1
179
Details
3m32s
1s113ms
1s317ms
1s189ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
exposuremarkerterm.id = ?
or receptorterm.id = ?
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort
limit ?;
Times Reported Time consuming queries #1
Day
Hour
Count
Duration
Avg duration
Jun 29 00 10 11s903ms 1s190ms 01 10 11s915ms 1s191ms 02 8 9s335ms 1s166ms 03 16 19s117ms 1s194ms 04 11 13s39ms 1s185ms 05 11 13s278ms 1s207ms 06 8 9s580ms 1s197ms 07 10 12s9ms 1s200ms 08 8 9s485ms 1s185ms 09 8 9s478ms 1s184ms 10 6 7s94ms 1s182ms 11 6 7s127ms 1s187ms 12 3 3s638ms 1s212ms 13 5 5s975ms 1s195ms 14 5 6s18ms 1s203ms 15 3 3s550ms 1s183ms 16 11 13s113ms 1s192ms 17 10 11s895ms 1s189ms 18 2 2s351ms 1s175ms 19 3 3s430ms 1s143ms 20 6 7s3ms 1s167ms 21 9 10s553ms 1s172ms 22 4 4s817ms 1s204ms 23 6 7s173ms 1s195ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 1m44s - Times executed: 88 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '1433030'
or receptorTerm.id = '1433030'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-06-29 05:43:41
Duration: 1s317ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '1433030'
or receptorTerm.id = '1433030'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-06-29 05:38:40
Duration: 1s296ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '1617894'
or receptorTerm.id = '1617894'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-06-29 12:20:08
Duration: 1s246ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
2
94
Details
2m
1s195ms
1s414ms
1s286ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
or receptorterm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort
limit ?;
Times Reported Time consuming queries #2
Day
Hour
Count
Duration
Avg duration
Jun 29 00 1 1s311ms 1s311ms 01 3 3s836ms 1s278ms 02 8 10s326ms 1s290ms 03 8 10s274ms 1s284ms 04 3 3s928ms 1s309ms 05 8 10s285ms 1s285ms 06 4 5s140ms 1s285ms 07 3 3s781ms 1s260ms 08 2 2s565ms 1s282ms 09 3 3s921ms 1s307ms 10 2 2s549ms 1s274ms 11 4 5s152ms 1s288ms 12 1 1s263ms 1s263ms 13 5 6s565ms 1s313ms 14 1 1s327ms 1s327ms 15 3 3s925ms 1s308ms 16 3 3s865ms 1s288ms 17 4 5s188ms 1s297ms 18 4 5s1ms 1s250ms 19 4 5s29ms 1s257ms 20 3 3s731ms 1s243ms 21 3 3s866ms 1s288ms 22 6 7s624ms 1s270ms 23 8 10s447ms 1s305ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 59s396ms - Times executed: 46 ]
[ User: qaeu - Total duration: 1s414ms - Times executed: 1 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1211542')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1211542')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-06-29 05:43:39
Duration: 1s414ms
Database: ctdprd51
User: qaeu
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1211542')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1211542')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-06-29 05:38:39
Duration: 1s386ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1243847')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1243847')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-06-29 15:56:12
Duration: 1s365ms
Bind query: yes
x Hide
3
38
Details
2m32s
3s888ms
4s211ms
4s2ms
select
coalesce ( st.alt_nm, t.nm) slimtermnm,
(
select
count ( * )
from
slim_term_mapping stm
inner join chem_disease cd on cd.disease_id = stm.mapped_term_id
where
cd.chem_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
and stm.slim_term_id = st.slim_term_id
and cd.curated_reference_qty > ?) curatedcount,
(
select
count ( * )
from
slim_term_mapping stm
inner join chem_disease cd on cd.disease_id = stm.mapped_term_id
where
cd.chem_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
and stm.slim_term_id = st.slim_term_id
and cd.indirect_gene_qty > ?) inferredcount
from
slim_term st
inner join term t on st.slim_term_id = t.id
where
st.slim_id = ?
order by
?;
Times Reported Time consuming queries #3
Day
Hour
Count
Duration
Avg duration
Jun 29 00 1 3s925ms 3s925ms 04 2 8s71ms 4s35ms 05 15 1m 4s18ms 06 9 35s852ms 3s983ms 07 3 11s931ms 3s977ms 10 1 3s888ms 3s888ms 11 1 3s958ms 3s958ms 12 2 8s191ms 4s95ms 15 2 8s165ms 4s82ms 16 1 3s903ms 3s903ms 23 1 3s941ms 3s941ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 1m11s - Times executed: 18 ]
x Hide
SELECT
/* ChemDiseasesBySlimDAO */
COALESCE ( st.alt_nm, t.nm) slimTermNm,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1397490')
AND stm.slim_term_id = st.slim_term_id
AND cd.curated_reference_qty > 0 ) curatedCount,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1397490')
AND stm.slim_term_id = st.slim_term_id
AND cd.indirect_gene_qty > 0 ) inferredCount
FROM
slim_term st
INNER JOIN term t ON st.slim_term_id = t.id
WHERE
st.slim_id = 1
ORDER BY
1 ;
Date: 2024-06-29 05:42:32
Duration: 4s211ms
Bind query: yes
SELECT
/* ChemDiseasesBySlimDAO */
COALESCE ( st.alt_nm, t.nm) slimTermNm,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1431626')
AND stm.slim_term_id = st.slim_term_id
AND cd.curated_reference_qty > 0 ) curatedCount,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1431626')
AND stm.slim_term_id = st.slim_term_id
AND cd.indirect_gene_qty > 0 ) inferredCount
FROM
slim_term st
INNER JOIN term t ON st.slim_term_id = t.id
WHERE
st.slim_id = 1
ORDER BY
1 ;
Date: 2024-06-29 15:36:15
Duration: 4s204ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ChemDiseasesBySlimDAO */
COALESCE ( st.alt_nm, t.nm) slimTermNm,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1336911')
AND stm.slim_term_id = st.slim_term_id
AND cd.curated_reference_qty > 0 ) curatedCount,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1336911')
AND stm.slim_term_id = st.slim_term_id
AND cd.indirect_gene_qty > 0 ) inferredCount
FROM
slim_term st
INNER JOIN term t ON st.slim_term_id = t.id
WHERE
st.slim_id = 1
ORDER BY
1 ;
Date: 2024-06-29 12:06:17
Duration: 4s190ms
Bind query: yes
x Hide
4
31
Details
2m11s
1s2ms
6s607ms
4s227ms
select
d.abbr dagabbr,
d.nm dagnm,
gt.level_min_no daglevelmin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pvalcorrected,
te.raw_p_val pvalraw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
count ( * ) over ( ) fullrowcount
from
term_enrichment te
inner join dag_node gt on te.enriched_term_id = gt.object_id
inner join dag d on gt.dag_id = d.id
where
te.term_id = ?
and te.enriched_object_type_id = ?
order by
te.corrected_p_val,
d.abbr,
gt.nm_sort
limit ?;
Times Reported Time consuming queries #4
Day
Hour
Count
Duration
Avg duration
Jun 29 01 1 1s36ms 1s36ms 03 1 1s39ms 1s39ms 04 5 27s349ms 5s469ms 05 8 41s740ms 5s217ms 06 1 1s26ms 1s26ms 07 2 6s395ms 3s197ms 09 1 1s84ms 1s84ms 10 1 5s346ms 5s346ms 11 1 5s404ms 5s404ms 12 3 16s45ms 5s348ms 15 2 10s737ms 5s368ms 17 1 5s298ms 5s298ms 19 3 7s534ms 2s511ms 23 1 1s2ms 1s2ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 55s188ms - Times executed: 15 ]
x Hide
SELECT
/* ChemGODAO */
d.abbr dagAbbr,
d.nm dagNm,
gt.level_min_no dagLevelMin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pValCorrected,
te.raw_p_val pValRaw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment te
INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
te.term_id = '1397490'
AND te.enriched_object_type_id = 5
ORDER BY
te.corrected_p_val,
d.abbr,
gt.nm_sort
LIMIT 50 ;
Date: 2024-06-29 05:42:43
Duration: 6s607ms
Bind query: yes
SELECT
/* ChemGODAO */
d.abbr dagAbbr,
d.nm dagNm,
gt.level_min_no dagLevelMin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pValCorrected,
te.raw_p_val pValRaw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment te
INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
te.term_id = '1397490'
AND te.enriched_object_type_id = 5
ORDER BY
te.corrected_p_val,
d.abbr,
gt.nm_sort
LIMIT 50 ;
Date: 2024-06-29 05:42:47
Duration: 6s281ms
Bind query: yes
SELECT
/* ChemGODAO */
d.abbr dagAbbr,
d.nm dagNm,
gt.level_min_no dagLevelMin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pValCorrected,
te.raw_p_val pValRaw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment te
INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
te.term_id = '1397490'
AND te.enriched_object_type_id = 5
ORDER BY
te.corrected_p_val,
d.abbr,
gt.nm_sort
LIMIT 50 ;
Date: 2024-06-29 05:42:48
Duration: 6s118ms
Bind query: yes
x Hide
5
21
Details
27s681ms
1s259ms
1s445ms
1s318ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
or receptorterm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort
limit ?;
Times Reported Time consuming queries #5
Day
Hour
Count
Duration
Avg duration
Jun 29 00 1 1s299ms 1s299ms 02 3 3s998ms 1s332ms 03 1 1s317ms 1s317ms 04 1 1s317ms 1s317ms 05 2 2s832ms 1s416ms 07 2 2s557ms 1s278ms 08 1 1s322ms 1s322ms 11 2 2s671ms 1s335ms 12 1 1s311ms 1s311ms 14 1 1s380ms 1s380ms 21 2 2s525ms 1s262ms 22 2 2s597ms 1s298ms 23 2 2s549ms 1s274ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 7s957ms - Times executed: 6 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2071900')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2071900')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-06-29 05:38:42
Duration: 1s445ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2077924')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2077924')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-06-29 02:08:07
Duration: 1s391ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2071900')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2071900')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-06-29 05:43:42
Duration: 1s386ms
Bind query: yes
x Hide
6
7
Details
26s345ms
1s274ms
6s361ms
3s763ms
select
d.nm diseasenm,
d.acc_txt diseaseacc,
d.acc_db_cd diseaseaccdbcd,
d.id diseaseid,
g.nm genesymbol,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid,
gd.network_score networkscore,
gd.indirect_chem_qty inferredcount,
gd.reference_qty referencecount,
gd.exposure_reference_qty exposurereferencecount,
case when gd.curated_reference_qty > ? then
(
select
string_agg ( a.action_type_cd || ? || a.action_type_nm, ?)
from
gene_disease_axn a
where
a.gene_id = gd.gene_id
and a.disease_id = gd.disease_id)
else
null
end actiontypes
from
gene_disease gd
inner join term g on gd.gene_id = g.id
inner join term d on gd.disease_id = d.id
where
gd.disease_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
order by
actiontypes,
gd.network_score desc nulls last ,
g.nm_sort,
d.nm_sort
limit ?;
Times Reported Time consuming queries #6
Day
Hour
Count
Duration
Avg duration
Jun 29 05 1 5s895ms 5s895ms 09 3 9s588ms 3s196ms 18 1 2s173ms 2s173ms 21 2 8s687ms 4s343ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 3s447ms - Times executed: 2 ]
x Hide
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2081617')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-06-29 21:54:09
Duration: 6s361ms
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2081617')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-06-29 09:04:31
Duration: 5s943ms
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2080922')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-06-29 05:50:20
Duration: 5s895ms
Bind query: yes
x Hide
7
7
Details
10s41ms
1s349ms
1s486ms
1s434ms
select
t.nm,
t.nm_html nmhtml,
t.secondary_nm secondarynm,
t.acc_txt acc,
? || t.nm accquerystr,
t.has_chems haschems,
t.has_diseases hasdiseases,
t.has_exposures hasexposures,
t.has_phenotypes hasphenotypes,
count ( * ) over ( ) fullrowcount
from
term t
where
t.object_type_id = ?
and regexp_replace ( upper ( substring ( t.nm, ?, ?) ) , ?, ?) = ?
order by
t.nm_sort
limit ?;
Times Reported Time consuming queries #7
Day
Hour
Count
Duration
Avg duration
Jun 29 01 1 1s470ms 1s470ms 05 3 4s293ms 1s431ms 07 1 1s452ms 1s452ms 09 2 2s825ms 1s412ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 4s288ms - Times executed: 3 ]
x Hide
SELECT
/* GeneBrowseTermsDAO */
t.nm,
t.nm_html nmHtml,
t.secondary_nm secondaryNm,
t.acc_txt acc,
'name:' || t.nm accQueryStr,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_phenotypes hasPhenotypes,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term t
WHERE
t.object_type_id = '4'
AND REGEXP_REPLACE ( UPPER ( SUBSTRING ( t.nm, 1 , 1 ) ) , '[^A-Z]', '#') = 'A'
ORDER BY
t.nm_sort
LIMIT 100 ;
Date: 2024-06-29 05:05:17
Duration: 1s486ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* GeneBrowseTermsDAO */
t.nm,
t.nm_html nmHtml,
t.secondary_nm secondaryNm,
t.acc_txt acc,
'name:' || t.nm accQueryStr,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_phenotypes hasPhenotypes,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term t
WHERE
t.object_type_id = '4'
AND REGEXP_REPLACE ( UPPER ( SUBSTRING ( t.nm, 1 , 1 ) ) , '[^A-Z]', '#') = 'A'
ORDER BY
t.nm_sort
LIMIT 100 ;
Date: 2024-06-29 09:29:35
Duration: 1s475ms
Bind query: yes
SELECT
/* GeneBrowseTermsDAO */
t.nm,
t.nm_html nmHtml,
t.secondary_nm secondaryNm,
t.acc_txt acc,
'name:' || t.nm accQueryStr,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_phenotypes hasPhenotypes,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term t
WHERE
t.object_type_id = '4'
AND REGEXP_REPLACE ( UPPER ( SUBSTRING ( t.nm, 1 , 1 ) ) , '[^A-Z]', '#') = 'A'
ORDER BY
t.nm_sort
LIMIT 100 ;
Date: 2024-06-29 01:14:36
Duration: 1s470ms
Bind query: yes
x Hide
8
7
Details
9s499ms
1s333ms
1s414ms
1s357ms
select
coalesce ( d.abbr_display, d.nm_display) nm # ?,
d.description # ?,
coalesce ( d.abbr, d.nm) anchor # ?,
get_homepage_url ( d.id) url # ?
from
db d # ?
where
d.id in ( # ?
select
l.db_id # ? from db_link l # ?
where
l.type_cd = ? # ?
and l.object_type_id = ?) # ?
order by
?;
Times Reported Time consuming queries #8
Day
Hour
Count
Duration
Avg duration
Jun 29 05 2 2s679ms 1s339ms 07 1 1s337ms 1s337ms 10 2 2s721ms 1s360ms 14 1 1s346ms 1s346ms 22 1 1s414ms 1s414ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 4s49ms - Times executed: 3 ]
x Hide
SELECT
COALESCE ( d.abbr_display, d.nm_display) nm # 015 ,
d.description # 015 ,
COALESCE ( d.abbr, d.nm) anchor # 015 ,
get_homepage_url ( d.id) url # 015
FROM
db d # 015
WHERE
d.id IN ( # 015
SELECT
l.db_id # 015 FROM db_link l # 015
WHERE
l.type_cd = 'X' # 015
AND l.object_type_id = 4 ) # 015
ORDER BY
1 ;
Date: 2024-06-29 22:48:15
Duration: 1s414ms
Bind query: yes
SELECT
COALESCE ( d.abbr_display, d.nm_display) nm # 015 ,
d.description # 015 ,
COALESCE ( d.abbr, d.nm) anchor # 015 ,
get_homepage_url ( d.id) url # 015
FROM
db d # 015
WHERE
d.id IN ( # 015
SELECT
l.db_id # 015 FROM db_link l # 015
WHERE
l.type_cd = 'X' # 015
AND l.object_type_id = 4 ) # 015
ORDER BY
1 ;
Date: 2024-06-29 10:07:26
Duration: 1s365ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
COALESCE ( d.abbr_display, d.nm_display) nm # 015 ,
d.description # 015 ,
COALESCE ( d.abbr, d.nm) anchor # 015 ,
get_homepage_url ( d.id) url # 015
FROM
db d # 015
WHERE
d.id IN ( # 015
SELECT
l.db_id # 015 FROM db_link l # 015
WHERE
l.type_cd = 'X' # 015
AND l.object_type_id = 4 ) # 015
ORDER BY
1 ;
Date: 2024-06-29 10:38:10
Duration: 1s355ms
Bind query: yes
x Hide
9
5
Details
10s713ms
1s23ms
3s345ms
2s142ms
with recursive sub_node (
object_id,
id,
path,
lvl
) as (
select
n.object_id,
n.id,
array [n.nm_sort],
?
from
dag_node n
where
n.object_id = ?
union all
select
n.object_id,
n.id,
cast ( path || n.nm_sort as varchar ( ?) []) ,
sn.lvl + ?
from
dag_node n
inner join sub_node sn on ( n.parent_id = sn.id) )
select distinct
t.nm prinm,
t.nm_html prinmhtml,
t.secondary_nm secondarynm,
t.acc_db_cd accdbcd,
t.acc_txt termacc,
t.is_leaf isleaf,
t.has_chems haschems,
t.has_diseases hasdiseases,
t.has_exposures hasexposures,
t.has_genes hasgenes,
sn.lvl,
sn.path,
max ( sn.lvl) over ( ) maxlvl,
t.has_phenotypes hasphenotypes
from
sub_node sn
inner join term t on sn.object_id = t.id
where
sn.lvl <= ?
order by
sn.path;
Times Reported Time consuming queries #9
Day
Hour
Count
Duration
Avg duration
Jun 29 05 4 8s787ms 2s196ms 12 1 1s925ms 1s925ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 5s270ms - Times executed: 2 ]
[ User: qaeu - Total duration: 3s345ms - Times executed: 1 ]
x Hide
WITH recursive sub_node (
object_id,
id,
path,
lvl
) AS (
SELECT
n.object_id,
n.id,
ARRAY [n.nm_sort],
1
FROM
dag_node n
WHERE
n.object_id = '589967'
UNION ALL
SELECT
n.object_id,
n.id,
CAST ( path || n.nm_sort AS varchar ( 600 ) []) ,
sn.lvl + 1
FROM
dag_node n
INNER JOIN sub_node sn ON ( n.parent_id = sn.id) )
SELECT
/* TreeTermBasicsDAO.getDescendants */
DISTINCT t.nm priNm,
t.nm_html priNmHtml,
t.secondary_nm secondaryNm,
t.acc_db_cd accDbCd,
t.acc_txt termAcc,
t.is_leaf isLeaf,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_genes hasGenes,
sn.lvl,
sn.path,
MAX ( sn.lvl) OVER ( ) maxLvl,
t.has_phenotypes hasPhenotypes
FROM
sub_node sn
INNER JOIN term t ON sn.object_id = t.id
WHERE
sn.lvl <= 2
ORDER BY
sn.path;
Date: 2024-06-29 05:40:12
Duration: 3s345ms
Database: ctdprd51
User: qaeu
Bind query: yes
WITH recursive sub_node (
object_id,
id,
path,
lvl
) AS (
SELECT
n.object_id,
n.id,
ARRAY [n.nm_sort],
1
FROM
dag_node n
WHERE
n.object_id = '589967'
UNION ALL
SELECT
n.object_id,
n.id,
CAST ( path || n.nm_sort AS varchar ( 600 ) []) ,
sn.lvl + 1
FROM
dag_node n
INNER JOIN sub_node sn ON ( n.parent_id = sn.id) )
SELECT
/* TreeTermBasicsDAO.getDescendants */
DISTINCT t.nm priNm,
t.nm_html priNmHtml,
t.secondary_nm secondaryNm,
t.acc_db_cd accDbCd,
t.acc_txt termAcc,
t.is_leaf isLeaf,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_genes hasGenes,
sn.lvl,
sn.path,
MAX ( sn.lvl) OVER ( ) maxLvl,
t.has_phenotypes hasPhenotypes
FROM
sub_node sn
INNER JOIN term t ON sn.object_id = t.id
WHERE
sn.lvl <= 2
ORDER BY
sn.path;
Date: 2024-06-29 05:35:12
Duration: 3s344ms
Database: ctdprd51
User: pubeu
Bind query: yes
WITH recursive sub_node (
object_id,
id,
path,
lvl
) AS (
SELECT
n.object_id,
n.id,
ARRAY [n.nm_sort],
1
FROM
dag_node n
WHERE
n.object_id = '649767'
UNION ALL
SELECT
n.object_id,
n.id,
CAST ( path || n.nm_sort AS varchar ( 600 ) []) ,
sn.lvl + 1
FROM
dag_node n
INNER JOIN sub_node sn ON ( n.parent_id = sn.id) )
SELECT
/* TreeTermBasicsDAO.getDescendants */
DISTINCT t.nm priNm,
t.nm_html priNmHtml,
t.secondary_nm secondaryNm,
t.acc_db_cd accDbCd,
t.acc_txt termAcc,
t.is_leaf isLeaf,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_genes hasGenes,
sn.lvl,
sn.path,
MAX ( sn.lvl) OVER ( ) maxLvl,
t.has_phenotypes hasPhenotypes
FROM
sub_node sn
INNER JOIN term t ON sn.object_id = t.id
WHERE
sn.lvl <= 4
ORDER BY
sn.path;
Date: 2024-06-29 12:38:24
Duration: 1s925ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
10
5
Details
10s222ms
1s240ms
3s102ms
2s44ms
select
d.nm diseasenm,
d.acc_txt diseaseacc,
d.acc_db_cd diseaseaccdbcd,
d.id diseaseid,
g.nm genesymbol,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid,
gd.network_score networkscore,
gd.indirect_chem_qty inferredcount,
gd.reference_qty referencecount,
gd.exposure_reference_qty exposurereferencecount,
case when gd.curated_reference_qty > ? then
(
select
string_agg ( a.action_type_cd || ? || a.action_type_nm, ?)
from
gene_disease_axn a
where
a.gene_id = gd.gene_id
and a.disease_id = gd.disease_id)
else
null
end actiontypes
from
gene_disease gd
inner join term g on gd.gene_id = g.id
inner join term d on gd.disease_id = d.id
where
gd.disease_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
order by
actiontypes,
gd.network_score desc nulls last ,
g.nm_sort,
d.nm_sort
limit ? offset ?;
Times Reported Time consuming queries #10
Day
Hour
Count
Duration
Avg duration
Jun 29 13 2 4s343ms 2s171ms 14 1 2s678ms 2s678ms 20 1 1s942ms 1s942ms 21 1 1s256ms 1s256ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 8s981ms - Times executed: 4 ]
x Hide
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2082860')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 OFFSET 150 ;
Date: 2024-06-29 13:19:47
Duration: 3s102ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2075512')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 OFFSET 50 ;
Date: 2024-06-29 14:10:49
Duration: 2s678ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2074013')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 OFFSET 303800 ;
Date: 2024-06-29 20:20:46
Duration: 1s942ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
11
5
Details
7s7ms
1s195ms
1s569ms
1s401ms
select
fg.nm fromgenesymbol,
fg.acc_txt fromgeneacc,
tg.nm togenesymbol,
tg.acc_txt togeneacc,
ft.nm fromtaxonnm,
ft.secondary_nm fromtaxoncommonnm,
ft.acc_txt fromtaxonacc,
tt.nm totaxonnm,
tt.secondary_nm totaxoncommonnm,
tt.acc_txt totaxonacc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
select
string_agg ( ggt.throughput_txt, ? order by ggt.throughput_txt)
from
gene_gene_ref_throughput ggt
where
ggt.gene_gene_reference_id = ggr.id) throughput,
count ( * ) over ( ) fullrowcount
from
gene_gene_reference ggr
inner join term fg on ggr.from_gene_id = fg.id
inner join term tg on ggr.to_gene_id = tg.id
inner join term ft on ggr.from_taxon_id = ft.id
inner join term tt on ggr.to_taxon_id = tt.id
where
ggr.reference_id = ?
order by
fg.nm_sort,
tg.nm_sort
limit ?;
Times Reported Time consuming queries #11
Day
Hour
Count
Duration
Avg duration
Jun 29 05 4 5s811ms 1s452ms 21 1 1s195ms 1s195ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 1s569ms - Times executed: 1 ]
[ User: qaeu - Total duration: 1s502ms - Times executed: 1 ]
x Hide
SELECT
/* ReferenceGeneGeneIxnsDAO */
fg.nm fromGeneSymbol,
fg.acc_txt fromGeneAcc,
tg.nm toGeneSymbol,
tg.acc_txt toGeneAcc,
ft.nm fromTaxonNm,
ft.secondary_nm fromTaxonCommonNm,
ft.acc_txt fromTaxonAcc,
tt.nm toTaxonNm,
tt.secondary_nm toTaxonCommonNm,
tt.acc_txt toTaxonAcc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
SELECT
STRING_AGG ( ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt)
FROM
gene_gene_ref_throughput ggt
WHERE
ggt.gene_gene_reference_id = ggr.id) throughput,
COUNT ( * ) OVER ( ) fullRowCount
FROM
gene_gene_reference ggr
INNER JOIN term fg ON ggr.from_gene_id = fg.id
INNER JOIN term tg ON ggr.to_gene_id = tg.id
INNER JOIN term ft ON ggr.from_taxon_id = ft.id
INNER JOIN term tt ON ggr.to_taxon_id = tt.id
WHERE
ggr.reference_id = '111363'
ORDER BY
fg.nm_sort,
tg.nm_sort
LIMIT 50 ;
Date: 2024-06-29 05:38:06
Duration: 1s569ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ReferenceGeneGeneIxnsDAO */
fg.nm fromGeneSymbol,
fg.acc_txt fromGeneAcc,
tg.nm toGeneSymbol,
tg.acc_txt toGeneAcc,
ft.nm fromTaxonNm,
ft.secondary_nm fromTaxonCommonNm,
ft.acc_txt fromTaxonAcc,
tt.nm toTaxonNm,
tt.secondary_nm toTaxonCommonNm,
tt.acc_txt toTaxonAcc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
SELECT
STRING_AGG ( ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt)
FROM
gene_gene_ref_throughput ggt
WHERE
ggt.gene_gene_reference_id = ggr.id) throughput,
COUNT ( * ) OVER ( ) fullRowCount
FROM
gene_gene_reference ggr
INNER JOIN term fg ON ggr.from_gene_id = fg.id
INNER JOIN term tg ON ggr.to_gene_id = tg.id
INNER JOIN term ft ON ggr.from_taxon_id = ft.id
INNER JOIN term tt ON ggr.to_taxon_id = tt.id
WHERE
ggr.reference_id = '111363'
ORDER BY
fg.nm_sort,
tg.nm_sort
LIMIT 50 ;
Date: 2024-06-29 05:43:07
Duration: 1s502ms
Database: ctdprd51
User: qaeu
Bind query: yes
SELECT
/* ReferenceGeneGeneIxnsDAO */
fg.nm fromGeneSymbol,
fg.acc_txt fromGeneAcc,
tg.nm toGeneSymbol,
tg.acc_txt toGeneAcc,
ft.nm fromTaxonNm,
ft.secondary_nm fromTaxonCommonNm,
ft.acc_txt fromTaxonAcc,
tt.nm toTaxonNm,
tt.secondary_nm toTaxonCommonNm,
tt.acc_txt toTaxonAcc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
SELECT
STRING_AGG ( ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt)
FROM
gene_gene_ref_throughput ggt
WHERE
ggt.gene_gene_reference_id = ggr.id) throughput,
COUNT ( * ) OVER ( ) fullRowCount
FROM
gene_gene_reference ggr
INNER JOIN term fg ON ggr.from_gene_id = fg.id
INNER JOIN term tg ON ggr.to_gene_id = tg.id
INNER JOIN term ft ON ggr.from_taxon_id = ft.id
INNER JOIN term tt ON ggr.to_taxon_id = tt.id
WHERE
ggr.reference_id = '111363'
ORDER BY
fg.nm_sort,
tg.nm_sort
LIMIT 50 ;
Date: 2024-06-29 05:43:08
Duration: 1s452ms
Bind query: yes
x Hide
12
3
Details
15s912ms
3s114ms
8s435ms
5s304ms
select
d.nm diseasenm,
d.acc_txt diseaseacc,
d.acc_db_cd diseaseaccdbcd,
d.id diseaseid,
g.nm genesymbol,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid,
gd.network_score networkscore,
gd.indirect_chem_qty inferredcount,
gd.reference_qty referencecount,
gd.exposure_reference_qty exposurereferencecount,
case when gd.curated_reference_qty > ? then
(
select
string_agg ( a.action_type_cd || ? || a.action_type_nm, ?)
from
gene_disease_axn a
where
a.gene_id = gd.gene_id
and a.disease_id = gd.disease_id)
else
null
end actiontypes
from
gene_disease gd
inner join term g on gd.gene_id = g.id
inner join term d on gd.disease_id = d.id
where
gd.disease_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
order by
gd.indirect_chem_qty desc ,
g.nm_sort,
d.nm_sort
limit ?;
Times Reported Time consuming queries #12
Day
Hour
Count
Duration
Avg duration
Jun 29 03 1 8s435ms 8s435ms 04 1 4s362ms 4s362ms 09 1 3s114ms 3s114ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 3s114ms - Times executed: 1 ]
x Hide
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2073988')
ORDER BY
gd.indirect_chem_qty DESC ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-06-29 03:48:34
Duration: 8s435ms
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2074277')
ORDER BY
gd.indirect_chem_qty DESC ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-06-29 04:03:35
Duration: 4s362ms
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2082860')
ORDER BY
gd.indirect_chem_qty DESC ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-06-29 09:46:13
Duration: 3s114ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
13
3
Details
7s395ms
1s253ms
3s257ms
2s465ms
select distinct
associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm,
associatedterm.id associatedtermid,
ptr.ixn_id ixnid,
associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort,
coalesce ( associatedterm.secondary_nm, ?) casrn,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype,
phenotypeterm.id phenotypeid,
(
select
string_agg ( distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce ( taxonterm.secondary_nm, ?) , ?) ) as taxonterms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
count ( distinct taxonterm.nm) taxoncount,
i.ixn_prose_html ixnprosehtml,
i.ixn_prose_txt ixnprose,
i.sort_txt ixnsort,
(
select
string_agg ( distinct r.acc_txt, ?) ) as references,
count ( distinct ptr.reference_id) refcount,
pt.indirect_term_qty inferredcount,
count ( * ) over ( ) fullrowcount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedterm on ptr.term_id = associatedterm.id
inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id
left outer join term taxonterm on ptr.taxon_id = taxonterm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedterm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id
where
associatedterm.id = any ( array ( (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?) ) )
and ptr.term_object_type_id = ?
group by
associatedterm,
associatedtermnmsort,
phenotype,
casrn,
ixnid,
ixnprosehtml,
ixnprose,
ixnsort,
associatedtermid,
phenotypeid,
inferredcount
order by
associatedtermnmsort
limit ? offset ?;
Times Reported Time consuming queries #13
Day
Hour
Count
Duration
Avg duration
Jun 29 01 2 4s511ms 2s255ms 06 1 2s884ms 2s884ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 3s257ms - Times executed: 1 ]
x Hide
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
associatedTerm.id = ANY ( ARRAY ( (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1428329') ) )
and ptr.term_object_type_id = 2
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort
LIMIT 50 OFFSET 350 ;
Date: 2024-06-29 01:27:22
Duration: 3s257ms
Database: ctdprd51
User: pubeu
Bind query: yes
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
associatedTerm.id = ANY ( ARRAY ( (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1426816') ) )
and ptr.term_object_type_id = 2
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort
LIMIT 50 OFFSET 82300 ;
Date: 2024-06-29 06:18:30
Duration: 2s884ms
Bind query: yes
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
associatedTerm.id = ANY ( ARRAY ( (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1318587') ) )
and ptr.term_object_type_id = 2
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort
LIMIT 50 OFFSET 37500 ;
Date: 2024-06-29 01:45:11
Duration: 1s253ms
Bind query: yes
x Hide
14
3
Details
6s806ms
1s100ms
3s865ms
2s268ms
select
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
(
select
string_agg ( distinct stressorterm.nm || ? || (
select
cd
from object_type
where
id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?) ) as stressoragents,
(
select
string_agg ( distinct coalesce ( receptorterm.nm, ?) || ? || coalesce ( (
select
cd
from object_type
where
id = receptorterm.object_type_id) , ?) || ? || coalesce ( receptorterm.nm_html, ?) || ? || coalesce ( receptorterm.acc_txt, ?) || ? || coalesce ( receptorterm.acc_db_cd, ?) || ? || receptor.description, ?) ) as receptors,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
(
select
string_agg ( distinct location.locality_txt, ?) ) as localities,
(
select
string_agg ( distinct event.medium_nm || ? || coalesce ( event.medium_term_acc_txt, ?) , ?) ) as assaymediums,
(
select
string_agg ( distinct exposuremarkerterm.nm || ? || (
select
cd
from object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?) ) as assayedmarkers,
(
select
string_agg ( distinct diseaseterm.nm || ? || (
select
cd
from object_type
where
id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?) ) as diseases,
(
select
string_agg ( distinct phenotypeterm.nm || ? || (
select
cd
from object_type
where
id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?) ) as phenotypes,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
re.author_summary summary,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join reference r on e.reference_id = r.id
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join exp_event_location location on e.exp_event_id = location.exp_event_id
left outer join country on location.country_id = country.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
inner join reference_exp re on e.reference_id = re.reference_id
left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id
where
e.reference_id = any ( array (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like ?)
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressoragents;
Times Reported Time consuming queries #14
Day
Hour
Count
Duration
Avg duration
Jun 29 01 1 3s865ms 3s865ms 04 1 1s839ms 1s839ms 13 1 1s100ms 1s100ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 1s100ms - Times executed: 1 ]
x Hide
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1417912')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1417912')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressorAgents;
Date: 2024-06-29 01:51:48
Duration: 3s865ms
Bind query: yes
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1403663')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1403663')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressorAgents;
Date: 2024-06-29 04:25:00
Duration: 1s839ms
Bind query: yes
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1406035')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1406035')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressorAgents;
Date: 2024-06-29 13:34:15
Duration: 1s100ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
15
3
Details
6s208ms
1s461ms
2s404ms
2s69ms
select
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
(
select
string_agg ( distinct stressorterm.nm || ? || (
select
cd
from object_type
where
id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?) ) as stressoragents,
(
select
string_agg ( distinct coalesce ( receptorterm.nm, ?) || ? || coalesce ( (
select
cd
from object_type
where
id = receptorterm.object_type_id) , ?) || ? || coalesce ( receptorterm.nm_html, ?) || ? || coalesce ( receptorterm.acc_txt, ?) || ? || coalesce ( receptorterm.acc_db_cd, ?) || ? || receptor.description, ?) ) as receptors,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
(
select
string_agg ( distinct location.locality_txt, ?) ) as localities,
(
select
string_agg ( distinct event.medium_nm || ? || coalesce ( event.medium_term_acc_txt, ?) , ?) ) as assaymediums,
(
select
string_agg ( distinct exposuremarkerterm.nm || ? || (
select
cd
from object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?) ) as assayedmarkers,
(
select
string_agg ( distinct diseaseterm.nm || ? || (
select
cd
from object_type
where
id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?) ) as diseases,
(
select
string_agg ( distinct phenotypeterm.nm || ? || (
select
cd
from object_type
where
id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?) ) as phenotypes,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
re.author_summary summary,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join reference r on e.reference_id = r.id
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join exp_event_location location on e.exp_event_id = location.exp_event_id
left outer join country on location.country_id = country.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
inner join reference_exp re on e.reference_id = re.reference_id
left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id
where
e.reference_id = any ( array (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like ?)
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
associatedstudytitles
limit ?;
Times Reported Time consuming queries #15
Day
Hour
Count
Duration
Avg duration
Jun 29 06 1 1s461ms 1s461ms 10 1 2s342ms 2s342ms 15 1 2s404ms 2s404ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 3s803ms - Times executed: 2 ]
x Hide
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1278377')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1278377')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
associatedStudyTitles
LIMIT 50 ;
Date: 2024-06-29 15:05:55
Duration: 2s404ms
Bind query: yes
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1278377')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1278377')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
associatedStudyTitles
LIMIT 50 ;
Date: 2024-06-29 10:32:52
Duration: 2s342ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1317217')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1317217')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
associatedStudyTitles
LIMIT 50 ;
Date: 2024-06-29 06:37:01
Duration: 1s461ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
16
3
Details
4s76ms
1s296ms
1s410ms
1s358ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
or receptorterm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort
limit ? offset ?;
Times Reported Time consuming queries #16
Day
Hour
Count
Duration
Avg duration
Jun 29 02 1 1s369ms 1s369ms 03 1 1s410ms 1s410ms 08 1 1s296ms 1s296ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 1s410ms - Times executed: 1 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2077421')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2077421')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 OFFSET 100 ;
Date: 2024-06-29 03:07:42
Duration: 1s410ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2072283')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2072283')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 OFFSET 50 ;
Date: 2024-06-29 02:54:26
Duration: 1s369ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2071842')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2071842')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 OFFSET 200 ;
Date: 2024-06-29 08:21:38
Duration: 1s296ms
Bind query: yes
x Hide
17
2
Details
3m8s
1s488ms
3m6s
1m34s
select
phenotypeterm.nm gonm,
phenotypeterm.nm_html gonmhtml,
phenotypeterm.acc_txt goacc,
phenotypeterm.id goid,
diseaseterm.nm diseasenm,
diseaseterm.acc_txt diseaseacc,
diseaseterm.acc_db_cd diseaseaccdbcd,
diseaseterm.id diseaseid,
via_gene_qty genenetworkcount,
via_chem_qty chemnetworkcount,
indirect_reference_qty referencecount,
count ( * ) over ( ) fullrowcount
from
phenotype_term pt
inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id
inner join term diseaseterm on pt.term_id = diseaseterm.id
where
phenotypeterm.id in ( select distinct
dp.descendant_object_id
from
dag_path dp
where
dp.ancestor_object_id = ?)
and diseaseterm.object_type_id = ?
order by
chemnetworkcount desc ,
genenetworkcount desc
limit ?;
Times Reported Time consuming queries #17
Day
Hour
Count
Duration
Avg duration
Jun 29 07 1 3m6s 3m6s 08 1 1s488ms 1s488ms
x Hide
Examples
SELECT
/* GoDiseasesDAO */
phenotypeTerm.nm goNm,
phenotypeTerm.nm_html goNmHTML,
phenotypeTerm.acc_txt goAcc,
phenotypeTerm.id goId,
diseaseTerm.nm diseaseNm,
diseaseTerm.acc_txt diseaseAcc,
diseaseTerm.acc_db_cd diseaseAccDBCd,
diseaseTerm.id diseaseId,
via_gene_qty geneNetworkCount,
via_chem_qty chemNetworkCount,
indirect_reference_qty referenceCount,
COUNT ( * ) OVER ( ) fullRowCount
FROM
phenotype_term pt
inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id
inner join term diseaseTerm on pt.term_id = diseaseTerm.id
WHERE
phenotypeTerm.id IN ( select distinct
dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id = '1207417')
and diseaseTerm.object_type_id = 3
ORDER BY
chemNetworkCount desc ,
geneNetworkCount desc
LIMIT 50 ;
Date: 2024-06-29 07:02:46
Duration: 3m6s
Bind query: yes
SELECT
/* GoDiseasesDAO */
phenotypeTerm.nm goNm,
phenotypeTerm.nm_html goNmHTML,
phenotypeTerm.acc_txt goAcc,
phenotypeTerm.id goId,
diseaseTerm.nm diseaseNm,
diseaseTerm.acc_txt diseaseAcc,
diseaseTerm.acc_db_cd diseaseAccDBCd,
diseaseTerm.id diseaseId,
via_gene_qty geneNetworkCount,
via_chem_qty chemNetworkCount,
indirect_reference_qty referenceCount,
COUNT ( * ) OVER ( ) fullRowCount
FROM
phenotype_term pt
inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id
inner join term diseaseTerm on pt.term_id = diseaseTerm.id
WHERE
phenotypeTerm.id IN ( select distinct
dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id = '1218658')
and diseaseTerm.object_type_id = 3
ORDER BY
chemNetworkCount desc ,
geneNetworkCount desc
LIMIT 50 ;
Date: 2024-06-29 08:56:06
Duration: 1s488ms
Bind query: yes
x Hide
18
2
Details
14s801ms
1s920ms
12s880ms
7s400ms
select
d.nm diseasenm,
d.acc_txt diseaseacc,
d.acc_db_cd diseaseaccdbcd,
d.id diseaseid,
g.nm genesymbol,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid,
gd.network_score networkscore,
gd.indirect_chem_qty inferredcount,
gd.reference_qty referencecount,
gd.exposure_reference_qty exposurereferencecount,
case when gd.curated_reference_qty > ? then
(
select
string_agg ( a.action_type_cd || ? || a.action_type_nm, ?)
from
gene_disease_axn a
where
a.gene_id = gd.gene_id
and a.disease_id = gd.disease_id)
else
null
end actiontypes
from
gene_disease gd
inner join term g on gd.gene_id = g.id
inner join term d on gd.disease_id = d.id
where
gd.disease_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
order by
actiontypes,
gd.network_score desc nulls last ,
g.nm_sort,
d.nm_sort;
Times Reported Time consuming queries #18
Day
Hour
Count
Duration
Avg duration
Jun 29 09 1 1s920ms 1s920ms 10 1 12s880ms 12s880ms
x Hide
Examples
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2074277')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort;
Date: 2024-06-29 10:23:11
Duration: 12s880ms
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2082028')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort;
Date: 2024-06-29 09:31:44
Duration: 1s920ms
Bind query: yes
x Hide
19
2
Details
9s957ms
4s927ms
5s30ms
4s978ms
select
ii.cd,
count ( ii.id) cnt
from (
select
ot.cd,
tl.term_id id
from
object_type ot
inner join term_label tl on ot.id = tl.object_type_id
where
tl.nm_fts @@ to_tsquery ( ?, ?)
union
select
?,
r.id
from
reference r
where
r.title_abstract_fts @@ to_tsquery ( ?, ?)
or r.id in (
select
rpr.reference_id
from
reference_party_role rpr
inner join reference_party rp on rpr.reference_party_id = rp.id
where ( substr ( get_reference_party_nm_sort ( rp.required_nm) , ?, ?)
like ?) )
union
select
ot.cd,
l.object_id
from
db_link l
inner join object_type ot on l.object_type_id = ot.id
where
l.type_cd = ?
and ( upper ( l.acc_txt)
like ?) ) ii
group by
ii.cd;
Times Reported Time consuming queries #19
Day
Hour
Count
Duration
Avg duration
Jun 29 05 1 5s30ms 5s30ms 07 1 4s927ms 4s927ms
x Hide
Examples
SELECT
/* BasicCountsDAO gen */
ii.cd,
COUNT ( ii.id) cnt
FROM (
SELECT
ot.cd,
tl.term_id id
FROM
object_type ot
INNER JOIN term_label tl ON ot.id = tl.object_type_id
WHERE
tl.nm_fts @@ to_tsquery ( 'common.english_nostops', 'PFLUV_G00236330')
UNION
SELECT
'reference',
r.id
FROM
reference r
WHERE
r.title_abstract_fts @@ to_tsquery ( 'pg_catalog.english', 'PFLUV_G00236330')
OR r.id IN (
SELECT
rpr.reference_id
FROM
reference_party_role rpr
INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id
WHERE ( SUBSTR ( get_reference_party_nm_sort ( rp.required_nm) , 1 , 128 )
LIKE 'PFLUV_G00236330') )
UNION
SELECT
ot.cd,
l.object_id
FROM
db_link l
INNER JOIN object_type ot on l.object_type_id = ot.id
WHERE
l.type_cd = 'A'
AND ( upper ( l.acc_txt)
LIKE 'PFLUV_G00236330') ) ii
GROUP BY
ii.cd;
Date: 2024-06-29 05:33:39
Duration: 5s30ms
Bind query: yes
SELECT
/* BasicCountsDAO gen */
ii.cd,
COUNT ( ii.id) cnt
FROM (
SELECT
ot.cd,
tl.term_id id
FROM
object_type ot
INNER JOIN term_label tl ON ot.id = tl.object_type_id
WHERE
tl.nm_fts @@ to_tsquery ( 'common.english_nostops', 'DGK_1')
UNION
SELECT
'reference',
r.id
FROM
reference r
WHERE
r.title_abstract_fts @@ to_tsquery ( 'pg_catalog.english', 'DGK_1')
OR r.id IN (
SELECT
rpr.reference_id
FROM
reference_party_role rpr
INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id
WHERE ( SUBSTR ( get_reference_party_nm_sort ( rp.required_nm) , 1 , 128 )
LIKE 'DGK_1') )
UNION
SELECT
ot.cd,
l.object_id
FROM
db_link l
INNER JOIN object_type ot on l.object_type_id = ot.id
WHERE
l.type_cd = 'A'
AND ( upper ( l.acc_txt)
LIKE 'DGK_1') ) ii
GROUP BY
ii.cd;
Date: 2024-06-29 07:13:17
Duration: 4s927ms
Bind query: yes
x Hide
20
2
Details
8s445ms
4s208ms
4s236ms
4s222ms
select
? "Input",
sqi.chem_nm "ChemicalName",
sqi.chem_acc_txt "ChemicalID",
sqi.casrn "CasRN",
sqi.gene_symbol "GeneSymbol",
sqi.gene_acc_txt "GeneID",
sqi.ontology_nm "Ontology",
sqi.go_term_nm "GoTermName",
sqi.go_acc_txt "GoTermID"
from ( with sq as (
select distinct
c.id chem_id,
c.nm chem_nm,
c.acc_txt chem_acc_txt,
c.secondary_nm casrn,
c.nm_sort chem_nm_sort,
gcr.gene_id,
g.nm gene_symbol,
g.acc_txt gene_acc_txt,
g.nm_sort gene_symbol_sort
from
term c
inner join gene_chem_reference gcr on c.id = gcr.chem_id
inner join term g on gcr.gene_id = g.id
where ( c.id = ?) )
select distinct
sq.chem_nm,
sq.chem_acc_txt,
sq.casrn,
sq.gene_symbol,
sq.gene_acc_txt,
gt.nm go_term_nm,
gt.acc_txt go_acc_txt,
sq.chem_nm_sort,
sq.gene_symbol_sort,
gt.nm_sort,
d.nm ontology_nm
from
sq
inner join gene_go_annot gga on sq.gene_id = gga.gene_id
inner join dag_node gt on gga.go_term_id = gt.object_id
inner join dag d on gt.dag_id = d.id
where
gga.is_not = false
and ( d.id = ?
or d.id = ?)
order by
sq.chem_nm_sort,
sq.gene_symbol_sort,
d.nm,
gt.nm_sort) sqi;
Times Reported Time consuming queries #20
Day
Hour
Count
Duration
Avg duration
Jun 29 05 2 8s445ms 4s222ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 4s236ms - Times executed: 1 ]
x Hide
SELECT
/* BatchChemGODAO */
'ddt' "Input",
sqi.chem_nm "ChemicalName",
sqi.chem_acc_txt "ChemicalID",
sqi.casRN "CasRN",
sqi.gene_symbol "GeneSymbol",
sqi.gene_acc_txt "GeneID",
sqi.ontology_nm "Ontology",
sqi.go_term_nm "GoTermName",
sqi.go_acc_txt "GoTermID"
FROM ( WITH sq AS (
SELECT DISTINCT
c.id chem_id,
c.nm chem_nm,
c.acc_txt chem_acc_txt,
c.secondary_nm casRN,
c.nm_sort chem_nm_sort,
gcr.gene_id,
g.nm gene_symbol,
g.acc_txt gene_acc_txt,
g.nm_sort gene_symbol_sort
FROM
term c
INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id
INNER JOIN term g ON gcr.gene_id = g.id
WHERE ( c.id = 1291235 ) )
SELECT DISTINCT
sq.chem_nm,
sq.chem_acc_txt,
sq.casRN,
sq.gene_symbol,
sq.gene_acc_txt,
gt.nm go_term_nm,
gt.acc_txt go_acc_txt,
sq.chem_nm_sort,
sq.gene_symbol_sort,
gt.nm_sort,
d.nm ontology_nm
FROM
sq
INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id
INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
gga.is_not = false
AND ( d.id = 5
OR d.id = 4 )
ORDER BY
sq.chem_nm_sort,
sq.gene_symbol_sort,
d.nm,
gt.nm_sort) sqi;
Date: 2024-06-29 05:38:26
Duration: 4s236ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* BatchChemGODAO */
'ddt' "Input",
sqi.chem_nm "ChemicalName",
sqi.chem_acc_txt "ChemicalID",
sqi.casRN "CasRN",
sqi.gene_symbol "GeneSymbol",
sqi.gene_acc_txt "GeneID",
sqi.ontology_nm "Ontology",
sqi.go_term_nm "GoTermName",
sqi.go_acc_txt "GoTermID"
FROM ( WITH sq AS (
SELECT DISTINCT
c.id chem_id,
c.nm chem_nm,
c.acc_txt chem_acc_txt,
c.secondary_nm casRN,
c.nm_sort chem_nm_sort,
gcr.gene_id,
g.nm gene_symbol,
g.acc_txt gene_acc_txt,
g.nm_sort gene_symbol_sort
FROM
term c
INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id
INNER JOIN term g ON gcr.gene_id = g.id
WHERE ( c.id = 1291235 ) )
SELECT DISTINCT
sq.chem_nm,
sq.chem_acc_txt,
sq.casRN,
sq.gene_symbol,
sq.gene_acc_txt,
gt.nm go_term_nm,
gt.acc_txt go_acc_txt,
sq.chem_nm_sort,
sq.gene_symbol_sort,
gt.nm_sort,
d.nm ontology_nm
FROM
sq
INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id
INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
gga.is_not = false
AND ( d.id = 5
OR d.id = 4 )
ORDER BY
sq.chem_nm_sort,
sq.gene_symbol_sort,
d.nm,
gt.nm_sort) sqi;
Date: 2024-06-29 05:43:26
Duration: 4s208ms
Bind query: yes
x Hide
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