pgBadger-
Global information
- Generated on Thu Aug 6 04:10:04 2026
- Log file: /project/archive/log/postgres/dbdev51/postgresql.log-20260805
- Parsed 181 log entries in 3s
- Log start from 2026-08-05 15:05:10 to 2026-08-05 16:42:40
-
Overview
Global Stats
- 1 Number of unique normalized queries
- 1 Number of queries
- 1m20s Total query duration
- 2026-08-05 16:42:40 First query
- 2026-08-05 16:42:40 Last query
- 1 queries/s at 2026-08-05 16:42:40 Query peak
- 1m20s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 1m20s Execute total duration
- 12 Number of events
- 4 Number of unique normalized events
- 8 Max number of times the same event was reported
- 0 Number of cancellation
- 0 Total number of automatic vacuums
- 0 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 18 Total number of sessions
- 8 sessions at 2026-08-05 16:42:40 Session peak
- 8d4h14m42s Total duration of sessions
- 10h54m9s Average duration of sessions
- 0 Average queries per session
- 4s463ms Average queries duration per session
- 10h54m4s Average idle time per session
- 18 Total number of connections
- 9 connections/s at 2026-08-05 16:40:02 Connection peak
- 1 Total number of databases
SQL Traffic
Key values
- 1 queries/s Query Peak
- 2026-08-05 16:42:40 Date
SELECT Traffic
Key values
- 0 queries/s Query Peak
- Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2026-08-05 16:42:40 Date
Queries duration
Key values
- 1m20s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 05 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 1 0ms 1m20s 1m20s 1m20s 1m20s 1m20s Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 05 15 0 0 0ms 0ms 0ms 0ms 16 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 05 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Aug 05 15 0 0 0.00 0.00% 16 0 1 1.00 0.00% Day Hour Count Average / Second Aug 05 15 0 0.00/s 16 18 0.01/s Day Hour Count Average Duration Average idle time Aug 05 15 0 0ms 0ms 16 18 10h54m9s 10h54m4s -
Connections
Established Connections
Key values
- 9 connections Connection Peak
- 2026-08-05 16:40:02 Date
Connections per database
Key values
- ctddev51 Main Database
- 18 connections Total
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Sessions
Simultaneous sessions
Key values
- 8 sessions Session Peak
- 2026-08-05 16:42:40 Date
Histogram of session times
Key values
- 8 600000-1800000ms duration
Sessions per database
Key values
- ctddev51 Main Database
- 18 sessions Total
Sessions per user
Key values
- pubeu Main User
- 18 sessions Total
Sessions per host
Key values
- 10.12.5.37 Main Host
- 18 sessions Total
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Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 0 buffers Checkpoint Peak
- Date
- seconds Highest write time
- seconds Sync time
Checkpoint write buffers (5 minutes period)
NO DATASET
Checkpoints Wal files
Key values
- 0 files Wal files usage Peak
- Date
Checkpoint Wal files usage (5 minutes period)
NO DATASET
Checkpoints distance
Key values
- 0 Mo Distance Peak
- Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Aug 05 15 0 0s 0s 0s 16 0 0s 0s 0s Day Hour Added Removed Recycled Synced files Longest sync Average sync Aug 05 15 0 0 0 0 0s 0s 16 0 0 0 0 0s 0s Day Hour Count Avg time (sec) Aug 05 15 0 0s 16 0 0s Day Hour Mean distance Mean estimate Aug 05 15 0.00 kB 0.00 kB 16 0.00 kB 0.00 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Aug 05 15 0 0 0 16 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
- 0 sec Highest CPU-cost analyze
Table
Database - Date
Autovacuum actions (5 minutes period)
NO DATASET
Average Autovacuum Duration
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
Average Autovacuum Duration (5 minutes average)
NO DATASET
Analyzes per table
Key values
- unknown (0) Main table analyzed (database )
- 0 analyzes Total
Vacuums per table
Key values
- unknown (0) Main table vacuumed on database
- 0 vacuums Total
Tuples removed per table
Key values
- unknown (0) Main table with removed tuples on database
- 0 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Aug 05 15 0 0 16 0 0 - 0 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
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Queries
Queries by type
Key values
- 0 Total read queries
- 1 Total write queries
Queries by database
Key values
- ctddev51 Main database
- 1 Requests
- 1m20s (ctddev51)
- Main time consuming database
Queries by user
Key values
- pubeu Main user
- 1 Requests
User Request type Count Duration pubeu Total 1 1m20s cte 1 1m20s Duration by user
Key values
- 1m20s (pubeu) Main time consuming user
User Request type Count Duration pubeu Total 1 1m20s cte 1 1m20s Queries by host
Key values
- unknown Main host
- 1 Requests
- 1m20s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 1 Requests
- 1m20s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2026-08-05 15:56:33 Date
Number of cancelled queries (5 minutes period)
NO DATASET
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Top Queries
Histogram of query times
Key values
- 1 > 10000ms duration
Slowest individual queries
Rank Duration Query 1 1m20s WITH anatomy AS ( SELECT chem_conc_id, array_agg(anatomy_id ORDER BY anatomy_id) AS anatomy_ids, string_agg(DISTINCT anatomy_nm_html || '^' || anatomy_acc_txt || '^' || position_seq || '^' || anatomy_acc_db_id || '^' || anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy GROUP BY chem_conc_id ) SELECT /* ChemConcentrationDao */ cc.chem_id chem_id, t.nm chem, t.nm_html chemNmHtml, t.acc_txt chemAcc, t.secondary_nm casRN, cc.chem_conc || ' ' || cc.chem_conc_uom_nm as concentration, cc.ixn_qualifier_nm vivoVitro, cc.chem_conc_exp_route_nm expRoute, cc.taxon_nm_html organism, a1.anatomyTerms anatomyTerms, a1.anatomyTerms anatomyTermsSort, cc.action_type_cd directEvidence, cc.action_type_cd directEvidenceSort, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tx.nm taxonnm, tx.secondary_nm taxoncomnm, tx.id taxonid, tx.acc_txt taxonacc, string_agg(distinct cc2.acc_txt, '|') AS refAcc, COUNT(DISTINCT cc2.reference_id) as referenceCount, COUNT(*) OVER () fullRowCount FROM chem_conc cc INNER JOIN term t ON cc.chem_id = t.id INNER JOIN term tx ON cc.taxon_id = tx.id LEFT JOIN term d ON cc.disease_id = d.id INNER JOIN ( SELECT cc2.*, refer.acc_txt FROM chem_conc cc2 LEFT OUTER JOIN REFERENCE refer ON cc2.reference_id = refer.id) cc2 ON cc2.chem_id IS NOT DISTINCT FROM cc.chem_id AND cc2.chem_conc IS NOT DISTINCT FROM cc.chem_conc AND cc2.chem_conc_uom_nm IS NOT DISTINCT FROM cc.chem_conc_uom_nm AND cc2.taxon_id IS NOT DISTINCT FROM cc.taxon_id AND cc2.disease_id IS NOT DISTINCT FROM cc.disease_id AND cc2.chem_conc_exp_route_nm IS NOT DISTINCT FROM cc.chem_conc_exp_route_nm AND cc2.ixn_qualifier_nm IS NOT DISTINCT FROM cc.ixn_qualifier_nm AND cc2.action_type_cd IS NOT DISTINCT FROM cc.action_type_cd JOIN anatomy a1 ON a1.chem_conc_id = cc.id JOIN anatomy a2 ON a2.chem_conc_id = cc2.id AND a1.anatomy_ids = a2.anatomy_ids LEFT JOIN ( SELECT cca.chem_conc_id, string_agg(distinct cca.anatomy_nm_html || '^' || cca.anatomy_acc_txt || '^' || cca.position_seq || '^' || cca.anatomy_acc_db_id || '^' || cca.anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy cca GROUP BY cca.chem_conc_id) cca ON cc.id = cca.chem_conc_id WHERE t.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1429606') GROUP BY cc.chem_id, chem, chemNmHtml, chemAcc, casRN, concentration, vivoVitro, expRoute, organism, a1.anatomyTerms, anatomyTermsSort, directEvidence, directEvidenceSort, diseasenm, diseaseacc, diseaseaccdbcd, diseaseid, taxonnm, taxoncomnm, taxonid, taxonacc ORDER BY organism LIMIT 50;[ Date: 2026-08-05 16:42:40 - Database: ctddev51 - User: pubeu - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 1m20s 1 1m20s 1m20s 1m20s with anatomy as ( select chem_conc_id, array_agg(anatomy_id order by anatomy_id) as anatomy_ids, string_agg(distinct anatomy_nm_html || ? || anatomy_acc_txt || ? || position_seq || ? || anatomy_acc_db_id || ? || anatomy_nm, ?) as anatomyterms from chem_conc_anatomy group by chem_conc_id ) select cc.chem_id chem_id, t.nm chem, t.nm_html chemnmhtml, t.acc_txt chemacc, t.secondary_nm casrn, cc.chem_conc || ? || cc.chem_conc_uom_nm as concentration, cc.ixn_qualifier_nm vivovitro, cc.chem_conc_exp_route_nm exproute, cc.taxon_nm_html organism, a1.anatomyterms anatomyterms, a1.anatomyterms anatomytermssort, cc.action_type_cd directevidence, cc.action_type_cd directevidencesort, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tx.nm taxonnm, tx.secondary_nm taxoncomnm, tx.id taxonid, tx.acc_txt taxonacc, string_agg(distinct cc2.acc_txt, ?) as refacc, count(distinct cc2.reference_id) as referencecount, count(*) over () fullrowcount from chem_conc cc inner join term t on cc.chem_id = t.id inner join term tx on cc.taxon_id = tx.id left join term d on cc.disease_id = d.id inner join ( select cc2.*, refer.acc_txt from chem_conc cc2 left outer join reference refer on cc2.reference_id = refer.id) cc2 on cc2.chem_id is not distinct from cc.chem_id and cc2.chem_conc is not distinct from cc.chem_conc and cc2.chem_conc_uom_nm is not distinct from cc.chem_conc_uom_nm and cc2.taxon_id is not distinct from cc.taxon_id and cc2.disease_id is not distinct from cc.disease_id and cc2.chem_conc_exp_route_nm is not distinct from cc.chem_conc_exp_route_nm and cc2.ixn_qualifier_nm is not distinct from cc.ixn_qualifier_nm and cc2.action_type_cd is not distinct from cc.action_type_cd join anatomy a1 on a1.chem_conc_id = cc.id join anatomy a2 on a2.chem_conc_id = cc2.id and a1.anatomy_ids = a2.anatomy_ids left join ( select cca.chem_conc_id, string_agg(distinct cca.anatomy_nm_html || ? || cca.anatomy_acc_txt || ? || cca.position_seq || ? || cca.anatomy_acc_db_id || ? || cca.anatomy_nm, ?) as anatomyterms from chem_conc_anatomy cca group by cca.chem_conc_id) cca on cc.id = cca.chem_conc_id where t.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) group by cc.chem_id, chem, chemnmhtml, chemacc, casrn, concentration, vivovitro, exproute, organism, a1.anatomyterms, anatomytermssort, directevidence, directevidencesort, diseasenm, diseaseacc, diseaseaccdbcd, diseaseid, taxonnm, taxoncomnm, taxonid, taxonacc order by organism limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 05 16 1 1m20s 1m20s [ User: pubeu - Total duration: 1m20s - Times executed: 1 ]
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WITH anatomy AS ( SELECT chem_conc_id, array_agg(anatomy_id ORDER BY anatomy_id) AS anatomy_ids, string_agg(DISTINCT anatomy_nm_html || '^' || anatomy_acc_txt || '^' || position_seq || '^' || anatomy_acc_db_id || '^' || anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy GROUP BY chem_conc_id ) SELECT /* ChemConcentrationDao */ cc.chem_id chem_id, t.nm chem, t.nm_html chemNmHtml, t.acc_txt chemAcc, t.secondary_nm casRN, cc.chem_conc || ' ' || cc.chem_conc_uom_nm as concentration, cc.ixn_qualifier_nm vivoVitro, cc.chem_conc_exp_route_nm expRoute, cc.taxon_nm_html organism, a1.anatomyTerms anatomyTerms, a1.anatomyTerms anatomyTermsSort, cc.action_type_cd directEvidence, cc.action_type_cd directEvidenceSort, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tx.nm taxonnm, tx.secondary_nm taxoncomnm, tx.id taxonid, tx.acc_txt taxonacc, string_agg(distinct cc2.acc_txt, '|') AS refAcc, COUNT(DISTINCT cc2.reference_id) as referenceCount, COUNT(*) OVER () fullRowCount FROM chem_conc cc INNER JOIN term t ON cc.chem_id = t.id INNER JOIN term tx ON cc.taxon_id = tx.id LEFT JOIN term d ON cc.disease_id = d.id INNER JOIN ( SELECT cc2.*, refer.acc_txt FROM chem_conc cc2 LEFT OUTER JOIN REFERENCE refer ON cc2.reference_id = refer.id) cc2 ON cc2.chem_id IS NOT DISTINCT FROM cc.chem_id AND cc2.chem_conc IS NOT DISTINCT FROM cc.chem_conc AND cc2.chem_conc_uom_nm IS NOT DISTINCT FROM cc.chem_conc_uom_nm AND cc2.taxon_id IS NOT DISTINCT FROM cc.taxon_id AND cc2.disease_id IS NOT DISTINCT FROM cc.disease_id AND cc2.chem_conc_exp_route_nm IS NOT DISTINCT FROM cc.chem_conc_exp_route_nm AND cc2.ixn_qualifier_nm IS NOT DISTINCT FROM cc.ixn_qualifier_nm AND cc2.action_type_cd IS NOT DISTINCT FROM cc.action_type_cd JOIN anatomy a1 ON a1.chem_conc_id = cc.id JOIN anatomy a2 ON a2.chem_conc_id = cc2.id AND a1.anatomy_ids = a2.anatomy_ids LEFT JOIN ( SELECT cca.chem_conc_id, string_agg(distinct cca.anatomy_nm_html || '^' || cca.anatomy_acc_txt || '^' || cca.position_seq || '^' || cca.anatomy_acc_db_id || '^' || cca.anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy cca GROUP BY cca.chem_conc_id) cca ON cc.id = cca.chem_conc_id WHERE t.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1429606') GROUP BY cc.chem_id, chem, chemNmHtml, chemAcc, casRN, concentration, vivoVitro, expRoute, organism, a1.anatomyTerms, anatomyTermsSort, directEvidence, directEvidenceSort, diseasenm, diseaseacc, diseaseaccdbcd, diseaseid, taxonnm, taxoncomnm, taxonid, taxonacc ORDER BY organism LIMIT 50;
Date: 2026-08-05 16:42:40 Duration: 1m20s Database: ctddev51 User: pubeu Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 1 1m20s 1m20s 1m20s 1m20s with anatomy as ( select chem_conc_id, array_agg(anatomy_id order by anatomy_id) as anatomy_ids, string_agg(distinct anatomy_nm_html || ? || anatomy_acc_txt || ? || position_seq || ? || anatomy_acc_db_id || ? || anatomy_nm, ?) as anatomyterms from chem_conc_anatomy group by chem_conc_id ) select cc.chem_id chem_id, t.nm chem, t.nm_html chemnmhtml, t.acc_txt chemacc, t.secondary_nm casrn, cc.chem_conc || ? || cc.chem_conc_uom_nm as concentration, cc.ixn_qualifier_nm vivovitro, cc.chem_conc_exp_route_nm exproute, cc.taxon_nm_html organism, a1.anatomyterms anatomyterms, a1.anatomyterms anatomytermssort, cc.action_type_cd directevidence, cc.action_type_cd directevidencesort, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tx.nm taxonnm, tx.secondary_nm taxoncomnm, tx.id taxonid, tx.acc_txt taxonacc, string_agg(distinct cc2.acc_txt, ?) as refacc, count(distinct cc2.reference_id) as referencecount, count(*) over () fullrowcount from chem_conc cc inner join term t on cc.chem_id = t.id inner join term tx on cc.taxon_id = tx.id left join term d on cc.disease_id = d.id inner join ( select cc2.*, refer.acc_txt from chem_conc cc2 left outer join reference refer on cc2.reference_id = refer.id) cc2 on cc2.chem_id is not distinct from cc.chem_id and cc2.chem_conc is not distinct from cc.chem_conc and cc2.chem_conc_uom_nm is not distinct from cc.chem_conc_uom_nm and cc2.taxon_id is not distinct from cc.taxon_id and cc2.disease_id is not distinct from cc.disease_id and cc2.chem_conc_exp_route_nm is not distinct from cc.chem_conc_exp_route_nm and cc2.ixn_qualifier_nm is not distinct from cc.ixn_qualifier_nm and cc2.action_type_cd is not distinct from cc.action_type_cd join anatomy a1 on a1.chem_conc_id = cc.id join anatomy a2 on a2.chem_conc_id = cc2.id and a1.anatomy_ids = a2.anatomy_ids left join ( select cca.chem_conc_id, string_agg(distinct cca.anatomy_nm_html || ? || cca.anatomy_acc_txt || ? || cca.position_seq || ? || cca.anatomy_acc_db_id || ? || cca.anatomy_nm, ?) as anatomyterms from chem_conc_anatomy cca group by cca.chem_conc_id) cca on cc.id = cca.chem_conc_id where t.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) group by cc.chem_id, chem, chemnmhtml, chemacc, casrn, concentration, vivovitro, exproute, organism, a1.anatomyterms, anatomytermssort, directevidence, directevidencesort, diseasenm, diseaseacc, diseaseaccdbcd, diseaseid, taxonnm, taxoncomnm, taxonid, taxonacc order by organism limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 05 16 1 1m20s 1m20s [ User: pubeu - Total duration: 1m20s - Times executed: 1 ]
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WITH anatomy AS ( SELECT chem_conc_id, array_agg(anatomy_id ORDER BY anatomy_id) AS anatomy_ids, string_agg(DISTINCT anatomy_nm_html || '^' || anatomy_acc_txt || '^' || position_seq || '^' || anatomy_acc_db_id || '^' || anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy GROUP BY chem_conc_id ) SELECT /* ChemConcentrationDao */ cc.chem_id chem_id, t.nm chem, t.nm_html chemNmHtml, t.acc_txt chemAcc, t.secondary_nm casRN, cc.chem_conc || ' ' || cc.chem_conc_uom_nm as concentration, cc.ixn_qualifier_nm vivoVitro, cc.chem_conc_exp_route_nm expRoute, cc.taxon_nm_html organism, a1.anatomyTerms anatomyTerms, a1.anatomyTerms anatomyTermsSort, cc.action_type_cd directEvidence, cc.action_type_cd directEvidenceSort, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tx.nm taxonnm, tx.secondary_nm taxoncomnm, tx.id taxonid, tx.acc_txt taxonacc, string_agg(distinct cc2.acc_txt, '|') AS refAcc, COUNT(DISTINCT cc2.reference_id) as referenceCount, COUNT(*) OVER () fullRowCount FROM chem_conc cc INNER JOIN term t ON cc.chem_id = t.id INNER JOIN term tx ON cc.taxon_id = tx.id LEFT JOIN term d ON cc.disease_id = d.id INNER JOIN ( SELECT cc2.*, refer.acc_txt FROM chem_conc cc2 LEFT OUTER JOIN REFERENCE refer ON cc2.reference_id = refer.id) cc2 ON cc2.chem_id IS NOT DISTINCT FROM cc.chem_id AND cc2.chem_conc IS NOT DISTINCT FROM cc.chem_conc AND cc2.chem_conc_uom_nm IS NOT DISTINCT FROM cc.chem_conc_uom_nm AND cc2.taxon_id IS NOT DISTINCT FROM cc.taxon_id AND cc2.disease_id IS NOT DISTINCT FROM cc.disease_id AND cc2.chem_conc_exp_route_nm IS NOT DISTINCT FROM cc.chem_conc_exp_route_nm AND cc2.ixn_qualifier_nm IS NOT DISTINCT FROM cc.ixn_qualifier_nm AND cc2.action_type_cd IS NOT DISTINCT FROM cc.action_type_cd JOIN anatomy a1 ON a1.chem_conc_id = cc.id JOIN anatomy a2 ON a2.chem_conc_id = cc2.id AND a1.anatomy_ids = a2.anatomy_ids LEFT JOIN ( SELECT cca.chem_conc_id, string_agg(distinct cca.anatomy_nm_html || '^' || cca.anatomy_acc_txt || '^' || cca.position_seq || '^' || cca.anatomy_acc_db_id || '^' || cca.anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy cca GROUP BY cca.chem_conc_id) cca ON cc.id = cca.chem_conc_id WHERE t.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1429606') GROUP BY cc.chem_id, chem, chemNmHtml, chemAcc, casRN, concentration, vivoVitro, expRoute, organism, a1.anatomyTerms, anatomyTermsSort, directEvidence, directEvidenceSort, diseasenm, diseaseacc, diseaseaccdbcd, diseaseid, taxonnm, taxoncomnm, taxonid, taxonacc ORDER BY organism LIMIT 50;
Date: 2026-08-05 16:42:40 Duration: 1m20s Database: ctddev51 User: pubeu Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 1m20s 1m20s 1m20s 1 1m20s with anatomy as ( select chem_conc_id, array_agg(anatomy_id order by anatomy_id) as anatomy_ids, string_agg(distinct anatomy_nm_html || ? || anatomy_acc_txt || ? || position_seq || ? || anatomy_acc_db_id || ? || anatomy_nm, ?) as anatomyterms from chem_conc_anatomy group by chem_conc_id ) select cc.chem_id chem_id, t.nm chem, t.nm_html chemnmhtml, t.acc_txt chemacc, t.secondary_nm casrn, cc.chem_conc || ? || cc.chem_conc_uom_nm as concentration, cc.ixn_qualifier_nm vivovitro, cc.chem_conc_exp_route_nm exproute, cc.taxon_nm_html organism, a1.anatomyterms anatomyterms, a1.anatomyterms anatomytermssort, cc.action_type_cd directevidence, cc.action_type_cd directevidencesort, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tx.nm taxonnm, tx.secondary_nm taxoncomnm, tx.id taxonid, tx.acc_txt taxonacc, string_agg(distinct cc2.acc_txt, ?) as refacc, count(distinct cc2.reference_id) as referencecount, count(*) over () fullrowcount from chem_conc cc inner join term t on cc.chem_id = t.id inner join term tx on cc.taxon_id = tx.id left join term d on cc.disease_id = d.id inner join ( select cc2.*, refer.acc_txt from chem_conc cc2 left outer join reference refer on cc2.reference_id = refer.id) cc2 on cc2.chem_id is not distinct from cc.chem_id and cc2.chem_conc is not distinct from cc.chem_conc and cc2.chem_conc_uom_nm is not distinct from cc.chem_conc_uom_nm and cc2.taxon_id is not distinct from cc.taxon_id and cc2.disease_id is not distinct from cc.disease_id and cc2.chem_conc_exp_route_nm is not distinct from cc.chem_conc_exp_route_nm and cc2.ixn_qualifier_nm is not distinct from cc.ixn_qualifier_nm and cc2.action_type_cd is not distinct from cc.action_type_cd join anatomy a1 on a1.chem_conc_id = cc.id join anatomy a2 on a2.chem_conc_id = cc2.id and a1.anatomy_ids = a2.anatomy_ids left join ( select cca.chem_conc_id, string_agg(distinct cca.anatomy_nm_html || ? || cca.anatomy_acc_txt || ? || cca.position_seq || ? || cca.anatomy_acc_db_id || ? || cca.anatomy_nm, ?) as anatomyterms from chem_conc_anatomy cca group by cca.chem_conc_id) cca on cc.id = cca.chem_conc_id where t.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) group by cc.chem_id, chem, chemnmhtml, chemacc, casrn, concentration, vivovitro, exproute, organism, a1.anatomyterms, anatomytermssort, directevidence, directevidencesort, diseasenm, diseaseacc, diseaseaccdbcd, diseaseid, taxonnm, taxoncomnm, taxonid, taxonacc order by organism limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 05 16 1 1m20s 1m20s [ User: pubeu - Total duration: 1m20s - Times executed: 1 ]
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WITH anatomy AS ( SELECT chem_conc_id, array_agg(anatomy_id ORDER BY anatomy_id) AS anatomy_ids, string_agg(DISTINCT anatomy_nm_html || '^' || anatomy_acc_txt || '^' || position_seq || '^' || anatomy_acc_db_id || '^' || anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy GROUP BY chem_conc_id ) SELECT /* ChemConcentrationDao */ cc.chem_id chem_id, t.nm chem, t.nm_html chemNmHtml, t.acc_txt chemAcc, t.secondary_nm casRN, cc.chem_conc || ' ' || cc.chem_conc_uom_nm as concentration, cc.ixn_qualifier_nm vivoVitro, cc.chem_conc_exp_route_nm expRoute, cc.taxon_nm_html organism, a1.anatomyTerms anatomyTerms, a1.anatomyTerms anatomyTermsSort, cc.action_type_cd directEvidence, cc.action_type_cd directEvidenceSort, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, tx.nm taxonnm, tx.secondary_nm taxoncomnm, tx.id taxonid, tx.acc_txt taxonacc, string_agg(distinct cc2.acc_txt, '|') AS refAcc, COUNT(DISTINCT cc2.reference_id) as referenceCount, COUNT(*) OVER () fullRowCount FROM chem_conc cc INNER JOIN term t ON cc.chem_id = t.id INNER JOIN term tx ON cc.taxon_id = tx.id LEFT JOIN term d ON cc.disease_id = d.id INNER JOIN ( SELECT cc2.*, refer.acc_txt FROM chem_conc cc2 LEFT OUTER JOIN REFERENCE refer ON cc2.reference_id = refer.id) cc2 ON cc2.chem_id IS NOT DISTINCT FROM cc.chem_id AND cc2.chem_conc IS NOT DISTINCT FROM cc.chem_conc AND cc2.chem_conc_uom_nm IS NOT DISTINCT FROM cc.chem_conc_uom_nm AND cc2.taxon_id IS NOT DISTINCT FROM cc.taxon_id AND cc2.disease_id IS NOT DISTINCT FROM cc.disease_id AND cc2.chem_conc_exp_route_nm IS NOT DISTINCT FROM cc.chem_conc_exp_route_nm AND cc2.ixn_qualifier_nm IS NOT DISTINCT FROM cc.ixn_qualifier_nm AND cc2.action_type_cd IS NOT DISTINCT FROM cc.action_type_cd JOIN anatomy a1 ON a1.chem_conc_id = cc.id JOIN anatomy a2 ON a2.chem_conc_id = cc2.id AND a1.anatomy_ids = a2.anatomy_ids LEFT JOIN ( SELECT cca.chem_conc_id, string_agg(distinct cca.anatomy_nm_html || '^' || cca.anatomy_acc_txt || '^' || cca.position_seq || '^' || cca.anatomy_acc_db_id || '^' || cca.anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy cca GROUP BY cca.chem_conc_id) cca ON cc.id = cca.chem_conc_id WHERE t.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1429606') GROUP BY cc.chem_id, chem, chemNmHtml, chemAcc, casRN, concentration, vivoVitro, expRoute, organism, a1.anatomyTerms, anatomyTermsSort, directEvidence, directEvidenceSort, diseasenm, diseaseacc, diseaseaccdbcd, diseaseid, taxonnm, taxoncomnm, taxonid, taxonacc ORDER BY organism LIMIT 50;
Date: 2026-08-05 16:42:40 Duration: 1m20s Database: ctddev51 User: pubeu Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
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Events
Log levels
Key values
- 91 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 0 FATAL entries
- 4 ERROR entries
- 0 WARNING entries
- 8 EVENTLOG entries
Most Frequent Errors/Events
Key values
- 8 Max number of times the same event was reported
- 12 Total events found
Rank Times reported Error 1 8 LOG: could not receive data from client: Connection reset by peer
Times Reported Most Frequent Error / Event #1
Day Hour Count Aug 05 16 8 2 2 ERROR: column "..." must appear in the GROUP BY clause or be used in an aggregate function
Times Reported Most Frequent Error / Event #2
Day Hour Count Aug 05 15 2 - ERROR: column "cc.chem_acc_txt" must appear in the GROUP BY clause or be used in an aggregate function at character 48
- ERROR: column "at.nm" must appear in the GROUP BY clause or be used in an aggregate function at character 748
Statement: select distinct chem_nm as ChemicalName ,chem_acc_txt as ChemicalID ,concat(chem_conc || ' ', chem_conc_uom_nm) as Concentration ,ixn_qualifier_nm as VivoVitro ,chem_conc_exp_route_nm as ExposureRouteName ,taxon_nm as Organism -- , (SELECT STRING_AGG( distinct cca.position_seq + 1 || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt, '|' ORDER BY cca.position_seq + 1 || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt ) ) as anatomyTerms , (SELECT STRING_AGG( cca.anatomy_nm || '^' || cca.anatomy_acc_txt, '|' ORDER BY cca.position_seq || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt ) ) as anatomyTerms ,action_type_cd as DirectEvidence ,disease_nm as DiseaseName ,disease_acc_txt as DiseaseID , reference_acc_txt as Reference -- from chem_conc cc left outer join chem_conc_anatomy cca on cc.id = cca.chem_conc_id --where chem_nm = 'tanshinone' --where chem_nm = '2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one' group by cc.chem_nm ,cc.chem_conc ,cc.chem_conc_uom_nm ,cc.ixn_qualifier_nm ,cc.chem_conc_exp_route_nm ,cc.taxon_nm ,cc.action_type_cd ,cc.disease_nm ,reference_acc_txt -- order by cc.chem_nm,cc.taxon_nm
Date: 2026-08-05 15:05:10
Statement: select chem_nm as ChemicalName ,chem_acc_txt as ChemicalID ,chemTerm.secondary_nm as CasRN ,concat(chem_conc || ' ', chem_conc_uom_nm) as Concentration ,ixn_qualifier_nm as VivoVitro ,chem_conc_exp_route_nm as ExposureRouteName ,taxon_nm as Organism ,taxon_acc_txt as OrganismID -- , (SELECT STRING_AGG( distinct cca.position_seq + 1 || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt, '|' ORDER BY cca.position_seq + 1 || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt ) ) as anatomyTerms , (SELECT STRING_AGG( cca.anatomy_nm || '^' || cca.anatomy_acc_txt, '|' ORDER BY cca.position_seq || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt ) ) as anatomyTerms -- ,action_type_cd as DirectEvidence ,at.nm as DirectEvidence ,disease_nm as DiseaseName ,disease_acc_txt as DiseaseID , reference_acc_txt as Reference -- from chem_conc cc left outer join chem_conc_anatomy cca on cc.id = cca.chem_conc_id left outer join action_type at on cc.action_type_cd = at.cd and at.ixn_type_nm='CHEMICAL-DISEASE' INNER JOIN term chemTerm ON cc.chem_id = chemTerm.id --where chem_nm = 'tanshinone' where chem_nm = '2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one' group by cc.chem_nm ,cc.chem_acc_txt ,chemTerm.secondary_nm ,cc.chem_conc ,cc.chem_conc_uom_nm ,cc.ixn_qualifier_nm ,cc.chem_conc_exp_route_nm ,cc.taxon_nm ,cc.taxon_acc_txt ,cc.action_type_cd ,cc.disease_nm ,cc.disease_acc_txt ,reference_acc_txt -- order by cc.chem_nm,cc.taxon_nm
Date: 2026-08-05 15:56:33
3 1 ERROR: column "..." does not exist
Times Reported Most Frequent Error / Event #3
Day Hour Count Aug 05 15 1 - ERROR: column cc.disease_name does not exist at character 1149
Hint: Perhaps you meant to reference the column "cc.disease_nm".
Statement: select distinct chem_nm as ChemicalName ,chem_acc_txt as ChemicalID ,concat(chem_conc || ' ', chem_conc_uom_nm) as Concentration ,ixn_qualifier_nm as VivoVitro ,chem_conc_exp_route_nm as ExposureRouteName ,taxon_nm as Organism -- , (SELECT STRING_AGG( distinct cca.position_seq + 1 || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt, '|' ORDER BY cca.position_seq + 1 || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt ) ) as anatomyTerms , (SELECT STRING_AGG( cca.anatomy_nm || '^' || cca.anatomy_acc_txt, '|' ORDER BY cca.position_seq || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt ) ) as anatomyTerms ,action_type_cd as DirectEvidence ,disease_nm as DiseaseName ,disease_acc_txt as DiseaseID , reference_acc_txt as Reference -- from chem_conc cc left outer join chem_conc_anatomy cca on cc.id = cca.chem_conc_id --where chem_nm = 'tanshinone' --where chem_nm = '2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one' group by cc.chem_nm ,cc.chem_acc_txt ,cc.chem_conc ,cc.chem_conc_uom_nm ,cc.ixn_qualifier_nm ,cc.chem_conc_exp_route_nm ,cc.taxon_nm ,cc.action_type_cd ,cc.disease_name ,cc.disease_acc_txt ,reference_acc_txt -- order by cc.chem_nm,cc.taxon_nmDate: 2026-08-05 15:06:06
4 1 ERROR: cross-database references are not implemented: cc.disease_name.cc.disease_acc_txt
Times Reported Most Frequent Error / Event #4
Day Hour Count Aug 05 15 1 - ERROR: cross-database references are not implemented: cc.disease_name.cc.disease_acc_txt at character 1149
Statement: select distinct chem_nm as ChemicalName ,chem_acc_txt as ChemicalID ,concat(chem_conc || ' ', chem_conc_uom_nm) as Concentration ,ixn_qualifier_nm as VivoVitro ,chem_conc_exp_route_nm as ExposureRouteName ,taxon_nm as Organism -- , (SELECT STRING_AGG( distinct cca.position_seq + 1 || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt, '|' ORDER BY cca.position_seq + 1 || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt ) ) as anatomyTerms , (SELECT STRING_AGG( cca.anatomy_nm || '^' || cca.anatomy_acc_txt, '|' ORDER BY cca.position_seq || '^' || cca.anatomy_nm || '^' || cca.anatomy_acc_txt ) ) as anatomyTerms ,action_type_cd as DirectEvidence ,disease_nm as DiseaseName ,disease_acc_txt as DiseaseID , reference_acc_txt as Reference -- from chem_conc cc left outer join chem_conc_anatomy cca on cc.id = cca.chem_conc_id --where chem_nm = 'tanshinone' --where chem_nm = '2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one' group by cc.chem_nm ,cc.chem_acc_txt ,cc.chem_conc ,cc.chem_conc_uom_nm ,cc.ixn_qualifier_nm ,cc.chem_conc_exp_route_nm ,cc.taxon_nm ,cc.action_type_cd ,cc.disease_name .cc.disease_acc_txt ,reference_acc_txt -- order by cc.chem_nm,cc.taxon_nm
Date: 2026-08-05 15:05:54