-
Global information
- Generated on Sun Aug 10 04:10:06 2025
- Log file: /project/archive/log/postgres/dbdev51/postgresql.log-20250809
- Parsed 5,318 log entries in 4s
- Log start from 2025-08-03 01:01:22 to 2025-08-09 17:32:41
-
Overview
Global Stats
- 53 Number of unique normalized queries
- 122 Number of queries
- 12m59s Total query duration
- 2025-08-04 14:45:21 First query
- 2025-08-09 16:52:35 Last query
- 4 queries/s at 2025-08-09 16:47:11 Query peak
- 12m59s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 12m59s Execute total duration
- 81 Number of events
- 19 Number of unique normalized events
- 29 Max number of times the same event was reported
- 0 Number of cancellation
- 1,140 Total number of automatic vacuums
- 5 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 272 Total number of sessions
- 30 sessions at 2025-08-09 16:47:04 Session peak
- 125d13h53m5s Total duration of sessions
- 11h4m49s Average duration of sessions
- 0 Average queries per session
- 2s865ms Average queries duration per session
- 11h4m46s Average idle time per session
- 290 Total number of connections
- 18 connections/s at 2025-08-09 16:47:02 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 4 queries/s Query Peak
- 2025-08-09 16:47:11 Date
SELECT Traffic
Key values
- 4 queries/s Query Peak
- 2025-08-09 16:47:11 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2025-08-07 12:34:20 Date
Queries duration
Key values
- 12m59s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 03 01 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 12 0 0ms 0ms 0ms 0ms 0ms 0ms 14 0 0ms 0ms 0ms 0ms 0ms 0ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms Aug 04 10 0 0ms 0ms 0ms 0ms 0ms 0ms 14 6 0ms 5s352ms 3s256ms 12s94ms 12s94ms 12s94ms 15 6 0ms 4s419ms 3s447ms 7s484ms 7s486ms 7s486ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms Aug 05 12 0 0ms 0ms 0ms 0ms 0ms 0ms 13 2 3s200ms 4s472ms 3s836ms 7s672ms 7s672ms 7s672ms 14 0 0ms 0ms 0ms 0ms 0ms 0ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms Aug 06 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 0 0ms 0ms 0ms 0ms 0ms 0ms 15 2 0ms 1m49s 1m16s 1m49s 1m49s 1m49s 16 3 0ms 42s875ms 38s386ms 0ms 35s389ms 42s875ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Aug 07 00 0 0ms 0ms 0ms 0ms 0ms 0ms 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 0 0ms 0ms 0ms 0ms 0ms 0ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 16 0ms 3s750ms 2s295ms 4s573ms 6s357ms 6s357ms 13 11 0ms 19s818ms 6s733ms 51s637ms 51s637ms 51s637ms 14 3 0ms 3s430ms 2s570ms 4s465ms 4s465ms 4s465ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms Aug 09 16 73 0ms 43s12ms 4s731ms 1m15s 1m27s 1m27s 17 0 0ms 0ms 0ms 0ms 0ms 0ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 03 01 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 12 0 0 0ms 0ms 0ms 0ms 14 0 0 0ms 0ms 0ms 0ms 15 0 0 0ms 0ms 0ms 0ms 16 0 0 0ms 0ms 0ms 0ms 17 0 0 0ms 0ms 0ms 0ms Aug 04 10 0 0 0ms 0ms 0ms 0ms 14 6 0 3s256ms 7s444ms 12s94ms 12s94ms 15 6 0 3s447ms 5s713ms 7s484ms 7s486ms 16 0 0 0ms 0ms 0ms 0ms Aug 05 12 0 0 0ms 0ms 0ms 0ms 13 2 0 3s836ms 7s672ms 7s672ms 7s672ms 14 0 0 0ms 0ms 0ms 0ms 15 0 0 0ms 0ms 0ms 0ms 16 0 0 0ms 0ms 0ms 0ms 17 0 0 0ms 0ms 0ms 0ms Aug 06 11 0 0 0ms 0ms 0ms 0ms 12 0 0 0ms 0ms 0ms 0ms 15 2 0 1m16s 42s733ms 1m49s 1m49s 16 3 0 38s386ms 0ms 0ms 36s893ms 17 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Aug 07 00 0 0 0ms 0ms 0ms 0ms 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 0 0 0ms 0ms 0ms 0ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 1 0 1s459ms 0ms 0ms 1s459ms 13 11 0 6s733ms 51s637ms 51s637ms 51s637ms 14 0 0 0ms 0ms 0ms 0ms 15 0 0 0ms 0ms 0ms 0ms Aug 09 16 69 0 4s826ms 1m 1m9s 1m21s 17 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 03 01 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms Aug 04 10 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms Aug 05 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms Aug 06 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Aug 07 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms Aug 09 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Aug 03 01 0 0 0.00 0.00% 09 0 0 0.00 0.00% 12 0 0 0.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 0 0.00 0.00% Aug 04 10 0 0 0.00 0.00% 14 0 6 6.00 0.00% 15 0 6 6.00 0.00% 16 0 0 0.00 0.00% Aug 05 12 0 0 0.00 0.00% 13 0 2 2.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 0 0.00 0.00% Aug 06 11 0 0 0.00 0.00% 12 0 0 0.00 0.00% 15 0 2 2.00 0.00% 16 0 3 3.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Aug 07 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 0 0.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 16 16.00 0.00% 13 0 11 11.00 0.00% 14 0 3 3.00 0.00% 15 0 0 0.00 0.00% Aug 09 16 0 73 73.00 0.00% 17 0 0 0.00 0.00% Day Hour Count Average / Second Aug 03 01 0 0.00/s 09 0 0.00/s 12 0 0.00/s 14 0 0.00/s 15 0 0.00/s 16 0 0.00/s 17 0 0.00/s Aug 04 10 4 0.00/s 14 22 0.01/s 15 36 0.01/s 16 1 0.00/s Aug 05 12 5 0.00/s 13 9 0.00/s 14 1 0.00/s 15 6 0.00/s 16 5 0.00/s 17 0 0.00/s Aug 06 11 1 0.00/s 12 0 0.00/s 15 5 0.00/s 16 9 0.00/s 17 0 0.00/s 18 0 0.00/s 19 0 0.00/s 20 0 0.00/s 21 0 0.00/s 22 0 0.00/s 23 0 0.00/s Aug 07 00 0 0.00/s 01 0 0.00/s 02 0 0.00/s 03 0 0.00/s 04 0 0.00/s 05 0 0.00/s 06 0 0.00/s 07 0 0.00/s 08 0 0.00/s 09 0 0.00/s 10 0 0.00/s 11 0 0.00/s 12 72 0.02/s 13 3 0.00/s 14 18 0.01/s 15 3 0.00/s Aug 09 16 80 0.02/s 17 10 0.00/s Day Hour Count Average Duration Average idle time Aug 03 01 12 2d16h25m39s 2d16h25m39s 09 0 0ms 0ms 12 0 0ms 0ms 14 4 2d12h30m32s 2d12h30m32s 15 0 0ms 0ms 16 0 0ms 0ms 17 0 0ms 0ms Aug 04 10 2 2m19s 2m19s 14 13 38m43s 38m41s 15 33 10m36s 10m36s 16 7 1h6m50s 1h6m50s Aug 05 12 3 378ms 378ms 13 9 19h56m34s 19h56m34s 14 1 30m40s 30m40s 15 8 49m40s 49m40s 16 0 0ms 0ms 17 0 0ms 0ms Aug 06 11 0 0ms 0ms 12 0 0ms 0ms 15 3 7h39m22s 7h38m31s 16 7 10h23m31s 10h23m15s 17 3 9h44m40s 9h44m40s 18 0 0ms 0ms 19 0 0ms 0ms 20 0 0ms 0ms 21 0 0ms 0ms 22 0 0ms 0ms 23 0 0ms 0ms Aug 07 00 0 0ms 0ms 01 0 0ms 0ms 02 0 0ms 0ms 03 0 0ms 0ms 04 0 0ms 0ms 05 0 0ms 0ms 06 0 0ms 0ms 07 0 0ms 0ms 08 0 0ms 0ms 09 0 0ms 0ms 10 0 0ms 0ms 11 0 0ms 0ms 12 65 24m23s 24m22s 13 3 29m11s 28m46s 14 18 44m10s 44m10s 15 3 30m10s 30m10s Aug 09 16 69 23h26m51s 23h26m46s 17 9 30m10s 30m10s -
Connections
Established Connections
Key values
- 18 connections Connection Peak
- 2025-08-09 16:47:02 Date
Connections per database
Key values
- ctddev51 Main Database
- 290 connections Total
Connections per user
Key values
- pubeu Main User
- 290 connections Total
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Sessions
Simultaneous sessions
Key values
- 30 sessions Session Peak
- 2025-08-09 16:47:04 Date
Histogram of session times
Key values
- 55 60000-600000ms duration
Sessions per database
Key values
- ctddev51 Main Database
- 272 sessions Total
Sessions per user
Key values
- pubeu Main User
- 272 sessions Total
Sessions per host
Key values
- 10.12.5.37 Main Host
- 272 sessions Total
Host Count Total Duration Average Duration 10.12.5.37 116 47d9h24s 9h48m6s 10.12.5.38 14 3h15m19s 13m57s 10.12.5.39 13 3h15m21s 15m1s 10.12.5.40 71 54d2h31m32s 18h17m20s 192.168.201.10 1 2h20m42s 2h20m42s 192.168.201.14 42 18d14h53m39s 10h38m25s 192.168.201.18 5 5d49s 1d9s 192.168.201.22 5 4m37s 55s515ms 192.168.201.26 1 2h30m40s 2h30m40s [local] 4 132ms 33ms Sessions per application
Key values
- unknown Main Application
- 272 sessions Total
Application Count Total Duration Average Duration pgAdmin 4 - CONN:1477352 1 8s780ms 8s780ms pgAdmin 4 - CONN:2215091 1 5m36s 5m36s pgAdmin 4 - CONN:2756446 8 19s473ms 2s434ms pgAdmin 4 - CONN:3451049 1 2h58m32s 2h58m32s pgAdmin 4 - CONN:5774697 2 9m24s 4m42s pgAdmin 4 - CONN:6006054 1 34m41s 34m41s pgAdmin 4 - CONN:6675661 1 906ms 906ms pgAdmin 4 - CONN:8727819 2 7m42s 3m51s pgAdmin 4 - DB:ctddev51 5 2h58m32s 35m42s pgAdmin 4 - DB:postgres 1 1s544ms 1s544ms psql 4 132ms 33ms unknown 245 125d6h58m5s 12h16m24s -
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 4,844 buffers Checkpoint Peak
- 2025-08-06 16:28:45 Date
- 485.231 seconds Highest write time
- 0.003 seconds Sync time
Checkpoints Wal files
Key values
- 3 files Wal files usage Peak
- 2025-08-06 16:28:45 Date
Checkpoints distance
Key values
- 114.28 Mo Distance Peak
- 2025-08-06 16:28:45 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Aug 03 01 0 0s 0s 0s 09 0 0s 0s 0s 12 0 0s 0s 0s 14 0 0s 0s 0s 15 2 0.204s 0.001s 0.226s 16 0 0s 0s 0s 17 0 0s 0s 0s Aug 04 10 0 0s 0s 0s 14 144 14.566s 0.001s 14.581s 15 2,256 226.259s 0.004s 226.341s 16 221 22.243s 0.002s 22.264s Aug 05 12 3 0.541s 0.001s 0.558s 13 0 0s 0s 0s 14 275 27.665s 0.002s 27.682s 15 11 1.316s 0.001s 1.378s 16 58 5.89s 0.001s 5.909s 17 63 6.402s 0.001s 6.417s Aug 06 11 0 0s 0s 0s 12 22 2.469s 0.001s 2.485s 15 4 0.507s 0.001s 0.522s 16 4,844 485.231s 0.002s 485.317s 17 0 0s 0s 0s 18 0 0s 0s 0s 19 0 0s 0s 0s 20 0 0s 0s 0s 21 0 0s 0s 0s 22 0 0s 0s 0s 23 0 0s 0s 0s Aug 07 00 0 0s 0s 0s 01 0 0s 0s 0s 02 0 0s 0s 0s 03 0 0s 0s 0s 04 0 0s 0s 0s 05 0 0s 0s 0s 06 0 0s 0s 0s 07 0 0s 0s 0s 08 0 0s 0s 0s 09 0 0s 0s 0s 10 110 11.107s 0.001s 11.127s 11 2,234 223.743s 0.002s 223.822s 12 2,963 296.69s 0.002s 296.709s 13 1 0.294s 0.001s 0.309s 14 187 18.958s 0.001s 18.974s 15 0 0s 0s 0s Aug 09 16 708 1.046s 0.007s 1.2s 17 486 48.657s 0.001s 48.672s Day Hour Added Removed Recycled Synced files Longest sync Average sync Aug 03 01 0 0 0 0 0s 0s 09 0 0 0 0 0s 0s 12 0 0 0 0 0s 0s 14 0 0 0 0 0s 0s 15 0 0 0 1 0.001s 0.001s 16 0 0 0 0 0s 0s 17 0 0 0 0 0s 0s Aug 04 10 0 0 0 0 0s 0s 14 0 0 0 84 0.001s 0.001s 15 0 0 1 200 0.001s 0.002s 16 0 0 0 92 0.001s 0.001s Aug 05 12 0 0 0 2 0.001s 0.001s 13 0 0 0 0 0s 0s 14 0 0 0 90 0.001s 0.001s 15 0 0 1 4 0.001s 0.001s 16 0 0 0 6 0.001s 0.001s 17 0 0 0 6 0.001s 0.001s Aug 06 11 0 0 0 0 0s 0s 12 0 0 0 1 0.001s 0.001s 15 0 0 0 4 0.001s 0.001s 16 0 0 3 50 0.001s 0.001s 17 0 0 0 0 0s 0s 18 0 0 0 0 0s 0s 19 0 0 0 0 0s 0s 20 0 0 0 0 0s 0s 21 0 0 0 0 0s 0s 22 0 0 0 0 0s 0s 23 0 0 0 0 0s 0s Aug 07 00 0 0 0 0 0s 0s 01 0 0 0 0 0s 0s 02 0 0 0 0 0s 0s 03 0 0 0 0 0s 0s 04 0 0 0 0 0s 0s 05 0 0 0 0 0s 0s 06 0 0 0 0 0s 0s 07 0 0 0 0 0s 0s 08 0 0 0 0 0s 0s 09 0 0 0 0 0s 0s 10 0 0 0 61 0.001s 0.001s 11 0 0 2 17 0.001s 0.001s 12 0 0 0 67 0.001s 0.001s 13 0 0 0 1 0.001s 0.001s 14 0 0 0 93 0.001s 0.001s 15 0 0 0 0 0s 0s Aug 09 16 0 0 2 19 0.003s 0.003s 17 0 0 0 13 0.001s 0.001s Day Hour Count Avg time (sec) Aug 03 01 0 0s 09 0 0s 12 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s Aug 04 10 0 0s 14 0 0s 15 0 0s 16 0 0s Aug 05 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s Aug 06 11 0 0s 12 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Aug 07 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s Aug 09 16 0 0s 17 0 0s Day Hour Mean distance Mean estimate Aug 03 01 0.00 kB 0.00 kB 09 0.00 kB 0.00 kB 12 0.00 kB 0.00 kB 14 0.00 kB 0.00 kB 15 0.00 kB 0.00 kB 16 0.00 kB 0.00 kB 17 0.00 kB 0.00 kB Aug 04 10 0.00 kB 0.00 kB 14 857.00 kB 857.00 kB 15 13,783.50 kB 13,783.50 kB 16 2,125.00 kB 24,069.00 kB Aug 05 12 5.00 kB 21,663.00 kB 13 0.00 kB 0.00 kB 14 2,156.00 kB 19,712.00 kB 15 70.00 kB 17,748.00 kB 16 429.00 kB 16,016.00 kB 17 540.00 kB 14,468.00 kB Aug 06 11 0.00 kB 0.00 kB 12 51.00 kB 13,027.00 kB 15 7.00 kB 11,725.00 kB 16 58,513.00 kB 58,513.00 kB 17 0.00 kB 0.00 kB 18 0.00 kB 0.00 kB 19 0.00 kB 0.00 kB 20 0.00 kB 0.00 kB 21 0.00 kB 0.00 kB 22 0.00 kB 0.00 kB 23 0.00 kB 0.00 kB Aug 07 00 0.00 kB 0.00 kB 01 0.00 kB 0.00 kB 02 0.00 kB 0.00 kB 03 0.00 kB 0.00 kB 04 0.00 kB 0.00 kB 05 0.00 kB 0.00 kB 06 0.00 kB 0.00 kB 07 0.00 kB 0.00 kB 08 0.00 kB 0.00 kB 09 0.00 kB 0.00 kB 10 511.00 kB 52,713.00 kB 11 2,804.00 kB 47,722.00 kB 12 21,171.00 kB 45,067.00 kB 13 2.00 kB 40,561.00 kB 14 1,453.00 kB 36,650.00 kB 15 0.00 kB 0.00 kB Aug 09 16 7,373.00 kB 12,739.00 kB 17 1,506.00 kB 1,506.00 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Aug 03 01 0 0 0 09 0 0 0 12 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 Aug 04 10 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 Aug 05 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 Aug 06 11 0 0 0 12 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Aug 07 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 Aug 09 16 0 0 0 17 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0.42 sec Highest CPU-cost vacuum
Table edit.exp_event
Database ctddev51 - 2025-08-07 11:22:25 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctddev51 - Date
Average Autovacuum Duration
Key values
- 0.42 sec Highest CPU-cost vacuum
Table edit.exp_event
Database ctddev51 - 2025-08-07 11:22:25 Date
Analyzes per table
Key values
- edit.exp_outcome (2) Main table analyzed (database ctddev51)
- 5 analyzes Total
Vacuums per table
Key values
- edit.exp_outcome (1139) Main table vacuumed on database ctddev51
- 1,140 vacuums Total
Tuples removed per table
Key values
- edit.exp_outcome (37164) Main table with removed tuples on database ctddev51
- 55612 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Aug 03 01 0 0 09 0 0 12 0 0 14 0 0 15 0 0 16 0 0 17 0 0 Aug 04 10 0 0 14 0 0 15 1 1 16 0 0 Aug 05 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 Aug 06 11 0 0 12 0 0 15 0 0 16 43 3 17 59 0 18 60 0 19 60 0 20 60 0 21 60 0 22 60 0 23 60 0 Aug 07 00 59 0 01 59 0 02 60 0 03 60 0 04 60 0 05 60 0 06 60 0 07 60 0 08 60 0 09 60 0 10 60 0 11 19 1 12 0 0 13 0 0 14 0 0 15 0 0 Aug 09 16 0 0 17 0 0 - 0.42 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 100 Total read queries
- 22 Total write queries
Queries by database
Key values
- unknown Main database
- 75 Requests
- 8m (ctddev51)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 132 Requests
User Request type Count Duration editeu Total 32 2m57s select 32 2m57s load Total 10 8m55s select 10 8m55s pubeu Total 26 2m10s cte 14 53s309ms select 12 1m17s unknown Total 132 9m9s cte 12 14s454ms select 120 8m54s Duration by user
Key values
- 9m9s (unknown) Main time consuming user
User Request type Count Duration editeu Total 32 2m57s select 32 2m57s load Total 10 8m55s select 10 8m55s pubeu Total 26 2m10s cte 14 53s309ms select 12 1m17s unknown Total 132 9m9s cte 12 14s454ms select 120 8m54s Queries by host
Key values
- unknown Main host
- 200 Requests
- 23m12s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 122 Requests
- 12m59s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2025-08-06 17:10:57 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 110 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 1m49s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;[ Date: 2025-08-06 15:47:03 - Database: ctddev51 - User: load - Bind query: yes ]
2 43s12ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;[ Date: 2025-08-09 16:49:37 - Bind query: yes ]
3 42s875ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;[ Date: 2025-08-06 16:24:00 - Database: ctddev51 - User: load - Bind query: yes ]
4 42s733ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;[ Date: 2025-08-06 15:48:55 - Database: ctddev51 - User: load - Bind query: yes ]
5 36s893ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;[ Date: 2025-08-06 16:13:38 - Database: ctddev51 - User: load - Bind query: yes ]
6 36s698ms SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE 'APOPTOSIS' AND li.object_type_id = 5)) ORDER BY g.nm_sort, g.id LIMIT 50;[ Date: 2025-08-09 16:48:26 - Bind query: yes ]
7 35s389ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;[ Date: 2025-08-06 16:22:42 - Database: ctddev51 - User: load - Bind query: yes ]
8 19s818ms SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;[ Date: 2025-08-07 13:12:30 - Bind query: yes ]
9 16s328ms SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;[ Date: 2025-08-07 13:12:30 - Database: ctddev51 - User: pubeu - Bind query: yes ]
10 16s16ms select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;[ Date: 2025-08-09 16:52:28 - Bind query: yes ]
11 15s491ms SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;[ Date: 2025-08-07 13:12:30 - Database: ctddev51 - User: pubeu - Bind query: yes ]
12 12s109ms SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3)) ORDER BY g.nm_sort, g.id LIMIT 50;[ Date: 2025-08-09 16:48:38 - Database: ctddev51 - User: pubeu - Bind query: yes ]
13 8s939ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2025-08-09 16:31:14 - Database: ctddev51 - User: editeu - Bind query: yes ]
14 8s673ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2025-08-09 16:47:11 - Database: ctddev51 - User: editeu - Bind query: yes ]
15 8s371ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2025-08-09 16:47:11 - Database: ctddev51 - User: editeu - Bind query: yes ]
16 8s46ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2025-08-09 16:47:11 - Database: ctddev51 - User: editeu - Bind query: yes ]
17 8s7ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2025-08-09 16:31:13 - Database: ctddev51 - User: editeu - Bind query: yes ]
18 7s950ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2025-08-09 16:47:11 - Database: ctddev51 - User: editeu - Bind query: yes ]
19 7s868ms select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2025-08-09 16:31:12 - Database: ctddev51 - User: editeu - Bind query: yes ]
20 7s836ms select count(distinct gene_id) from GENE_TAXON where taxon_id = 563947;[ Date: 2025-08-09 16:31:15 - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 4m27s 5 35s389ms 1m49s 53s528ms select t.id, t.object_type_id, t.acc_txt, db.cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from load.term t, load.term_label l, edit.db db where t.object_type_id = ? and t.id = l.term_id and t.acc_db_id = db.id;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 06 15 2 2m32s 1m16s 16 3 1m55s 38s386ms [ User: load - Total duration: 4m27s - Times executed: 5 ]
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;
Date: 2025-08-06 15:47:03 Duration: 1m49s Database: ctddev51 User: load Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;
Date: 2025-08-06 16:24:00 Duration: 42s875ms Database: ctddev51 User: load Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;
Date: 2025-08-06 15:48:55 Duration: 42s733ms Database: ctddev51 User: load Bind query: yes
2 1m7s 10 1s157ms 8s939ms 6s767ms select t.id, t.object_type_id, t.acc_txt, t.acc_db_cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from pub1.term t, pub1.term_label l where t.object_type_id = ? and t.id = l.term_id;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Aug 09 16 10 1m7s 6s767ms [ User: editeu - Total duration: 1m7s - Times executed: 10 ]
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-09 16:31:14 Duration: 8s939ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-09 16:47:11 Duration: 8s673ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;
Date: 2025-08-09 16:47:11 Duration: 8s371ms Database: ctddev51 User: editeu Bind query: yes
3 55s368ms 22 1s6ms 4s927ms 2s516ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Aug 07 12 15 35s260ms 2s350ms 14 3 7s712ms 2s570ms Aug 09 16 4 12s395ms 3s98ms [ User: pubeu - Total duration: 43s916ms - Times executed: 12 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '602110' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-08-09 16:31:13 Duration: 4s927ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '602110' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-08-09 16:47:10 Duration: 4s465ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '597156' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-08-07 12:32:30 Duration: 3s750ms Database: ctddev51 User: pubeu Bind query: yes
4 51s637ms 3 15s491ms 19s818ms 17s212ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Aug 07 13 3 51s637ms 17s212ms [ User: pubeu - Total duration: 31s819ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-07 13:12:30 Duration: 19s818ms Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-07 13:12:30 Duration: 16s328ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-07 13:12:30 Duration: 15s491ms Database: ctddev51 User: pubeu Bind query: yes
5 43s12ms 1 43s12ms 43s12ms 43s12ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select tp.term_id from term_pathway tp where upper(tp.pathway_nm) like ? and tp.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Aug 09 16 1 43s12ms 43s12ms -
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-09 16:49:37 Duration: 43s12ms Bind query: yes
6 42s182ms 12 2s231ms 5s352ms 3s515ms select t.id, t.object_type_id, t.acc_txt, t.acc_db_cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from pub2.term t, pub2.term_label l where t.object_type_id = ? and t.id = l.term_id;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Aug 04 14 6 19s538ms 3s256ms 15 4 14s971ms 3s742ms Aug 05 13 2 7s672ms 3s836ms [ User: editeu - Total duration: 42s182ms - Times executed: 12 ]
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;
Date: 2025-08-04 14:45:25 Duration: 5s352ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-05 13:51:11 Duration: 4s472ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-04 15:18:47 Duration: 4s419ms Database: ctddev51 User: editeu Bind query: yes
7 36s698ms 1 36s698ms 36s698ms 36s698ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in (( select ai.gene_id from dag_path pi inner join gene_go_annot ai on pi.descendant_object_id = ai.go_term_id inner join term_label li on li.term_id = pi.ancestor_object_id where upper(li.nm) like ? and li.object_type_id = ?)) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Aug 09 16 1 36s698ms 36s698ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE 'APOPTOSIS' AND li.object_type_id = 5)) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-08-09 16:48:26 Duration: 36s698ms Bind query: yes
8 16s16ms 1 16s16ms 16s16ms 16s16ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Aug 09 16 1 16s16ms 16s16ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-08-09 16:52:28 Duration: 16s16ms Bind query: yes
9 15s666ms 4 3s700ms 4s209ms 3s916ms select distinct gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd from gene_chem_reference gcr inner join gene_chem_reference_axn gcra on gcr.id = gcra.gene_chem_reference_id where gcra.action_type_nm in (...);Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Aug 09 16 4 15s666ms 3s916ms [ User: pubeu - Total duration: 3s700ms - Times executed: 1 ]
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SELECT /* CompsPrepDAO.cg */ DISTINCT gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd FROM gene_chem_reference gcr INNER JOIN gene_chem_reference_axn gcra ON gcr.id = gcra.gene_chem_reference_id WHERE gcra.action_type_nm IN ('activity', 'binding', 'expression');
Date: 2025-08-09 16:47:43 Duration: 4s209ms Bind query: yes
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SELECT /* CompsPrepDAO.cg */ DISTINCT gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd FROM gene_chem_reference gcr INNER JOIN gene_chem_reference_axn gcra ON gcr.id = gcra.gene_chem_reference_id WHERE gcra.action_type_nm IN ('activity', 'binding', 'expression');
Date: 2025-08-09 16:31:47 Duration: 3s949ms Bind query: yes
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SELECT /* CompsPrepDAO.cg */ DISTINCT gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd FROM gene_chem_reference gcr INNER JOIN gene_chem_reference_axn gcra ON gcr.id = gcra.gene_chem_reference_id WHERE gcra.action_type_nm IN ('activity', 'binding', 'expression');
Date: 2025-08-09 16:47:49 Duration: 3s807ms Bind query: yes
10 12s932ms 2 6s310ms 6s621ms 6s466ms select p.ancestor_object_id, p.descendant_object_id from dag_path p where p.descendant_object_id in ( select go_term_id from gene_go_annot gga where gga.taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?)) and gga.is_not = ?) and p.ancestor_object_id not in ( select c.id from term c where c.acc_txt in (...) and c.object_type_id = ( select id from object_type where cd = ?));Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Aug 09 16 2 12s932ms 6s466ms -
select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select go_term_id from GENE_GO_ANNOT gga where gga.taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')) AND gga.is_not = 'f') and p.ancestor_object_id NOT in ( SELECT c.id FROM TERM c WHERE c.acc_txt in ('ALL') AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'go'));
Date: 2025-08-09 16:47:22 Duration: 6s621ms Bind query: yes
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select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select go_term_id from GENE_GO_ANNOT gga where gga.taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')) AND gga.is_not = 'f') and p.ancestor_object_id NOT in ( SELECT c.id FROM TERM c WHERE c.acc_txt in ('ALL') AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'go'));
Date: 2025-08-09 16:31:27 Duration: 6s310ms Bind query: yes
11 12s785ms 2 4s948ms 7s836ms 6s392ms select count(distinct gene_id) from gene_taxon where taxon_id = ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Aug 09 16 2 12s785ms 6s392ms -
select count(distinct gene_id) from GENE_TAXON where taxon_id = 563947;
Date: 2025-08-09 16:31:15 Duration: 7s836ms Bind query: yes
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select count(distinct gene_id) from GENE_TAXON where taxon_id = 563947;
Date: 2025-08-09 16:47:10 Duration: 4s948ms Bind query: yes
12 12s109ms 1 12s109ms 12s109ms 12s109ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?)) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Aug 09 16 1 12s109ms 12s109ms [ User: pubeu - Total duration: 12s109ms - Times executed: 1 ]
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3)) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-08-09 16:48:38 Duration: 12s109ms Database: ctddev51 User: pubeu Bind query: yes
13 9s163ms 2 4s522ms 4s640ms 4s581ms select p.ancestor_object_id, p.descendant_object_id from dag_path p where p.descendant_object_id in ( select disease_id from gene_disease_reference gdr where gdr.source_cd in (...) and gene_id in ( select gene_id from gene_taxon where taxon_id = ?)) and p.ancestor_object_id <> ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Aug 09 16 2 9s163ms 4s581ms -
select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select disease_id from GENE_DISEASE_REFERENCE gdr where gdr.source_cd in ('C', 'O') and gene_id in ( select gene_id from GENE_TAXON where taxon_id = 563947)) and p.ancestor_object_id <> 2113225;
Date: 2025-08-09 16:31:20 Duration: 4s640ms Bind query: yes
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select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select disease_id from GENE_DISEASE_REFERENCE gdr where gdr.source_cd in ('C', 'O') and gene_id in ( select gene_id from GENE_TAXON where taxon_id = 563947)) and p.ancestor_object_id <> 2113225;
Date: 2025-08-09 16:47:15 Duration: 4s522ms Bind query: yes
14 9s113ms 4 2s252ms 2s331ms 2s278ms select r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refacc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, count(*) over () fullrowcount from reference r where r.id in ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?)) order by r.sort_txt limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Aug 09 16 4 9s113ms 2s278ms -
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2101984')) ORDER BY r.sort_txt LIMIT 50;
Date: 2025-08-09 16:51:00 Duration: 2s331ms Bind query: yes
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SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1319292')) ORDER BY r.sort_txt LIMIT 50;
Date: 2025-08-09 16:50:37 Duration: 2s268ms Bind query: yes
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SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1319292')) ORDER BY r.sort_txt LIMIT 50;
Date: 2025-08-09 16:50:33 Duration: 2s260ms Bind query: yes
15 6s430ms 1 6s430ms 6s430ms 6s430ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Aug 09 16 1 6s430ms 6s430ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-08-09 16:52:35 Duration: 6s430ms Bind query: yes
16 6s62ms 2 1s484ms 4s578ms 3s31ms select t.nm, t.nm_sort nmsort, t.acc_txt acc, t.acc_db_cd accdbcd, ? objecttypecd, null accdisplay from term t where t.id in ( select gga.go_term_id from gene_chem_reference gcr inner join gene_go_annot gga on gcr.gene_id = gga.gene_id inner join dag_node n on gga.go_term_id = n.object_id where gcr.chem_id = ? and gga.is_not = false and n.dag_id = ?) order by t.nm_sort;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Aug 09 16 2 6s62ms 3s31ms -
SELECT /* VennDAO.getTermQuerySQL */ t.nm, t.nm_sort nmsort, t.acc_txt acc, t.acc_db_cd accdbcd, 'go' objectTypeCd, NULL accDisplay FROM term t WHERE t.id IN ( SELECT /* VennChemGODAO */ gga.go_term_id FROM gene_chem_reference gcr INNER JOIN gene_go_annot gga ON gcr.gene_id = gga.gene_id INNER JOIN dag_node n ON gga.go_term_id = n.object_id where gcr.chem_id = 1319292 AND gga.is_not = false AND n.dag_id = 5) ORDER BY t.nm_sort;
Date: 2025-08-09 16:51:22 Duration: 4s578ms Bind query: yes
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SELECT /* VennDAO.getTermQuerySQL */ t.nm, t.nm_sort nmsort, t.acc_txt acc, t.acc_db_cd accdbcd, 'go' objectTypeCd, NULL accDisplay FROM term t WHERE t.id IN ( SELECT /* VennChemGODAO */ gga.go_term_id FROM gene_chem_reference gcr INNER JOIN gene_go_annot gga ON gcr.gene_id = gga.gene_id INNER JOIN dag_node n ON gga.go_term_id = n.object_id where gcr.chem_id = 1432007 AND gga.is_not = false AND n.dag_id = 5) ORDER BY t.nm_sort;
Date: 2025-08-09 16:51:23 Duration: 1s484ms Bind query: yes
17 5s784ms 3 1s459ms 2s222ms 1s928ms select distinct regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) indexchar from term t where t.object_type_id = ? order by ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Aug 07 12 1 1s459ms 1s459ms Aug 09 16 2 4s324ms 2s162ms -
SELECT /* TermBrowseIndexDAO */ DISTINCT REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') indexChar FROM term t WHERE t.object_type_id = '4' ORDER BY 1;
Date: 2025-08-09 16:31:17 Duration: 2s222ms Bind query: yes
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SELECT /* TermBrowseIndexDAO */ DISTINCT REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') indexChar FROM term t WHERE t.object_type_id = '4' ORDER BY 1;
Date: 2025-08-09 16:47:14 Duration: 2s102ms Bind query: yes
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SELECT /* TermBrowseIndexDAO */ DISTINCT REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') indexChar FROM term t WHERE t.object_type_id = '4' ORDER BY 1;
Date: 2025-08-07 12:32:33 Duration: 1s459ms Bind query: yes
18 5s713ms 2 2s733ms 2s980ms 2s856ms select distinct e.reference_acc_txt, referenceexp.create_by, referenceexp.create_tm, pref.abbr_authors_txt as author, referenceexp.email_addr, ( select string_agg(distinct studyfactor.cd, ?)) as studyfactor, referenceexp.author_summary, referenceexp.curator_comments, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, concat(eevent.collection_start_yr, ?, eevent.collection_end_yr) as enrollmentyears, ( select string_agg(distinct studyfactor.nm, ?)) as studyfactor, ( select string_agg(distinct stressorsrctype.cd, ?)) as stressorsourcecategory, stressor.chem_term_nm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, ereceptor.qty as nbrreceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, ereceptor.note as receptor_note, ( select string_agg(distinct coalesce(coalesce(nullif (cast(receptortobaccouse.pct as int), ?)) || ? || tobaccouse.nm, coalesce(coalesce(nullif (cast(receptortobaccouse.pct as int), ?)) || ?, tobaccouse.nm)), ?)) as smokerstatus, ereceptor.age || ? || age_uom.nm || ? || coalesce(age_qualifier.nm, ?) || ? as agerange, ( select string_agg(distinct coalesce(coalesce(nullif (cast(pct as int), ?)) || ? || gender.nm_html, coalesce(coalesce(nullif (cast(pct as int), ?)) || ?, gender.nm_html)), ?) from edit.exp_receptor_gender expgender left outer join edit.gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as genderdetails, ( select string_agg(distinct coalesce(coalesce(nullif (cast(receptorrace.pct as int), ?)) || ? || race.nm, coalesce(coalesce(nullif (cast(receptorrace.pct as int), ?)) || ?, race.nm)), ?)) as racedetails, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, concat(eevent.detection_limit, ?, eevent.detection_limit_uom) as detectionlimit, eevent.detection_freq as detectionfreq, medium.nm as medium_nm, eevent.exp_marker_term_nm, concat(eevent.exp_marker_lvl, ?, eevent.assay_uom) as markerlevel, eevent.assay_measurement_stat, eevent.assay_note, ( select string_agg(distinct country.nm, ?)) as country, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as region, eevent.note as eventnote, eiot.description as outcomerelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, ( select string_agg(distinct expanatomy.anatomy_term_nm, ?)) as anatomy, outcome.note as outcomenote, markerqual.actor_type_cd || markerqual.ixn_type_id || markerqual.cd as markerqualifier, markertype.nm as markertype_nm from edit.exposure e left outer join pub2.reference pref on pref.acc_txt = e.reference_acc_txt left outer join edit.reference_exp referenceexp on referenceexp.reference_acc_txt = e.reference_acc_txt left outer join edit.exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id left outer join edit.study_factor studyfactor on studyfactor.id = expstudyfactor.study_factor_id left outer join edit.exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join edit.exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join edit.exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join edit.receptor receptor on ereceptor.receptor_id = receptor.id left outer join edit.age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join edit.age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join edit.exp_event eevent on e.exp_event_id = eevent.id left outer join edit.medium medium on eevent.medium_id = medium.id left outer join edit.exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join edit.exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join edit.exp_receptor_tobacco_use receptortobaccouse on ereceptor.id = receptortobaccouse.exp_receptor_id left outer join edit.tobacco_use tobaccouse on receptortobaccouse.tobacco_use_id = tobaccouse.id left outer join edit.exp_receptor_race receptorrace on ereceptor.id = receptorrace.exp_receptor_id left outer join edit.race race on receptorrace.race_id = race.id left outer join edit.exp_event_location eventlocation on eevent.id = eventlocation.exp_event_id left outer join edit.country on eventlocation.country_id = country.id left outer join edit.exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join edit.exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join edit.exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join edit.exp_event_assay_method eventassaymethod on eevent.id = eventassaymethod.exp_event_id left outer join edit.actor_form_type markerqual on markerqual.id = eevent.exp_marker_actor_form_type_id left outer join edit.exp_marker_type markertype on eevent.exp_marker_type_id = markertype.id where e.reference_acc_txt = ? group by e.reference_acc_txt, author, referenceexp.create_by, referenceexp.create_tm, referenceexp.email_addr, referenceexp.author_summary, referenceexp.curator_comments, pref.abbr_authors_txt, enrollmentyears, stressor.chem_term_nm, stressorsrcdetails, stressorsampleqty, stressornote, nbrreceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, receptor_note, agerange, detectionlimit, detectionfreq, medium_nm, eevent.exp_marker_term_nm, markerlevel, eevent.assay_measurement_stat, eevent.assay_note, eventnote, outcomerelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, outcomenote, ereceptor.id, markerqualifier, markertype_nm, eevent.id;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Aug 04 15 2 5s713ms 2s856ms -
select distinct e.reference_acc_txt, referenceExp.create_by, referenceExp.create_tm, pref.abbr_authors_txt as author, referenceExp.email_addr, ( Select STRING_AGG(distinct studyFactor.cd, '|')) as studyFactor, referenceExp.author_summary, referenceExp.curator_comments, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associatedStudyTitles, CONCAT(eevent.collection_start_yr, '-', eevent.collection_end_yr) as enrollmentYears, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as studyFactor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressorSourceCategory, stressor.chem_term_nm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, ereceptor.qty as nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smokerStatus, ereceptor.age || ' ' || age_uom.nm || ' (' || COALESCE(age_qualifier.nm, '') || ')' as ageRange, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm_html, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm_html)), '|') from edit.exp_receptor_gender expgender left outer join edit.gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as genderDetails, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as raceDetails, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as assayMethods, CONCAT(eevent.detection_limit, ' ', eevent.detection_limit_uom) as detectionLimit, eevent.detection_freq as detectionFreq, medium.nm as medium_nm, eevent.exp_marker_term_nm, CONCAT(eevent.exp_marker_lvl, ' ', eevent.assay_uom) as markerLevel, eevent.assay_measurement_stat, eevent.assay_note, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as stateOrProvince, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as eventNote, eiot.description as outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcomeNote, markerQual.actor_type_cd || markerQual.ixn_type_id || markerQual.cd as markerQualifier, markerType.nm as markerType_nm from edit.exposure e left outer join pub2.reference pref on pref.acc_txt = e.reference_acc_txt left outer join edit.reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join edit.exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join edit.study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join edit.exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join edit.exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join edit.exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join edit.receptor receptor on ereceptor.receptor_id = receptor.id left outer join edit.age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join edit.age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join edit.exp_event eevent on e.exp_event_id = eevent.id left outer join edit.medium medium on eevent.medium_id = medium.id left outer join edit.exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join edit.exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join edit.exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join edit.tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join edit.exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join edit.race race on receptorRace.race_id = race.id left outer join edit.exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join edit.country on eventLocation.country_id = country.id left outer join edit.exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join edit.exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join edit.exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join edit.exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id left outer join edit.actor_form_type markerQual on markerQual.id = eevent.exp_marker_actor_form_type_id left outer join edit.exp_marker_type markerType on eevent.exp_marker_type_id = markerType.id where e.reference_acc_txt = '31103473' group by e.reference_acc_txt, author, referenceExp.create_by, referenceExp.create_tm, referenceExp.email_addr, referenceExp.author_summary, referenceExp.curator_comments, pref.abbr_authors_txt, enrollmentYears, stressor.chem_term_nm, stressorSrcDetails, stressorSampleQty, stressorNote, nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, receptor_note, ageRange, detectionLimit, detectionFreq, medium_nm, eevent.exp_marker_term_nm, markerLevel, eevent.assay_measurement_stat, eevent.assay_note, eventNote, outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, outcomeNote, ereceptor.id, markerQualifier, markerType_nm, eevent.id;
Date: 2025-08-04 15:34:26 Duration: 2s980ms Bind query: yes
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select distinct e.reference_acc_txt, referenceExp.create_by, referenceExp.create_tm, pref.abbr_authors_txt as author, referenceExp.email_addr, ( Select STRING_AGG(distinct studyFactor.cd, '|')) as studyFactor, referenceExp.author_summary, referenceExp.curator_comments, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associatedStudyTitles, CONCAT(eevent.collection_start_yr, '-', eevent.collection_end_yr) as enrollmentYears, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as studyFactor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressorSourceCategory, stressor.chem_term_nm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, ereceptor.qty as nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smokerStatus, ereceptor.age || ' ' || age_uom.nm || ' (' || COALESCE(age_qualifier.nm, '') || ')' as ageRange, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm_html, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm_html)), '|') from edit.exp_receptor_gender expgender left outer join edit.gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as genderDetails, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as raceDetails, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as assayMethods, CONCAT(eevent.detection_limit, ' ', eevent.detection_limit_uom) as detectionLimit, eevent.detection_freq as detectionFreq, medium.nm as medium_nm, eevent.exp_marker_term_nm, CONCAT(eevent.exp_marker_lvl, ' ', eevent.assay_uom) as markerLevel, eevent.assay_measurement_stat, eevent.assay_note, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as stateOrProvince, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as eventNote, eiot.description as outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcomeNote, markerQual.actor_type_cd || markerQual.ixn_type_id || markerQual.cd as markerQualifier, markerType.nm as markerType_nm from edit.exposure e left outer join pub2.reference pref on pref.acc_txt = e.reference_acc_txt left outer join edit.reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join edit.exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join edit.study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join edit.exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join edit.exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join edit.exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join edit.receptor receptor on ereceptor.receptor_id = receptor.id left outer join edit.age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join edit.age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join edit.exp_event eevent on e.exp_event_id = eevent.id left outer join edit.medium medium on eevent.medium_id = medium.id left outer join edit.exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join edit.exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join edit.exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join edit.tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join edit.exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join edit.race race on receptorRace.race_id = race.id left outer join edit.exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join edit.country on eventLocation.country_id = country.id left outer join edit.exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join edit.exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join edit.exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join edit.exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id left outer join edit.actor_form_type markerQual on markerQual.id = eevent.exp_marker_actor_form_type_id left outer join edit.exp_marker_type markerType on eevent.exp_marker_type_id = markerType.id where e.reference_acc_txt = '31103473' group by e.reference_acc_txt, author, referenceExp.create_by, referenceExp.create_tm, referenceExp.email_addr, referenceExp.author_summary, referenceExp.curator_comments, pref.abbr_authors_txt, enrollmentYears, stressor.chem_term_nm, stressorSrcDetails, stressorSampleQty, stressorNote, nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, receptor_note, ageRange, detectionLimit, detectionFreq, medium_nm, eevent.exp_marker_term_nm, markerLevel, eevent.assay_measurement_stat, eevent.assay_note, eventNote, outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, outcomeNote, ereceptor.id, markerQualifier, markerType_nm, eevent.id;
Date: 2025-08-04 15:34:14 Duration: 2s733ms Bind query: yes
19 5s550ms 1 5s550ms 5s550ms 5s550ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in (( select gd.gene_id from term_label l inner join dag_path dp on l.term_id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(l.nm) like ? and l.object_type_id = ?)) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Aug 09 16 1 5s550ms 5s550ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE 'GLAUCOMA' AND l.object_type_id = 3)) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-08-09 16:47:49 Duration: 5s550ms Bind query: yes
20 5s451ms 1 5s451ms 5s451ms 5s451ms select ? "Input", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( select string_agg(stm.slim_term_nm, ? order by stm.slim_term_nm) from slim_term_mapping stm where stm.mapped_term_id = d.id) "DiseaseCategories", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(distinct r.acc_txt, ?) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id where (d.id = ?) group by g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by d.nm_sort, g.nm, "DirectEvidence", c.nm;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Aug 09 16 1 5s451ms 5s451ms -
SELECT /* BatchDiseaseGeneAssnsDAO */ 'asthenia' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2101987) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-08-09 16:51:44 Duration: 5s451ms Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 22 55s368ms 1s6ms 4s927ms 2s516ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 07 12 15 35s260ms 2s350ms 14 3 7s712ms 2s570ms Aug 09 16 4 12s395ms 3s98ms [ User: pubeu - Total duration: 43s916ms - Times executed: 12 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '602110' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-08-09 16:31:13 Duration: 4s927ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '602110' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-08-09 16:47:10 Duration: 4s465ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '597156' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-08-07 12:32:30 Duration: 3s750ms Database: ctddev51 User: pubeu Bind query: yes
2 12 42s182ms 2s231ms 5s352ms 3s515ms select t.id, t.object_type_id, t.acc_txt, t.acc_db_cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from pub2.term t, pub2.term_label l where t.object_type_id = ? and t.id = l.term_id;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Aug 04 14 6 19s538ms 3s256ms 15 4 14s971ms 3s742ms Aug 05 13 2 7s672ms 3s836ms [ User: editeu - Total duration: 42s182ms - Times executed: 12 ]
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;
Date: 2025-08-04 14:45:25 Duration: 5s352ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-05 13:51:11 Duration: 4s472ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-04 15:18:47 Duration: 4s419ms Database: ctddev51 User: editeu Bind query: yes
3 10 1m7s 1s157ms 8s939ms 6s767ms select t.id, t.object_type_id, t.acc_txt, t.acc_db_cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from pub1.term t, pub1.term_label l where t.object_type_id = ? and t.id = l.term_id;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Aug 09 16 10 1m7s 6s767ms [ User: editeu - Total duration: 1m7s - Times executed: 10 ]
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-09 16:31:14 Duration: 8s939ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-09 16:47:11 Duration: 8s673ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;
Date: 2025-08-09 16:47:11 Duration: 8s371ms Database: ctddev51 User: editeu Bind query: yes
4 5 4m27s 35s389ms 1m49s 53s528ms select t.id, t.object_type_id, t.acc_txt, db.cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from load.term t, load.term_label l, edit.db db where t.object_type_id = ? and t.id = l.term_id and t.acc_db_id = db.id;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Aug 06 15 2 2m32s 1m16s 16 3 1m55s 38s386ms [ User: load - Total duration: 4m27s - Times executed: 5 ]
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;
Date: 2025-08-06 15:47:03 Duration: 1m49s Database: ctddev51 User: load Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;
Date: 2025-08-06 16:24:00 Duration: 42s875ms Database: ctddev51 User: load Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;
Date: 2025-08-06 15:48:55 Duration: 42s733ms Database: ctddev51 User: load Bind query: yes
5 4 15s666ms 3s700ms 4s209ms 3s916ms select distinct gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd from gene_chem_reference gcr inner join gene_chem_reference_axn gcra on gcr.id = gcra.gene_chem_reference_id where gcra.action_type_nm in (...);Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Aug 09 16 4 15s666ms 3s916ms [ User: pubeu - Total duration: 3s700ms - Times executed: 1 ]
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SELECT /* CompsPrepDAO.cg */ DISTINCT gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd FROM gene_chem_reference gcr INNER JOIN gene_chem_reference_axn gcra ON gcr.id = gcra.gene_chem_reference_id WHERE gcra.action_type_nm IN ('activity', 'binding', 'expression');
Date: 2025-08-09 16:47:43 Duration: 4s209ms Bind query: yes
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SELECT /* CompsPrepDAO.cg */ DISTINCT gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd FROM gene_chem_reference gcr INNER JOIN gene_chem_reference_axn gcra ON gcr.id = gcra.gene_chem_reference_id WHERE gcra.action_type_nm IN ('activity', 'binding', 'expression');
Date: 2025-08-09 16:31:47 Duration: 3s949ms Bind query: yes
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SELECT /* CompsPrepDAO.cg */ DISTINCT gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd FROM gene_chem_reference gcr INNER JOIN gene_chem_reference_axn gcra ON gcr.id = gcra.gene_chem_reference_id WHERE gcra.action_type_nm IN ('activity', 'binding', 'expression');
Date: 2025-08-09 16:47:49 Duration: 3s807ms Bind query: yes
6 4 9s113ms 2s252ms 2s331ms 2s278ms select r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refacc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, count(*) over () fullrowcount from reference r where r.id in ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?)) order by r.sort_txt limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Aug 09 16 4 9s113ms 2s278ms -
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2101984')) ORDER BY r.sort_txt LIMIT 50;
Date: 2025-08-09 16:51:00 Duration: 2s331ms Bind query: yes
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SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1319292')) ORDER BY r.sort_txt LIMIT 50;
Date: 2025-08-09 16:50:37 Duration: 2s268ms Bind query: yes
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SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1319292')) ORDER BY r.sort_txt LIMIT 50;
Date: 2025-08-09 16:50:33 Duration: 2s260ms Bind query: yes
7 3 51s637ms 15s491ms 19s818ms 17s212ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Aug 07 13 3 51s637ms 17s212ms [ User: pubeu - Total duration: 31s819ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-07 13:12:30 Duration: 19s818ms Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-07 13:12:30 Duration: 16s328ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-07 13:12:30 Duration: 15s491ms Database: ctddev51 User: pubeu Bind query: yes
8 3 5s784ms 1s459ms 2s222ms 1s928ms select distinct regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) indexchar from term t where t.object_type_id = ? order by ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Aug 07 12 1 1s459ms 1s459ms Aug 09 16 2 4s324ms 2s162ms -
SELECT /* TermBrowseIndexDAO */ DISTINCT REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') indexChar FROM term t WHERE t.object_type_id = '4' ORDER BY 1;
Date: 2025-08-09 16:31:17 Duration: 2s222ms Bind query: yes
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SELECT /* TermBrowseIndexDAO */ DISTINCT REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') indexChar FROM term t WHERE t.object_type_id = '4' ORDER BY 1;
Date: 2025-08-09 16:47:14 Duration: 2s102ms Bind query: yes
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SELECT /* TermBrowseIndexDAO */ DISTINCT REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') indexChar FROM term t WHERE t.object_type_id = '4' ORDER BY 1;
Date: 2025-08-07 12:32:33 Duration: 1s459ms Bind query: yes
9 3 3s411ms 1s15ms 1s361ms 1s137ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where stressorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or exposuremarkerterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Aug 07 13 2 2s377ms 1s188ms Aug 09 16 1 1s33ms 1s33ms -
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where stressorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1272867') or exposureMarkerTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1272867') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-08-07 13:13:47 Duration: 1s361ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where stressorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1412088') or exposureMarkerTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1412088') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-08-09 16:52:05 Duration: 1s33ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where stressorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1272867') or exposureMarkerTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1272867') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-08-07 13:13:52 Duration: 1s15ms Bind query: yes
10 2 12s932ms 6s310ms 6s621ms 6s466ms select p.ancestor_object_id, p.descendant_object_id from dag_path p where p.descendant_object_id in ( select go_term_id from gene_go_annot gga where gga.taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?)) and gga.is_not = ?) and p.ancestor_object_id not in ( select c.id from term c where c.acc_txt in (...) and c.object_type_id = ( select id from object_type where cd = ?));Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Aug 09 16 2 12s932ms 6s466ms -
select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select go_term_id from GENE_GO_ANNOT gga where gga.taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')) AND gga.is_not = 'f') and p.ancestor_object_id NOT in ( SELECT c.id FROM TERM c WHERE c.acc_txt in ('ALL') AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'go'));
Date: 2025-08-09 16:47:22 Duration: 6s621ms Bind query: yes
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select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select go_term_id from GENE_GO_ANNOT gga where gga.taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')) AND gga.is_not = 'f') and p.ancestor_object_id NOT in ( SELECT c.id FROM TERM c WHERE c.acc_txt in ('ALL') AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'go'));
Date: 2025-08-09 16:31:27 Duration: 6s310ms Bind query: yes
11 2 12s785ms 4s948ms 7s836ms 6s392ms select count(distinct gene_id) from gene_taxon where taxon_id = ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Aug 09 16 2 12s785ms 6s392ms -
select count(distinct gene_id) from GENE_TAXON where taxon_id = 563947;
Date: 2025-08-09 16:31:15 Duration: 7s836ms Bind query: yes
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select count(distinct gene_id) from GENE_TAXON where taxon_id = 563947;
Date: 2025-08-09 16:47:10 Duration: 4s948ms Bind query: yes
12 2 9s163ms 4s522ms 4s640ms 4s581ms select p.ancestor_object_id, p.descendant_object_id from dag_path p where p.descendant_object_id in ( select disease_id from gene_disease_reference gdr where gdr.source_cd in (...) and gene_id in ( select gene_id from gene_taxon where taxon_id = ?)) and p.ancestor_object_id <> ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Aug 09 16 2 9s163ms 4s581ms -
select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select disease_id from GENE_DISEASE_REFERENCE gdr where gdr.source_cd in ('C', 'O') and gene_id in ( select gene_id from GENE_TAXON where taxon_id = 563947)) and p.ancestor_object_id <> 2113225;
Date: 2025-08-09 16:31:20 Duration: 4s640ms Bind query: yes
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select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select disease_id from GENE_DISEASE_REFERENCE gdr where gdr.source_cd in ('C', 'O') and gene_id in ( select gene_id from GENE_TAXON where taxon_id = 563947)) and p.ancestor_object_id <> 2113225;
Date: 2025-08-09 16:47:15 Duration: 4s522ms Bind query: yes
13 2 6s62ms 1s484ms 4s578ms 3s31ms select t.nm, t.nm_sort nmsort, t.acc_txt acc, t.acc_db_cd accdbcd, ? objecttypecd, null accdisplay from term t where t.id in ( select gga.go_term_id from gene_chem_reference gcr inner join gene_go_annot gga on gcr.gene_id = gga.gene_id inner join dag_node n on gga.go_term_id = n.object_id where gcr.chem_id = ? and gga.is_not = false and n.dag_id = ?) order by t.nm_sort;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Aug 09 16 2 6s62ms 3s31ms -
SELECT /* VennDAO.getTermQuerySQL */ t.nm, t.nm_sort nmsort, t.acc_txt acc, t.acc_db_cd accdbcd, 'go' objectTypeCd, NULL accDisplay FROM term t WHERE t.id IN ( SELECT /* VennChemGODAO */ gga.go_term_id FROM gene_chem_reference gcr INNER JOIN gene_go_annot gga ON gcr.gene_id = gga.gene_id INNER JOIN dag_node n ON gga.go_term_id = n.object_id where gcr.chem_id = 1319292 AND gga.is_not = false AND n.dag_id = 5) ORDER BY t.nm_sort;
Date: 2025-08-09 16:51:22 Duration: 4s578ms Bind query: yes
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SELECT /* VennDAO.getTermQuerySQL */ t.nm, t.nm_sort nmsort, t.acc_txt acc, t.acc_db_cd accdbcd, 'go' objectTypeCd, NULL accDisplay FROM term t WHERE t.id IN ( SELECT /* VennChemGODAO */ gga.go_term_id FROM gene_chem_reference gcr INNER JOIN gene_go_annot gga ON gcr.gene_id = gga.gene_id INNER JOIN dag_node n ON gga.go_term_id = n.object_id where gcr.chem_id = 1432007 AND gga.is_not = false AND n.dag_id = 5) ORDER BY t.nm_sort;
Date: 2025-08-09 16:51:23 Duration: 1s484ms Bind query: yes
14 2 5s713ms 2s733ms 2s980ms 2s856ms select distinct e.reference_acc_txt, referenceexp.create_by, referenceexp.create_tm, pref.abbr_authors_txt as author, referenceexp.email_addr, ( select string_agg(distinct studyfactor.cd, ?)) as studyfactor, referenceexp.author_summary, referenceexp.curator_comments, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, concat(eevent.collection_start_yr, ?, eevent.collection_end_yr) as enrollmentyears, ( select string_agg(distinct studyfactor.nm, ?)) as studyfactor, ( select string_agg(distinct stressorsrctype.cd, ?)) as stressorsourcecategory, stressor.chem_term_nm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, ereceptor.qty as nbrreceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, ereceptor.note as receptor_note, ( select string_agg(distinct coalesce(coalesce(nullif (cast(receptortobaccouse.pct as int), ?)) || ? || tobaccouse.nm, coalesce(coalesce(nullif (cast(receptortobaccouse.pct as int), ?)) || ?, tobaccouse.nm)), ?)) as smokerstatus, ereceptor.age || ? || age_uom.nm || ? || coalesce(age_qualifier.nm, ?) || ? as agerange, ( select string_agg(distinct coalesce(coalesce(nullif (cast(pct as int), ?)) || ? || gender.nm_html, coalesce(coalesce(nullif (cast(pct as int), ?)) || ?, gender.nm_html)), ?) from edit.exp_receptor_gender expgender left outer join edit.gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as genderdetails, ( select string_agg(distinct coalesce(coalesce(nullif (cast(receptorrace.pct as int), ?)) || ? || race.nm, coalesce(coalesce(nullif (cast(receptorrace.pct as int), ?)) || ?, race.nm)), ?)) as racedetails, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, concat(eevent.detection_limit, ?, eevent.detection_limit_uom) as detectionlimit, eevent.detection_freq as detectionfreq, medium.nm as medium_nm, eevent.exp_marker_term_nm, concat(eevent.exp_marker_lvl, ?, eevent.assay_uom) as markerlevel, eevent.assay_measurement_stat, eevent.assay_note, ( select string_agg(distinct country.nm, ?)) as country, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as region, eevent.note as eventnote, eiot.description as outcomerelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, ( select string_agg(distinct expanatomy.anatomy_term_nm, ?)) as anatomy, outcome.note as outcomenote, markerqual.actor_type_cd || markerqual.ixn_type_id || markerqual.cd as markerqualifier, markertype.nm as markertype_nm from edit.exposure e left outer join pub2.reference pref on pref.acc_txt = e.reference_acc_txt left outer join edit.reference_exp referenceexp on referenceexp.reference_acc_txt = e.reference_acc_txt left outer join edit.exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id left outer join edit.study_factor studyfactor on studyfactor.id = expstudyfactor.study_factor_id left outer join edit.exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join edit.exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join edit.exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join edit.receptor receptor on ereceptor.receptor_id = receptor.id left outer join edit.age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join edit.age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join edit.exp_event eevent on e.exp_event_id = eevent.id left outer join edit.medium medium on eevent.medium_id = medium.id left outer join edit.exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join edit.exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join edit.exp_receptor_tobacco_use receptortobaccouse on ereceptor.id = receptortobaccouse.exp_receptor_id left outer join edit.tobacco_use tobaccouse on receptortobaccouse.tobacco_use_id = tobaccouse.id left outer join edit.exp_receptor_race receptorrace on ereceptor.id = receptorrace.exp_receptor_id left outer join edit.race race on receptorrace.race_id = race.id left outer join edit.exp_event_location eventlocation on eevent.id = eventlocation.exp_event_id left outer join edit.country on eventlocation.country_id = country.id left outer join edit.exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join edit.exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join edit.exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join edit.exp_event_assay_method eventassaymethod on eevent.id = eventassaymethod.exp_event_id left outer join edit.actor_form_type markerqual on markerqual.id = eevent.exp_marker_actor_form_type_id left outer join edit.exp_marker_type markertype on eevent.exp_marker_type_id = markertype.id where e.reference_acc_txt = ? group by e.reference_acc_txt, author, referenceexp.create_by, referenceexp.create_tm, referenceexp.email_addr, referenceexp.author_summary, referenceexp.curator_comments, pref.abbr_authors_txt, enrollmentyears, stressor.chem_term_nm, stressorsrcdetails, stressorsampleqty, stressornote, nbrreceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, receptor_note, agerange, detectionlimit, detectionfreq, medium_nm, eevent.exp_marker_term_nm, markerlevel, eevent.assay_measurement_stat, eevent.assay_note, eventnote, outcomerelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, outcomenote, ereceptor.id, markerqualifier, markertype_nm, eevent.id;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Aug 04 15 2 5s713ms 2s856ms -
select distinct e.reference_acc_txt, referenceExp.create_by, referenceExp.create_tm, pref.abbr_authors_txt as author, referenceExp.email_addr, ( Select STRING_AGG(distinct studyFactor.cd, '|')) as studyFactor, referenceExp.author_summary, referenceExp.curator_comments, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associatedStudyTitles, CONCAT(eevent.collection_start_yr, '-', eevent.collection_end_yr) as enrollmentYears, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as studyFactor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressorSourceCategory, stressor.chem_term_nm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, ereceptor.qty as nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smokerStatus, ereceptor.age || ' ' || age_uom.nm || ' (' || COALESCE(age_qualifier.nm, '') || ')' as ageRange, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm_html, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm_html)), '|') from edit.exp_receptor_gender expgender left outer join edit.gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as genderDetails, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as raceDetails, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as assayMethods, CONCAT(eevent.detection_limit, ' ', eevent.detection_limit_uom) as detectionLimit, eevent.detection_freq as detectionFreq, medium.nm as medium_nm, eevent.exp_marker_term_nm, CONCAT(eevent.exp_marker_lvl, ' ', eevent.assay_uom) as markerLevel, eevent.assay_measurement_stat, eevent.assay_note, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as stateOrProvince, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as eventNote, eiot.description as outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcomeNote, markerQual.actor_type_cd || markerQual.ixn_type_id || markerQual.cd as markerQualifier, markerType.nm as markerType_nm from edit.exposure e left outer join pub2.reference pref on pref.acc_txt = e.reference_acc_txt left outer join edit.reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join edit.exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join edit.study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join edit.exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join edit.exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join edit.exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join edit.receptor receptor on ereceptor.receptor_id = receptor.id left outer join edit.age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join edit.age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join edit.exp_event eevent on e.exp_event_id = eevent.id left outer join edit.medium medium on eevent.medium_id = medium.id left outer join edit.exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join edit.exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join edit.exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join edit.tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join edit.exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join edit.race race on receptorRace.race_id = race.id left outer join edit.exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join edit.country on eventLocation.country_id = country.id left outer join edit.exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join edit.exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join edit.exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join edit.exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id left outer join edit.actor_form_type markerQual on markerQual.id = eevent.exp_marker_actor_form_type_id left outer join edit.exp_marker_type markerType on eevent.exp_marker_type_id = markerType.id where e.reference_acc_txt = '31103473' group by e.reference_acc_txt, author, referenceExp.create_by, referenceExp.create_tm, referenceExp.email_addr, referenceExp.author_summary, referenceExp.curator_comments, pref.abbr_authors_txt, enrollmentYears, stressor.chem_term_nm, stressorSrcDetails, stressorSampleQty, stressorNote, nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, receptor_note, ageRange, detectionLimit, detectionFreq, medium_nm, eevent.exp_marker_term_nm, markerLevel, eevent.assay_measurement_stat, eevent.assay_note, eventNote, outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, outcomeNote, ereceptor.id, markerQualifier, markerType_nm, eevent.id;
Date: 2025-08-04 15:34:26 Duration: 2s980ms Bind query: yes
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select distinct e.reference_acc_txt, referenceExp.create_by, referenceExp.create_tm, pref.abbr_authors_txt as author, referenceExp.email_addr, ( Select STRING_AGG(distinct studyFactor.cd, '|')) as studyFactor, referenceExp.author_summary, referenceExp.curator_comments, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associatedStudyTitles, CONCAT(eevent.collection_start_yr, '-', eevent.collection_end_yr) as enrollmentYears, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as studyFactor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressorSourceCategory, stressor.chem_term_nm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, ereceptor.qty as nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smokerStatus, ereceptor.age || ' ' || age_uom.nm || ' (' || COALESCE(age_qualifier.nm, '') || ')' as ageRange, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm_html, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm_html)), '|') from edit.exp_receptor_gender expgender left outer join edit.gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as genderDetails, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as raceDetails, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as assayMethods, CONCAT(eevent.detection_limit, ' ', eevent.detection_limit_uom) as detectionLimit, eevent.detection_freq as detectionFreq, medium.nm as medium_nm, eevent.exp_marker_term_nm, CONCAT(eevent.exp_marker_lvl, ' ', eevent.assay_uom) as markerLevel, eevent.assay_measurement_stat, eevent.assay_note, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as stateOrProvince, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as eventNote, eiot.description as outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcomeNote, markerQual.actor_type_cd || markerQual.ixn_type_id || markerQual.cd as markerQualifier, markerType.nm as markerType_nm from edit.exposure e left outer join pub2.reference pref on pref.acc_txt = e.reference_acc_txt left outer join edit.reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join edit.exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join edit.study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join edit.exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join edit.exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join edit.exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join edit.receptor receptor on ereceptor.receptor_id = receptor.id left outer join edit.age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join edit.age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join edit.exp_event eevent on e.exp_event_id = eevent.id left outer join edit.medium medium on eevent.medium_id = medium.id left outer join edit.exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join edit.exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join edit.exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join edit.tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join edit.exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join edit.race race on receptorRace.race_id = race.id left outer join edit.exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join edit.country on eventLocation.country_id = country.id left outer join edit.exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join edit.exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join edit.exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join edit.exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id left outer join edit.actor_form_type markerQual on markerQual.id = eevent.exp_marker_actor_form_type_id left outer join edit.exp_marker_type markerType on eevent.exp_marker_type_id = markerType.id where e.reference_acc_txt = '31103473' group by e.reference_acc_txt, author, referenceExp.create_by, referenceExp.create_tm, referenceExp.email_addr, referenceExp.author_summary, referenceExp.curator_comments, pref.abbr_authors_txt, enrollmentYears, stressor.chem_term_nm, stressorSrcDetails, stressorSampleQty, stressorNote, nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, receptor_note, ageRange, detectionLimit, detectionFreq, medium_nm, eevent.exp_marker_term_nm, markerLevel, eevent.assay_measurement_stat, eevent.assay_note, eventNote, outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, outcomeNote, ereceptor.id, markerQualifier, markerType_nm, eevent.id;
Date: 2025-08-04 15:34:14 Duration: 2s733ms Bind query: yes
15 2 4s199ms 2s14ms 2s184ms 2s99ms select gene_id, chem_id from gene_chem_reference r where gene_id in ( select gene_id from gene_taxon where taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?))) and gene_id in ( select gene_id from gene_go_annot where taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?)) and is_not = ? and go_term_id not in ( select c.id from term c where c.acc_txt in (...) and c.object_type_id = ( select id from object_type where cd = ?))) and r.id not in ( select gene_chem_reference_id from gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Aug 09 16 2 4s199ms 2s99ms -
select gene_id, chem_id from GENE_CHEM_REFERENCE r where gene_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon'))) and gene_id in ( select gene_id from GENE_GO_ANNOT where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')) AND is_not = 'f' and go_term_id not in ( SELECT c.id FROM TERM c WHERE c.acc_txt in ('ALL') AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'go'))) and r.id NOT in ( SELECT gene_chem_reference_id FROM GENE_CHEM_REFERENCE_AXN WHERE action_degree_type_nm = 'does not affect');
Date: 2025-08-09 16:47:32 Duration: 2s184ms Bind query: yes
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select gene_id, chem_id from GENE_CHEM_REFERENCE r where gene_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon'))) and gene_id in ( select gene_id from GENE_GO_ANNOT where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')) AND is_not = 'f' and go_term_id not in ( SELECT c.id FROM TERM c WHERE c.acc_txt in ('ALL') AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'go'))) and r.id NOT in ( SELECT gene_chem_reference_id FROM GENE_CHEM_REFERENCE_AXN WHERE action_degree_type_nm = 'does not affect');
Date: 2025-08-09 16:31:37 Duration: 2s14ms Bind query: yes
16 2 3s114ms 1s503ms 1s610ms 1s557ms select gene_id, chem_id from gene_chem_reference r where gene_id in ( select gene_id from gene_taxon where taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?))) and gene_id in ( select term_id from term_pathway p where p.object_type_id = ( select id from object_type where cd = ?) and term_id in ( select gene_id from gene_taxon where taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?)))) and r.id not in ( select gene_chem_reference_id from gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Aug 09 16 2 3s114ms 1s557ms -
select gene_id, chem_id from GENE_CHEM_REFERENCE r where gene_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon'))) and gene_id in ( select term_id from TERM_PATHWAY p where p.object_type_id = ( select id from OBJECT_TYPE where cd = 'gene') and term_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')))) and r.id NOT in ( SELECT gene_chem_reference_id FROM GENE_CHEM_REFERENCE_AXN WHERE action_degree_type_nm = 'does not affect');
Date: 2025-08-09 16:47:36 Duration: 1s610ms Bind query: yes
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select gene_id, chem_id from GENE_CHEM_REFERENCE r where gene_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon'))) and gene_id in ( select term_id from TERM_PATHWAY p where p.object_type_id = ( select id from OBJECT_TYPE where cd = 'gene') and term_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')))) and r.id NOT in ( SELECT gene_chem_reference_id FROM GENE_CHEM_REFERENCE_AXN WHERE action_degree_type_nm = 'does not affect');
Date: 2025-08-09 16:31:41 Duration: 1s503ms Bind query: yes
17 2 2s922ms 1s272ms 1s649ms 1s461ms select fg.nm fromgenesymbol, fg.acc_txt fromgeneacc, tg.nm togenesymbol, tg.acc_txt togeneacc, ft.nm fromtaxonnm, ft.secondary_nm fromtaxoncommonnm, ft.acc_txt fromtaxonacc, tt.nm totaxonnm, tt.secondary_nm totaxoncommonnm, tt.acc_txt totaxonacc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( select string_agg(ggt.throughput_txt, ? order by ggt.throughput_txt) from gene_gene_ref_throughput ggt where ggt.gene_gene_reference_id = ggr.id) throughput, count(*) over () fullrowcount from gene_gene_reference ggr inner join term fg on ggr.from_gene_id = fg.id inner join term tg on ggr.to_gene_id = tg.id inner join term ft on ggr.from_taxon_id = ft.id inner join term tt on ggr.to_taxon_id = tt.id where ggr.reference_id = ? order by fg.nm_sort, tg.nm_sort limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Aug 09 16 2 2s922ms 1s461ms -
SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2025-08-09 16:51:07 Duration: 1s649ms Bind query: yes
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2025-08-09 16:51:09 Duration: 1s272ms Bind query: yes
18 2 2s799ms 1s363ms 1s435ms 1s399ms select p.ancestor_object_id, p.descendant_object_id from dag_path p where p.descendant_object_id in ( select chem_id from gene_chem_reference gcr where gcr.gene_id in ( select gene_id from gene_taxon where taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?)))) and p.ancestor_object_id != ( select c.id from term c where c.acc_txt = ? and c.object_type_id = ( select id from object_type where cd = ?));Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Aug 09 16 2 2s799ms 1s399ms -
select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select chem_id from GENE_CHEM_REFERENCE gcr where gcr.gene_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')))) AND p.ancestor_object_id != ( SELECT c.id FROM TERM c WHERE c.acc_txt = 'D' AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'chem'));
Date: 2025-08-09 16:47:26 Duration: 1s435ms Bind query: yes
-
select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select chem_id from GENE_CHEM_REFERENCE gcr where gcr.gene_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')))) AND p.ancestor_object_id != ( SELECT c.id FROM TERM c WHERE c.acc_txt = 'D' AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'chem'));
Date: 2025-08-09 16:31:31 Duration: 1s363ms Bind query: yes
19 2 2s474ms 1s123ms 1s351ms 1s237ms select gene_id, chem_id from gene_chem_reference r where gene_id in ( select gene_id from gene_taxon where taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?))) and gene_id in ( select gene_id from gene_disease_reference where source_cd in (...));Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Aug 09 16 2 2s474ms 1s237ms -
select gene_id, chem_id from GENE_CHEM_REFERENCE r where gene_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon'))) and gene_id in ( select gene_id from gene_disease_reference where source_cd in ('C', 'O'));
Date: 2025-08-09 16:47:27 Duration: 1s351ms Bind query: yes
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select gene_id, chem_id from GENE_CHEM_REFERENCE r where gene_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon'))) and gene_id in ( select gene_id from gene_disease_reference where source_cd in ('C', 'O'));
Date: 2025-08-09 16:31:32 Duration: 1s123ms Bind query: yes
20 2 2s303ms 1s144ms 1s159ms 1s151ms select n.object_acc_txt, n.acc_db_cd, n.id, n.object_id, n.dag_id from dag_node n inner join dag d on d.id = n.dag_id where d.object_type_id = ? and d.priority_seq = ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Aug 09 16 2 2s303ms 1s151ms [ User: pubeu - Total duration: 2s303ms - Times executed: 2 ]
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SELECT /* GOVocDAO.getRootNode */ n.object_acc_txt, n.acc_db_cd, n.id, n.object_id, n.dag_id FROM dag_node n INNER JOIN dag d ON d.id = n.dag_id WHERE d.object_type_id = '5' AND d.priority_seq = 1;
Date: 2025-08-09 16:31:07 Duration: 1s159ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT /* GOVocDAO.getRootNode */ n.object_acc_txt, n.acc_db_cd, n.id, n.object_id, n.dag_id FROM dag_node n INNER JOIN dag d ON d.id = n.dag_id WHERE d.object_type_id = '5' AND d.priority_seq = 1;
Date: 2025-08-09 16:47:05 Duration: 1s144ms Database: ctddev51 User: pubeu Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 35s389ms 1m49s 53s528ms 5 4m27s select t.id, t.object_type_id, t.acc_txt, db.cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from load.term t, load.term_label l, edit.db db where t.object_type_id = ? and t.id = l.term_id and t.acc_db_id = db.id;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 06 15 2 2m32s 1m16s 16 3 1m55s 38s386ms [ User: load - Total duration: 4m27s - Times executed: 5 ]
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;
Date: 2025-08-06 15:47:03 Duration: 1m49s Database: ctddev51 User: load Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;
Date: 2025-08-06 16:24:00 Duration: 42s875ms Database: ctddev51 User: load Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, db.CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from load.TERM t, load.TERM_LABEL l, edit.DB db where t.object_type_id = 2 and t.id = l.term_id and t.acc_db_id = db.id;
Date: 2025-08-06 15:48:55 Duration: 42s733ms Database: ctddev51 User: load Bind query: yes
2 43s12ms 43s12ms 43s12ms 1 43s12ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select tp.term_id from term_pathway tp where upper(tp.pathway_nm) like ? and tp.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Aug 09 16 1 43s12ms 43s12ms -
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-09 16:49:37 Duration: 43s12ms Bind query: yes
3 36s698ms 36s698ms 36s698ms 1 36s698ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in (( select ai.gene_id from dag_path pi inner join gene_go_annot ai on pi.descendant_object_id = ai.go_term_id inner join term_label li on li.term_id = pi.ancestor_object_id where upper(li.nm) like ? and li.object_type_id = ?)) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Aug 09 16 1 36s698ms 36s698ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE 'APOPTOSIS' AND li.object_type_id = 5)) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-08-09 16:48:26 Duration: 36s698ms Bind query: yes
4 15s491ms 19s818ms 17s212ms 3 51s637ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Aug 07 13 3 51s637ms 17s212ms [ User: pubeu - Total duration: 31s819ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-07 13:12:30 Duration: 19s818ms Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-07 13:12:30 Duration: 16s328ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1272867') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-08-07 13:12:30 Duration: 15s491ms Database: ctddev51 User: pubeu Bind query: yes
5 16s16ms 16s16ms 16s16ms 1 16s16ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Aug 09 16 1 16s16ms 16s16ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-08-09 16:52:28 Duration: 16s16ms Bind query: yes
6 12s109ms 12s109ms 12s109ms 1 12s109ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?)) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Aug 09 16 1 12s109ms 12s109ms [ User: pubeu - Total duration: 12s109ms - Times executed: 1 ]
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3)) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-08-09 16:48:38 Duration: 12s109ms Database: ctddev51 User: pubeu Bind query: yes
7 1s157ms 8s939ms 6s767ms 10 1m7s select t.id, t.object_type_id, t.acc_txt, t.acc_db_cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from pub1.term t, pub1.term_label l where t.object_type_id = ? and t.id = l.term_id;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Aug 09 16 10 1m7s 6s767ms [ User: editeu - Total duration: 1m7s - Times executed: 10 ]
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-09 16:31:14 Duration: 8s939ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-09 16:47:11 Duration: 8s673ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;
Date: 2025-08-09 16:47:11 Duration: 8s371ms Database: ctddev51 User: editeu Bind query: yes
8 6s310ms 6s621ms 6s466ms 2 12s932ms select p.ancestor_object_id, p.descendant_object_id from dag_path p where p.descendant_object_id in ( select go_term_id from gene_go_annot gga where gga.taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?)) and gga.is_not = ?) and p.ancestor_object_id not in ( select c.id from term c where c.acc_txt in (...) and c.object_type_id = ( select id from object_type where cd = ?));Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Aug 09 16 2 12s932ms 6s466ms -
select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select go_term_id from GENE_GO_ANNOT gga where gga.taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')) AND gga.is_not = 'f') and p.ancestor_object_id NOT in ( SELECT c.id FROM TERM c WHERE c.acc_txt in ('ALL') AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'go'));
Date: 2025-08-09 16:47:22 Duration: 6s621ms Bind query: yes
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select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select go_term_id from GENE_GO_ANNOT gga where gga.taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')) AND gga.is_not = 'f') and p.ancestor_object_id NOT in ( SELECT c.id FROM TERM c WHERE c.acc_txt in ('ALL') AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'go'));
Date: 2025-08-09 16:31:27 Duration: 6s310ms Bind query: yes
9 6s430ms 6s430ms 6s430ms 1 6s430ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Aug 09 16 1 6s430ms 6s430ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-08-09 16:52:35 Duration: 6s430ms Bind query: yes
10 4s948ms 7s836ms 6s392ms 2 12s785ms select count(distinct gene_id) from gene_taxon where taxon_id = ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Aug 09 16 2 12s785ms 6s392ms -
select count(distinct gene_id) from GENE_TAXON where taxon_id = 563947;
Date: 2025-08-09 16:31:15 Duration: 7s836ms Bind query: yes
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select count(distinct gene_id) from GENE_TAXON where taxon_id = 563947;
Date: 2025-08-09 16:47:10 Duration: 4s948ms Bind query: yes
11 5s550ms 5s550ms 5s550ms 1 5s550ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in (( select gd.gene_id from term_label l inner join dag_path dp on l.term_id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(l.nm) like ? and l.object_type_id = ?)) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Aug 09 16 1 5s550ms 5s550ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE 'GLAUCOMA' AND l.object_type_id = 3)) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-08-09 16:47:49 Duration: 5s550ms Bind query: yes
12 5s451ms 5s451ms 5s451ms 1 5s451ms select ? "Input", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( select string_agg(stm.slim_term_nm, ? order by stm.slim_term_nm) from slim_term_mapping stm where stm.mapped_term_id = d.id) "DiseaseCategories", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(distinct r.acc_txt, ?) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id where (d.id = ?) group by g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by d.nm_sort, g.nm, "DirectEvidence", c.nm;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Aug 09 16 1 5s451ms 5s451ms -
SELECT /* BatchDiseaseGeneAssnsDAO */ 'asthenia' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2101987) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-08-09 16:51:44 Duration: 5s451ms Bind query: yes
13 4s522ms 4s640ms 4s581ms 2 9s163ms select p.ancestor_object_id, p.descendant_object_id from dag_path p where p.descendant_object_id in ( select disease_id from gene_disease_reference gdr where gdr.source_cd in (...) and gene_id in ( select gene_id from gene_taxon where taxon_id = ?)) and p.ancestor_object_id <> ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Aug 09 16 2 9s163ms 4s581ms -
select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select disease_id from GENE_DISEASE_REFERENCE gdr where gdr.source_cd in ('C', 'O') and gene_id in ( select gene_id from GENE_TAXON where taxon_id = 563947)) and p.ancestor_object_id <> 2113225;
Date: 2025-08-09 16:31:20 Duration: 4s640ms Bind query: yes
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select p.ancestor_object_id, p.descendant_object_id from DAG_PATH p where p.descendant_object_id in ( select disease_id from GENE_DISEASE_REFERENCE gdr where gdr.source_cd in ('C', 'O') and gene_id in ( select gene_id from GENE_TAXON where taxon_id = 563947)) and p.ancestor_object_id <> 2113225;
Date: 2025-08-09 16:47:15 Duration: 4s522ms Bind query: yes
14 3s700ms 4s209ms 3s916ms 4 15s666ms select distinct gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd from gene_chem_reference gcr inner join gene_chem_reference_axn gcra on gcr.id = gcra.gene_chem_reference_id where gcra.action_type_nm in (...);Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Aug 09 16 4 15s666ms 3s916ms [ User: pubeu - Total duration: 3s700ms - Times executed: 1 ]
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SELECT /* CompsPrepDAO.cg */ DISTINCT gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd FROM gene_chem_reference gcr INNER JOIN gene_chem_reference_axn gcra ON gcr.id = gcra.gene_chem_reference_id WHERE gcra.action_type_nm IN ('activity', 'binding', 'expression');
Date: 2025-08-09 16:47:43 Duration: 4s209ms Bind query: yes
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SELECT /* CompsPrepDAO.cg */ DISTINCT gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd FROM gene_chem_reference gcr INNER JOIN gene_chem_reference_axn gcra ON gcr.id = gcra.gene_chem_reference_id WHERE gcra.action_type_nm IN ('activity', 'binding', 'expression');
Date: 2025-08-09 16:31:47 Duration: 3s949ms Bind query: yes
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SELECT /* CompsPrepDAO.cg */ DISTINCT gcr.chem_id, gcr.gene_id, gcra.action_degree_type_nm, gcra.action_type_cd FROM gene_chem_reference gcr INNER JOIN gene_chem_reference_axn gcra ON gcr.id = gcra.gene_chem_reference_id WHERE gcra.action_type_nm IN ('activity', 'binding', 'expression');
Date: 2025-08-09 16:47:49 Duration: 3s807ms Bind query: yes
15 2s231ms 5s352ms 3s515ms 12 42s182ms select t.id, t.object_type_id, t.acc_txt, t.acc_db_cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from pub2.term t, pub2.term_label l where t.object_type_id = ? and t.id = l.term_id;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Aug 04 14 6 19s538ms 3s256ms 15 4 14s971ms 3s742ms Aug 05 13 2 7s672ms 3s836ms [ User: editeu - Total duration: 42s182ms - Times executed: 12 ]
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;
Date: 2025-08-04 14:45:25 Duration: 5s352ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-05 13:51:11 Duration: 4s472ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2025-08-04 15:18:47 Duration: 4s419ms Database: ctddev51 User: editeu Bind query: yes
16 1s484ms 4s578ms 3s31ms 2 6s62ms select t.nm, t.nm_sort nmsort, t.acc_txt acc, t.acc_db_cd accdbcd, ? objecttypecd, null accdisplay from term t where t.id in ( select gga.go_term_id from gene_chem_reference gcr inner join gene_go_annot gga on gcr.gene_id = gga.gene_id inner join dag_node n on gga.go_term_id = n.object_id where gcr.chem_id = ? and gga.is_not = false and n.dag_id = ?) order by t.nm_sort;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Aug 09 16 2 6s62ms 3s31ms -
SELECT /* VennDAO.getTermQuerySQL */ t.nm, t.nm_sort nmsort, t.acc_txt acc, t.acc_db_cd accdbcd, 'go' objectTypeCd, NULL accDisplay FROM term t WHERE t.id IN ( SELECT /* VennChemGODAO */ gga.go_term_id FROM gene_chem_reference gcr INNER JOIN gene_go_annot gga ON gcr.gene_id = gga.gene_id INNER JOIN dag_node n ON gga.go_term_id = n.object_id where gcr.chem_id = 1319292 AND gga.is_not = false AND n.dag_id = 5) ORDER BY t.nm_sort;
Date: 2025-08-09 16:51:22 Duration: 4s578ms Bind query: yes
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SELECT /* VennDAO.getTermQuerySQL */ t.nm, t.nm_sort nmsort, t.acc_txt acc, t.acc_db_cd accdbcd, 'go' objectTypeCd, NULL accDisplay FROM term t WHERE t.id IN ( SELECT /* VennChemGODAO */ gga.go_term_id FROM gene_chem_reference gcr INNER JOIN gene_go_annot gga ON gcr.gene_id = gga.gene_id INNER JOIN dag_node n ON gga.go_term_id = n.object_id where gcr.chem_id = 1432007 AND gga.is_not = false AND n.dag_id = 5) ORDER BY t.nm_sort;
Date: 2025-08-09 16:51:23 Duration: 1s484ms Bind query: yes
17 2s733ms 2s980ms 2s856ms 2 5s713ms select distinct e.reference_acc_txt, referenceexp.create_by, referenceexp.create_tm, pref.abbr_authors_txt as author, referenceexp.email_addr, ( select string_agg(distinct studyfactor.cd, ?)) as studyfactor, referenceexp.author_summary, referenceexp.curator_comments, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, concat(eevent.collection_start_yr, ?, eevent.collection_end_yr) as enrollmentyears, ( select string_agg(distinct studyfactor.nm, ?)) as studyfactor, ( select string_agg(distinct stressorsrctype.cd, ?)) as stressorsourcecategory, stressor.chem_term_nm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, ereceptor.qty as nbrreceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, ereceptor.note as receptor_note, ( select string_agg(distinct coalesce(coalesce(nullif (cast(receptortobaccouse.pct as int), ?)) || ? || tobaccouse.nm, coalesce(coalesce(nullif (cast(receptortobaccouse.pct as int), ?)) || ?, tobaccouse.nm)), ?)) as smokerstatus, ereceptor.age || ? || age_uom.nm || ? || coalesce(age_qualifier.nm, ?) || ? as agerange, ( select string_agg(distinct coalesce(coalesce(nullif (cast(pct as int), ?)) || ? || gender.nm_html, coalesce(coalesce(nullif (cast(pct as int), ?)) || ?, gender.nm_html)), ?) from edit.exp_receptor_gender expgender left outer join edit.gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as genderdetails, ( select string_agg(distinct coalesce(coalesce(nullif (cast(receptorrace.pct as int), ?)) || ? || race.nm, coalesce(coalesce(nullif (cast(receptorrace.pct as int), ?)) || ?, race.nm)), ?)) as racedetails, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, concat(eevent.detection_limit, ?, eevent.detection_limit_uom) as detectionlimit, eevent.detection_freq as detectionfreq, medium.nm as medium_nm, eevent.exp_marker_term_nm, concat(eevent.exp_marker_lvl, ?, eevent.assay_uom) as markerlevel, eevent.assay_measurement_stat, eevent.assay_note, ( select string_agg(distinct country.nm, ?)) as country, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as region, eevent.note as eventnote, eiot.description as outcomerelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, ( select string_agg(distinct expanatomy.anatomy_term_nm, ?)) as anatomy, outcome.note as outcomenote, markerqual.actor_type_cd || markerqual.ixn_type_id || markerqual.cd as markerqualifier, markertype.nm as markertype_nm from edit.exposure e left outer join pub2.reference pref on pref.acc_txt = e.reference_acc_txt left outer join edit.reference_exp referenceexp on referenceexp.reference_acc_txt = e.reference_acc_txt left outer join edit.exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id left outer join edit.study_factor studyfactor on studyfactor.id = expstudyfactor.study_factor_id left outer join edit.exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join edit.exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join edit.exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join edit.receptor receptor on ereceptor.receptor_id = receptor.id left outer join edit.age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join edit.age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join edit.exp_event eevent on e.exp_event_id = eevent.id left outer join edit.medium medium on eevent.medium_id = medium.id left outer join edit.exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join edit.exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join edit.exp_receptor_tobacco_use receptortobaccouse on ereceptor.id = receptortobaccouse.exp_receptor_id left outer join edit.tobacco_use tobaccouse on receptortobaccouse.tobacco_use_id = tobaccouse.id left outer join edit.exp_receptor_race receptorrace on ereceptor.id = receptorrace.exp_receptor_id left outer join edit.race race on receptorrace.race_id = race.id left outer join edit.exp_event_location eventlocation on eevent.id = eventlocation.exp_event_id left outer join edit.country on eventlocation.country_id = country.id left outer join edit.exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join edit.exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join edit.exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join edit.exp_event_assay_method eventassaymethod on eevent.id = eventassaymethod.exp_event_id left outer join edit.actor_form_type markerqual on markerqual.id = eevent.exp_marker_actor_form_type_id left outer join edit.exp_marker_type markertype on eevent.exp_marker_type_id = markertype.id where e.reference_acc_txt = ? group by e.reference_acc_txt, author, referenceexp.create_by, referenceexp.create_tm, referenceexp.email_addr, referenceexp.author_summary, referenceexp.curator_comments, pref.abbr_authors_txt, enrollmentyears, stressor.chem_term_nm, stressorsrcdetails, stressorsampleqty, stressornote, nbrreceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, receptor_note, agerange, detectionlimit, detectionfreq, medium_nm, eevent.exp_marker_term_nm, markerlevel, eevent.assay_measurement_stat, eevent.assay_note, eventnote, outcomerelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, outcomenote, ereceptor.id, markerqualifier, markertype_nm, eevent.id;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Aug 04 15 2 5s713ms 2s856ms -
select distinct e.reference_acc_txt, referenceExp.create_by, referenceExp.create_tm, pref.abbr_authors_txt as author, referenceExp.email_addr, ( Select STRING_AGG(distinct studyFactor.cd, '|')) as studyFactor, referenceExp.author_summary, referenceExp.curator_comments, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associatedStudyTitles, CONCAT(eevent.collection_start_yr, '-', eevent.collection_end_yr) as enrollmentYears, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as studyFactor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressorSourceCategory, stressor.chem_term_nm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, ereceptor.qty as nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smokerStatus, ereceptor.age || ' ' || age_uom.nm || ' (' || COALESCE(age_qualifier.nm, '') || ')' as ageRange, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm_html, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm_html)), '|') from edit.exp_receptor_gender expgender left outer join edit.gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as genderDetails, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as raceDetails, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as assayMethods, CONCAT(eevent.detection_limit, ' ', eevent.detection_limit_uom) as detectionLimit, eevent.detection_freq as detectionFreq, medium.nm as medium_nm, eevent.exp_marker_term_nm, CONCAT(eevent.exp_marker_lvl, ' ', eevent.assay_uom) as markerLevel, eevent.assay_measurement_stat, eevent.assay_note, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as stateOrProvince, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as eventNote, eiot.description as outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcomeNote, markerQual.actor_type_cd || markerQual.ixn_type_id || markerQual.cd as markerQualifier, markerType.nm as markerType_nm from edit.exposure e left outer join pub2.reference pref on pref.acc_txt = e.reference_acc_txt left outer join edit.reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join edit.exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join edit.study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join edit.exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join edit.exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join edit.exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join edit.receptor receptor on ereceptor.receptor_id = receptor.id left outer join edit.age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join edit.age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join edit.exp_event eevent on e.exp_event_id = eevent.id left outer join edit.medium medium on eevent.medium_id = medium.id left outer join edit.exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join edit.exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join edit.exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join edit.tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join edit.exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join edit.race race on receptorRace.race_id = race.id left outer join edit.exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join edit.country on eventLocation.country_id = country.id left outer join edit.exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join edit.exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join edit.exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join edit.exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id left outer join edit.actor_form_type markerQual on markerQual.id = eevent.exp_marker_actor_form_type_id left outer join edit.exp_marker_type markerType on eevent.exp_marker_type_id = markerType.id where e.reference_acc_txt = '31103473' group by e.reference_acc_txt, author, referenceExp.create_by, referenceExp.create_tm, referenceExp.email_addr, referenceExp.author_summary, referenceExp.curator_comments, pref.abbr_authors_txt, enrollmentYears, stressor.chem_term_nm, stressorSrcDetails, stressorSampleQty, stressorNote, nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, receptor_note, ageRange, detectionLimit, detectionFreq, medium_nm, eevent.exp_marker_term_nm, markerLevel, eevent.assay_measurement_stat, eevent.assay_note, eventNote, outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, outcomeNote, ereceptor.id, markerQualifier, markerType_nm, eevent.id;
Date: 2025-08-04 15:34:26 Duration: 2s980ms Bind query: yes
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select distinct e.reference_acc_txt, referenceExp.create_by, referenceExp.create_tm, pref.abbr_authors_txt as author, referenceExp.email_addr, ( Select STRING_AGG(distinct studyFactor.cd, '|')) as studyFactor, referenceExp.author_summary, referenceExp.curator_comments, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associatedStudyTitles, CONCAT(eevent.collection_start_yr, '-', eevent.collection_end_yr) as enrollmentYears, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as studyFactor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressorSourceCategory, stressor.chem_term_nm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, ereceptor.qty as nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smokerStatus, ereceptor.age || ' ' || age_uom.nm || ' (' || COALESCE(age_qualifier.nm, '') || ')' as ageRange, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm_html, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm_html)), '|') from edit.exp_receptor_gender expgender left outer join edit.gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as genderDetails, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as raceDetails, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as assayMethods, CONCAT(eevent.detection_limit, ' ', eevent.detection_limit_uom) as detectionLimit, eevent.detection_freq as detectionFreq, medium.nm as medium_nm, eevent.exp_marker_term_nm, CONCAT(eevent.exp_marker_lvl, ' ', eevent.assay_uom) as markerLevel, eevent.assay_measurement_stat, eevent.assay_note, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as stateOrProvince, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as eventNote, eiot.description as outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcomeNote, markerQual.actor_type_cd || markerQual.ixn_type_id || markerQual.cd as markerQualifier, markerType.nm as markerType_nm from edit.exposure e left outer join pub2.reference pref on pref.acc_txt = e.reference_acc_txt left outer join edit.reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join edit.exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join edit.study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join edit.exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join edit.exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join edit.exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join edit.receptor receptor on ereceptor.receptor_id = receptor.id left outer join edit.age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join edit.age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join edit.exp_event eevent on e.exp_event_id = eevent.id left outer join edit.medium medium on eevent.medium_id = medium.id left outer join edit.exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join edit.exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join edit.exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join edit.tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join edit.exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join edit.race race on receptorRace.race_id = race.id left outer join edit.exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join edit.country on eventLocation.country_id = country.id left outer join edit.exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join edit.exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join edit.exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join edit.exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id left outer join edit.actor_form_type markerQual on markerQual.id = eevent.exp_marker_actor_form_type_id left outer join edit.exp_marker_type markerType on eevent.exp_marker_type_id = markerType.id where e.reference_acc_txt = '31103473' group by e.reference_acc_txt, author, referenceExp.create_by, referenceExp.create_tm, referenceExp.email_addr, referenceExp.author_summary, referenceExp.curator_comments, pref.abbr_authors_txt, enrollmentYears, stressor.chem_term_nm, stressorSrcDetails, stressorSampleQty, stressorNote, nbrReceptors, receptor.nm, ereceptor.term_nm, ereceptor.term_acc_txt, receptor_note, ageRange, detectionLimit, detectionFreq, medium_nm, eevent.exp_marker_term_nm, markerLevel, eevent.assay_measurement_stat, eevent.assay_note, eventNote, outcomeRelationship, outcome.disease_term_nm, outcome.phenotype_action_degree_type_nm, outcome.phenotype_term_nm, outcomeNote, ereceptor.id, markerQualifier, markerType_nm, eevent.id;
Date: 2025-08-04 15:34:14 Duration: 2s733ms Bind query: yes
18 1s6ms 4s927ms 2s516ms 22 55s368ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Aug 07 12 15 35s260ms 2s350ms 14 3 7s712ms 2s570ms Aug 09 16 4 12s395ms 3s98ms [ User: pubeu - Total duration: 43s916ms - Times executed: 12 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '602110' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-08-09 16:31:13 Duration: 4s927ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '602110' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-08-09 16:47:10 Duration: 4s465ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '597156' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-08-07 12:32:30 Duration: 3s750ms Database: ctddev51 User: pubeu Bind query: yes
19 2s252ms 2s331ms 2s278ms 4 9s113ms select r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refacc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, count(*) over () fullrowcount from reference r where r.id in ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?)) order by r.sort_txt limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Aug 09 16 4 9s113ms 2s278ms -
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2101984')) ORDER BY r.sort_txt LIMIT 50;
Date: 2025-08-09 16:51:00 Duration: 2s331ms Bind query: yes
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SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1319292')) ORDER BY r.sort_txt LIMIT 50;
Date: 2025-08-09 16:50:37 Duration: 2s268ms Bind query: yes
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SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1319292')) ORDER BY r.sort_txt LIMIT 50;
Date: 2025-08-09 16:50:33 Duration: 2s260ms Bind query: yes
20 2s14ms 2s184ms 2s99ms 2 4s199ms select gene_id, chem_id from gene_chem_reference r where gene_id in ( select gene_id from gene_taxon where taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?))) and gene_id in ( select gene_id from gene_go_annot where taxon_id = ( select id from term where acc_txt = ? and object_type_id = ( select id from object_type where cd = ?)) and is_not = ? and go_term_id not in ( select c.id from term c where c.acc_txt in (...) and c.object_type_id = ( select id from object_type where cd = ?))) and r.id not in ( select gene_chem_reference_id from gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Aug 09 16 2 4s199ms 2s99ms -
select gene_id, chem_id from GENE_CHEM_REFERENCE r where gene_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon'))) and gene_id in ( select gene_id from GENE_GO_ANNOT where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')) AND is_not = 'f' and go_term_id not in ( SELECT c.id FROM TERM c WHERE c.acc_txt in ('ALL') AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'go'))) and r.id NOT in ( SELECT gene_chem_reference_id FROM GENE_CHEM_REFERENCE_AXN WHERE action_degree_type_nm = 'does not affect');
Date: 2025-08-09 16:47:32 Duration: 2s184ms Bind query: yes
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select gene_id, chem_id from GENE_CHEM_REFERENCE r where gene_id in ( select gene_id from GENE_TAXON where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon'))) and gene_id in ( select gene_id from GENE_GO_ANNOT where taxon_id = ( select id from TERM where acc_txt = '9606' and object_type_id = ( select id from OBJECT_TYPE where cd = 'taxon')) AND is_not = 'f' and go_term_id not in ( SELECT c.id FROM TERM c WHERE c.acc_txt in ('ALL') AND c.object_type_id = ( select id from OBJECT_TYPE where cd = 'go'))) and r.id NOT in ( SELECT gene_chem_reference_id FROM GENE_CHEM_REFERENCE_AXN WHERE action_degree_type_nm = 'does not affect');
Date: 2025-08-09 16:31:37 Duration: 2s14ms Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
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Events
Log levels
Key values
- 2,677 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 13 FATAL entries
- 21 ERROR entries
- 0 WARNING entries
- 47 EVENTLOG entries
Most Frequent Errors/Events
Key values
- 29 Max number of times the same event was reported
- 81 Total events found
Rank Times reported Error 1 29 LOG: could not receive data from client: Connection reset by peer
Times Reported Most Frequent Error / Event #1
Day Hour Count Aug 03 01 12 Aug 04 10 2 16 7 Aug 05 15 3 Aug 06 15 2 16 3 2 11 FATAL: terminating connection due to administrator command
Times Reported Most Frequent Error / Event #2
Day Hour Count Aug 03 14 4 Aug 09 16 7 3 10 ERROR: syntax error at or near "..."
Times Reported Most Frequent Error / Event #3
Day Hour Count Aug 05 16 3 Aug 06 16 1 Aug 07 11 3 12 3 - ERROR: syntax error at or near "to" at character 44
- ERROR: syntax error at or near "when" at character 52
- ERROR: syntax error at or near "CASE" at character 26
Statement: update reference_exp set curator_comments to Null when curtator_comments = ''
Date: 2025-08-05 16:44:33
Statement: update reference_exp set curator_comments = Null when curtator_comments = ''
Date: 2025-08-05 16:44:50
Statement: set curator_comments = CASE WHEN curator_comments = '' THEN Null ELSE curator_comments END, author_summary = CASE WHEN author_summary = '' THEN Null ELSE author_summary END where curator_comments = '' OR author_summary = '';
Date: 2025-08-05 16:54:39
4 7 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #4
Day Hour Count Aug 06 15 1 16 3 17 3 5 6 LOG: using stale statistics instead of current ones because stats collector is not responding
Times Reported Most Frequent Error / Event #5
Day Hour Count Aug 03 01 1 09 1 12 1 14 1 16 1 17 1 6 4 ERROR: current transaction is aborted, commands ignored until end of transaction block
Times Reported Most Frequent Error / Event #6
Day Hour Count Aug 05 16 1 Aug 06 16 2 Aug 07 11 1 - ERROR: current transaction is aborted, commands ignored until end of transaction block
- ERROR: current transaction is aborted, commands ignored until end of transaction block
- ERROR: current transaction is aborted, commands ignored until end of transaction block
Statement: update reference_exp set curator_comments = Null where curtator_comments = ''
Date: 2025-08-05 16:45:07
Statement: BEGIN transaction;
Date: 2025-08-06 16:10:31
Statement: UPDATE exp_stressor SET note = CASE WHEN note = '' THEN NULL ELSE note END, src_details = CASE WHEN src_details = '' THEN NULL ELSE src_details END WHERE note = '' OR src_details = '';
Date: 2025-08-06 16:10:49
7 2 LOG: database system was interrupted; last known up at ...
Times Reported Most Frequent Error / Event #7
Day Hour Count Aug 09 16 2 8 1 ERROR: column "..." does not exist
Times Reported Most Frequent Error / Event #8
Day Hour Count Aug 05 16 1 - ERROR: column "curtator_comments" does not exist at character 58
Hint: Perhaps you meant to reference the column "reference_exp.curator_comments".
Statement: update reference_exp set curator_comments = Null where curtator_comments = ''Date: 2025-08-05 16:45:54
9 1 FATAL: password authentication failed for user "..."
Times Reported Most Frequent Error / Event #9
Day Hour Count Aug 09 16 1 - FATAL: password authentication failed for user "edit"
Detail: Connection matched pg_hba.conf line 85: "host all all 192.168.201.0/24 md5 "
Date: 2025-08-09 16:30:25
10 1 LOG: parameter "..." changed to "..."
Times Reported Most Frequent Error / Event #10
Day Hour Count Aug 09 17 1 11 1 FATAL: connection to client lost
Times Reported Most Frequent Error / Event #11
Day Hour Count Aug 04 14 1 - FATAL: connection to client lost
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub2.TERM t ,pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID
Date: 2025-08-04 14:47:08
12 1 ERROR: permission denied for table ...
Times Reported Most Frequent Error / Event #12
Day Hour Count Aug 04 15 1 - ERROR: permission denied for table exp_event
Statement: UPDATE exp_event SET detection_limit_uom = NULL WHERE trim(detection_limit_uom) = '';
Date: 2025-08-04 15:30:27 Database: ctddev51 Application: pgAdmin 4 - CONN:688485 User: editeu Remote:
13 1 LOG: could not send data to client: Connection reset by peer
Times Reported Most Frequent Error / Event #13
Day Hour Count Aug 04 14 1 - LOG: could not send data to client: Connection reset by peer
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub2.TERM t ,pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID
Date: 2025-08-04 14:47:08 Database: ctddev51 Application: User: editeu Remote:
14 1 ERROR: column "..." must appear in the GROUP BY clause or be used in an aggregate function
Times Reported Most Frequent Error / Event #14
Day Hour Count Aug 05 16 1 - ERROR: column "reference_exp.author_summary" must appear in the GROUP BY clause or be used in an aggregate function at character 35
Statement: select count(*) curator_comments, author_summary from reference_exp where curator_comments = ' ' OR author_summary = ' '
Date: 2025-08-05 16:42:01 Database: ctddev51 Application: pgAdmin 4 - CONN:1742140 User: edit Remote:
15 1 ERROR: invalid input syntax for type integer: ...
Times Reported Most Frequent Error / Event #15
Day Hour Count Aug 06 16 1 - ERROR: invalid input syntax for type integer: "" at character 191
Statement: UPDATE exp_stressor SET note = CASE WHEN note = '' THEN NULL ELSE note END, sample_qty = CASE WHEN sample_qty = '' THEN NULL ELSE sample_qty END WHERE note = '' OR sample_qty = '';
Date: 2025-08-06 16:06:33 Database: ctddev51 Application: pgAdmin 4 - CONN:6755732 User: edit Remote:
16 1 ERROR: function pg_relod_conf() does not exist
Times Reported Most Frequent Error / Event #16
Day Hour Count Aug 09 17 1 - ERROR: function pg_relod_conf() does not exist at character 8
Hint: No function matches the given name and argument types. You might need to add explicit type casts.
Statement: select pg_relod_conf();Date: 2025-08-09 17:32:36 Database: postgres Application: psql User: postgres Remote:
17 1 LOG: database system was shut down at ...
Times Reported Most Frequent Error / Event #17
Day Hour Count Aug 03 14 1 18 1 ERROR: syntax error at end of input
Times Reported Most Frequent Error / Event #18
Day Hour Count Aug 06 12 1 - ERROR: syntax error at end of input at character 60
Statement: select count(*) from reference_exp where curator_comments =
Date: 2025-08-06 12:48:11
19 1 ERROR: aggregate functions are not allowed in GROUP BY
Times Reported Most Frequent Error / Event #19
Day Hour Count Aug 05 16 1 - ERROR: aggregate functions are not allowed in GROUP BY at character 8
Statement: select count(*) curator_comments, author_summary from reference_exp where curator_comments = ' ' OR author_summary = ' ' group by 1,2
Date: 2025-08-05 16:42:25