id = d.id where tp.object_type_id = ? and gd.curated_reference_qty > ? and tp.pathway_id = ? group by d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, d.id, tp.pathway_nm, tp.pathway_acc_db_cd, tp.pathway_acc_txt, tp.pathway_id order by count(gd.gene_id) desc, tp.pathway_nm, d.nm_sort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Dec 05 13 1 5s549ms 5s549ms [ User: pubeu - Total duration: 5s549ms - Times executed: 1 ]
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SELECT /* DiseasePathwayAssnsDAO */ d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tp.pathway_nm pathwaynm, tp.pathway_acc_db_cd pathwayaccdbcd, tp.pathway_acc_txt pathwayacc, tp.pathway_id pathwayId, COUNT(gd.gene_id) inferredCount, COUNT(*) OVER () fullRowCount FROM gene_disease gd INNER JOIN term_pathway tp ON gd.gene_id = tp.term_id INNER JOIN term d ON gd.disease_id = d.id WHERE tp.object_type_id = 4 AND gd.curated_reference_qty > 0 AND tp.pathway_id = '2125620' GROUP BY d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, d.id, tp.pathway_nm, tp.pathway_acc_db_cd, tp.pathway_acc_txt, tp.pathway_id ORDER BY COUNT(gd.gene_id) DESC, tp.pathway_nm, d.nm_sort LIMIT 50;
Date: 2025-12-05 13:31:47 Duration: 5s549ms Database: ctddev51 User: pubeu Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 1 5s549ms 5s549ms 5s549ms 5s549ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tp.pathway_nm pathwaynm, tp.pathway_acc_db_cd pathwayaccdbcd, tp.pathway_acc_txt pathwayacc, tp.pathway_id pathwayid, count(gd.gene_id) inferredcount, count(*) over () fullrowcount from gene_disease gd inner join term_pathway tp on gd.gene_id = tp.term_id inner join term d on gd.disease_id = d.id where tp.object_type_id = ? and gd.curated_reference_qty > ? and tp.pathway_id = ? group by d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, d.id, tp.pathway_nm, tp.pathway_acc_db_cd, tp.pathway_acc_txt, tp.pathway_id order by count(gd.gene_id) desc, tp.pathway_nm, d.nm_sort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Dec 05 13 1 5s549ms 5s549ms [ User: pubeu - Total duration: 5s549ms - Times executed: 1 ]
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SELECT /* DiseasePathwayAssnsDAO */ d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tp.pathway_nm pathwaynm, tp.pathway_acc_db_cd pathwayaccdbcd, tp.pathway_acc_txt pathwayacc, tp.pathway_id pathwayId, COUNT(gd.gene_id) inferredCount, COUNT(*) OVER () fullRowCount FROM gene_disease gd INNER JOIN term_pathway tp ON gd.gene_id = tp.term_id INNER JOIN term d ON gd.disease_id = d.id WHERE tp.object_type_id = 4 AND gd.curated_reference_qty > 0 AND tp.pathway_id = '2125620' GROUP BY d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, d.id, tp.pathway_nm, tp.pathway_acc_db_cd, tp.pathway_acc_txt, tp.pathway_id ORDER BY COUNT(gd.gene_id) DESC, tp.pathway_nm, d.nm_sort LIMIT 50;
Date: 2025-12-05 13:31:47 Duration: 5s549ms Database: ctddev51 User: pubeu Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 5s549ms 5s549ms 5s549ms 1 5s549ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tp.pathway_nm pathwaynm, tp.pathway_acc_db_cd pathwayaccdbcd, tp.pathway_acc_txt pathwayacc, tp.pathway_id pathwayid, count(gd.gene_id) inferredcount, count(*) over () fullrowcount from gene_disease gd inner join term_pathway tp on gd.gene_id = tp.term_id inner join term d on gd.disease_id = d.id where tp.object_type_id = ? and gd.curated_reference_qty > ? and tp.pathway_id = ? group by d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, d.id, tp.pathway_nm, tp.pathway_acc_db_cd, tp.pathway_acc_txt, tp.pathway_id order by count(gd.gene_id) desc, tp.pathway_nm, d.nm_sort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Dec 05 13 1 5s549ms 5s549ms [ User: pubeu - Total duration: 5s549ms - Times executed: 1 ]
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SELECT /* DiseasePathwayAssnsDAO */ d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tp.pathway_nm pathwaynm, tp.pathway_acc_db_cd pathwayaccdbcd, tp.pathway_acc_txt pathwayacc, tp.pathway_id pathwayId, COUNT(gd.gene_id) inferredCount, COUNT(*) OVER () fullRowCount FROM gene_disease gd INNER JOIN term_pathway tp ON gd.gene_id = tp.term_id INNER JOIN term d ON gd.disease_id = d.id WHERE tp.object_type_id = 4 AND gd.curated_reference_qty > 0 AND tp.pathway_id = '2125620' GROUP BY d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, d.id, tp.pathway_nm, tp.pathway_acc_db_cd, tp.pathway_acc_txt, tp.pathway_id ORDER BY COUNT(gd.gene_id) DESC, tp.pathway_nm, d.nm_sort LIMIT 50;
Date: 2025-12-05 13:31:47 Duration: 5s549ms Database: ctddev51 User: pubeu Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
-
Events
Log levels
Key values
- 537 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 0 FATAL entries
- 2 ERROR entries
- 0 WARNING entries
- 5 EVENTLOG entries
Most Frequent Errors/Events
Key values
- 5 Max number of times the same event was reported
- 7 Total events found
Rank Times reported Error 1 5 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #1
Day Hour Count Dec 05 18 5 2 1 ERROR: missing FROM-clause entry for table "..."
Times Reported Most Frequent Error / Event #2
Day Hour Count Dec 05 16 1 - ERROR: missing FROM-clause entry for table "taxonterm" at character 440
Statement: SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol ,g.acc_txt geneAcc ,g.acc_db_cd geneAccDbCd ,g.id geneId ,c.nm chemnm ,c.nm_html chemnmhtml ,c.acc_txt chemacc ,c.secondary_nm casRN ,c.id chemId ,i.ixn_prose_txt ixnProse ,i.ixn_prose_html ixnProseHtml ,i.actions_txt ixnActions ,i.id ixnId ,COUNT(DISTINCT gcr.reference_id) refCount ,COUNT(DISTINCT gcr.taxon_id) taxonCount ,( SELECT STRING_AGG( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE( taxonTerm.secondary_nm, '' ) ,'|' ) ) as taxonTerms ,( SELECT STRING_AGG( distinct r.acc_txt,'|' ) ) as references ,COUNT(*) OVER() fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN (SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = $1) GROUP BY g.nm ,g.nm_sort ,g.acc_txt ,g.acc_db_cd ,g.id ,c.nm ,c.nm_html ,c.nm_sort ,c.acc_txt ,c.id ,i.ixn_prose_txt ,i.ixn_prose_html ,i.sort_txt ,i.actions_txt ,i.id ORDER BY g.nm_sort ,c.nm_sort ,i.sort_txt LIMIT 50
Date: 2025-12-05 16:12:31 Database: ctddev51 Application: User: qaeu Remote:
3 1 ERROR: syntax error at or near "..."
Times Reported Most Frequent Error / Event #3
Day Hour Count Dec 05 16 1 - ERROR: syntax error at or near "ELECT" at character 1
Statement: ELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol ,g.acc_txt geneAcc ,g.acc_db_cd geneAccDbCd ,g.id geneId ,c.nm chemnm ,c.nm_html chemnmhtml ,c.acc_txt chemacc ,c.secondary_nm casRN ,c.id chemId ,i.ixn_prose_txt ixnProse ,i.ixn_prose_html ixnProseHtml ,i.actions_txt ixnActions ,i.id ixnId ,COUNT(DISTINCT gcr.reference_id) refCount ,COUNT(DISTINCT gcr.taxon_id) taxonCount ,( SELECT STRING_AGG( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE( taxonTerm.secondary_nm, '' ) ,'|' ) ) as taxonTerms ,( SELECT STRING_AGG( distinct r.acc_txt,'|' ) ) as references ,COUNT(*) OVER() fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN (SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = $1) GROUP BY g.nm ,g.nm_sort ,g.acc_txt ,g.acc_db_cd ,g.id ,c.nm ,c.nm_html ,c.nm_sort ,c.acc_txt ,c.id ,i.ixn_prose_txt ,i.ixn_prose_html ,i.sort_txt ,i.actions_txt ,i.id ORDER BY g.nm_sort ,c.nm_sort ,i.sort_txt LIMIT 50
Date: 2025-12-05 16:09:50 Database: ctddev51 Application: User: qaeu Remote: