pgBadger-
Global information
- Generated on Thu Oct 31 04:15:05 2024
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20241030
- Parsed 32,012 log entries in 4s
- Log start from 2024-10-30 00:00:01 to 2024-10-30 23:59:41
-
Overview
Global Stats
- 254 Number of unique normalized queries
- 869 Number of queries
- 16h13m Total query duration
- 2024-10-30 00:00:42 First query
- 2024-10-30 23:54:19 Last query
- 2 queries/s at 2024-10-30 12:03:12 Query peak
- 16h13m Total query duration
- 0ms Prepare/parse total duration
- 1s757ms Bind total duration
- 16h12m58s Execute total duration
- 1,367 Number of events
- 12 Number of unique normalized events
- 1,038 Max number of times the same event was reported
- 0 Number of cancellation
- 48 Total number of automatic vacuums
- 72 Total number of automatic analyzes
- 1,745 Number temporary file
- 1.00 GiB Max size of temporary file
- 273.06 MiB Average size of temporary file
- 2,124 Total number of sessions
- 109 sessions at 2024-10-30 00:00:01 Session peak
- 47d19h23m25s Total duration of sessions
- 32m24s Average duration of sessions
- 0 Average queries per session
- 27s486ms Average queries duration per session
- 31m57s Average idle time per session
- 2,124 Total number of connections
- 9 connections/s at 2024-10-30 05:35:08 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 2 queries/s Query Peak
- 2024-10-30 12:03:12 Date
SELECT Traffic
Key values
- 2 queries/s Query Peak
- 2024-10-30 07:36:31 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2024-10-30 11:57:43 Date
Queries duration
Key values
- 16h13m Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Oct 30 00 12 0ms 18m25s 1m34s 5s117ms 5s247ms 18m30s 01 10 0ms 5s442ms 2s921ms 1s383ms 4s799ms 10s552ms 02 98 0ms 18m12s 2m32s 17m35s 35m4s 1h9m58s 03 25 0ms 17m26s 44s438ms 7s224ms 11s51ms 17m26s 04 29 0ms 17m46s 39s826ms 5s619ms 16s779ms 17m48s 05 50 0ms 11m38s 16s475ms 14s814ms 26s399ms 11m38s 06 25 0ms 36s975ms 5s537ms 5s183ms 9s693ms 54s883ms 07 22 0ms 3m45s 12s436ms 2s800ms 4s121ms 3m49s 08 70 0ms 4m17s 8s122ms 10s973ms 28s274ms 4m34s 09 41 0ms 34m48s 1m11s 37s42ms 1m9s 35m41s 10 41 0ms 36m31s 1m 39s932ms 48s320ms 36m31s 11 50 0ms 42m6s 1m20s 1m49s 3m17s 42m6s 12 44 0ms 5m15s 20s588ms 1m9s 1m24s 5m16s 13 44 0ms 1m16s 9s556ms 38s850ms 54s628ms 1m16s 14 110 0ms 12m48s 18s623ms 1m27s 2m57s 12m52s 15 35 0ms 23m47s 52s452ms 13s371ms 1m14s 23m47s 16 25 0ms 1h36m38s 4m2s 6s207ms 40s56ms 1h36m41s 17 16 0ms 1h5m45s 4m9s 4s119ms 5s661ms 1h5m56s 18 56 0ms 46m46s 1m 43s697ms 1m33s 47m9s 19 12 0ms 5s390ms 1s726ms 1s285ms 2s581ms 5s390ms 20 17 0ms 2h1m31s 7m14s 3s777ms 4s147ms 2h1m54s 21 10 0ms 33m45s 4m18s 1s276ms 3s400ms 33m45s 22 15 0ms 1m14s 6s931ms 1s302ms 3s423ms 1m15s 23 12 0ms 5s107ms 2s222ms 2s171ms 3s965ms 6s320ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Oct 30 00 11 0 1m42s 1s295ms 5s117ms 18m25s 01 10 0 2s921ms 1s171ms 1s383ms 10s552ms 02 98 0 2m32s 12s253ms 17m35s 52m28s 03 25 0 44s438ms 1s886ms 7s224ms 17m26s 04 29 0 39s826ms 1s901ms 5s619ms 17m48s 05 46 0 17s716ms 2s422ms 14s814ms 11m38s 06 15 10 5s537ms 1s436ms 5s183ms 54s883ms 07 22 0 12s436ms 1s206ms 2s800ms 13s229ms 08 70 0 8s122ms 6s169ms 10s973ms 2m28s 09 41 0 1m11s 4s480ms 37s42ms 8m57s 10 31 10 1m 6s129ms 37s336ms 36m31s 11 41 0 1m18s 4s569ms 43s437ms 42m6s 12 20 0 26s195ms 1s254ms 4s102ms 1m13s 13 44 0 9s556ms 11s764ms 38s850ms 1m16s 14 65 8 7s137ms 8s94ms 24s94ms 46s87ms 15 26 0 3s174ms 3s935ms 4s39ms 12s335ms 16 23 0 4m15s 1s753ms 4s214ms 40s56ms 17 15 0 4m25s 1s554ms 4s119ms 1h5m45s 18 32 10 8s965ms 4s346ms 11s548ms 45s931ms 19 12 0 1s726ms 1s16ms 1s285ms 2s761ms 20 17 0 7m14s 1s259ms 3s777ms 2h1m54s 21 10 0 4m18s 0ms 1s276ms 33m45s 22 15 0 6s931ms 1s199ms 1s302ms 1m15s 23 12 0 2s222ms 1s156ms 2s171ms 6s320ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Oct 30 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 12 5 0 0 22s655ms 0ms 0ms 1m24s 15 5 4 0 0 3m14s 0ms 0ms 1m14s 16 1 0 0 0 2m47s 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Oct 30 00 0 10 10.00 0.00% 01 0 10 10.00 0.00% 02 0 98 98.00 0.00% 03 0 25 25.00 0.00% 04 0 29 29.00 0.00% 05 0 50 50.00 0.00% 06 0 15 15.00 0.00% 07 0 26 26.00 0.00% 08 0 70 70.00 0.00% 09 0 44 44.00 0.00% 10 0 28 28.00 0.00% 11 0 30 30.00 0.00% 12 0 41 41.00 0.00% 13 0 44 44.00 0.00% 14 0 102 102.00 0.00% 15 0 35 35.00 0.00% 16 0 26 26.00 0.00% 17 0 16 16.00 0.00% 18 0 46 46.00 0.00% 19 0 12 12.00 0.00% 20 0 17 17.00 0.00% 21 0 11 11.00 0.00% 22 0 15 15.00 0.00% 23 0 12 12.00 0.00% Day Hour Count Average / Second Oct 30 00 79 0.02/s 01 82 0.02/s 02 97 0.03/s 03 92 0.03/s 04 90 0.03/s 05 97 0.03/s 06 83 0.02/s 07 86 0.02/s 08 101 0.03/s 09 95 0.03/s 10 98 0.03/s 11 86 0.02/s 12 92 0.03/s 13 107 0.03/s 14 109 0.03/s 15 88 0.02/s 16 83 0.02/s 17 76 0.02/s 18 87 0.02/s 19 81 0.02/s 20 76 0.02/s 21 76 0.02/s 22 81 0.02/s 23 82 0.02/s Day Hour Count Average Duration Average idle time Oct 30 00 79 30m8s 29m53s 01 82 29m50s 29m50s 02 97 26m24s 23m50s 03 91 26m28s 26m16s 04 90 27m39s 27m26s 05 98 23m54s 23m46s 06 83 29m34s 29m32s 07 86 28m30s 28m27s 08 94 25m33s 25m27s 09 95 26m10s 25m39s 10 97 25m18s 24m53s 11 86 1h19m24s 1h18m37s 12 92 27m5s 26m55s 13 107 22m59s 22m55s 14 109 22m39s 22m20s 15 88 28m9s 27m48s 16 83 27m41s 26m28s 17 76 30m58s 30m5s 18 87 32m57s 32m18s 19 82 35m33s 35m33s 20 76 29m24s 27m47s 21 77 34m2s 33m28s 22 87 1h27m5s 1h27m4s 23 82 28m50s 28m50s -
Connections
Established Connections
Key values
- 9 connections Connection Peak
- 2024-10-30 05:35:08 Date
Connections per database
Key values
- ctdprd51 Main Database
- 2,124 connections Total
Connections per user
Key values
- pubeu Main User
- 2,124 connections Total
-
Sessions
Simultaneous sessions
Key values
- 109 sessions Session Peak
- 2024-10-30 00:00:01 Date
Histogram of session times
Key values
- 1,740 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 2,124 sessions Total
Sessions per user
Key values
- pubeu Main User
- 2,124 sessions Total
Sessions per host
Key values
- 10.12.5.37 Main Host
- 2,124 sessions Total
Host Count Total Duration Average Duration 10.12.5.37 542 8d3h40m5s 21m39s 10.12.5.38 372 7d22h54m51s 30m47s 10.12.5.39 364 7d23h19m20s 31m32s 10.12.5.40 67 12h50m17s 11m29s 10.12.5.45 381 7d23h59m7s 30m14s 10.12.5.46 376 8d11m19s 30m40s 10.12.5.53 1 31s630ms 31s630ms 192.168.201.14 4 8h37m51s 2h9m27s 192.168.201.6 6 3d13h32m4s 14h15m20s ::1 11 3d6h17m54s 7h7m4s -
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 5,019,791 buffers Checkpoint Peak
- 2024-10-30 14:43:26 Date
- 1619.803 seconds Highest write time
- 0.963 seconds Sync time
Checkpoints Wal files
Key values
- 922 files Wal files usage Peak
- 2024-10-30 18:44:55 Date
Checkpoints distance
Key values
- 18,483.47 Mo Distance Peak
- 2024-10-30 18:13:05 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Oct 30 00 2,633 263.828s 0.003s 263.954s 01 1,314 131.831s 0.003s 131.866s 02 1,465 146.886s 0.002s 146.921s 03 359 36.169s 0.002s 36.249s 04 16,212 1,623.764s 0.003s 1,623.847s 05 34,481 1,643.023s 0.002s 1,643.119s 06 780 78.235s 0.002s 78.267s 07 661 66.318s 0.003s 66.348s 08 51,434 1,619.388s 0.012s 1,619.513s 09 40,016 2,364.852s 0.019s 2,364.933s 10 6,088 610.161s 0.003s 610.209s 11 3,343,489 121.002s 1.461s 152.866s 12 689,071 2,250.347s 0.016s 2,264.301s 13 311,831 1,646.514s 0.01s 1,653.451s 14 9,391,844 2,126.444s 0.149s 2,152.833s 15 2,156,533 2,556.788s 0.371s 2,577.601s 16 159,379 1,675.167s 0.004s 1,676.649s 17 337,458 1,619.686s 0.007s 1,621.684s 18 797,972 2,276.091s 3.534s 2,434.943s 19 563,562 3,238.572s 0.01s 3,249.3s 20 189,247 3,443.586s 0.222s 3,444.994s 21 976,071 3,268.176s 0.004s 3,278.469s 22 961 96.452s 0.003s 96.482s 23 764 76.629s 0.002s 76.659s Day Hour Added Removed Recycled Synced files Longest sync Average sync Oct 30 00 0 1 0 91 0.001s 0.002s 01 0 1 0 49 0.002s 0.002s 02 0 0 0 53 0.001s 0.002s 03 0 1 0 34 0.001s 0.002s 04 0 3 0 64 0.002s 0.002s 05 0 22 0 55 0.001s 0.002s 06 0 0 0 98 0.001s 0.002s 07 0 0 0 127 0.001s 0.002s 08 0 37 0 113 0.002s 0.001s 09 0 4 0 292 0.002s 0.002s 10 0 0 0 100 0.001s 0.003s 11 0 45 2,166 177 0.757s 0.065s 12 0 0 1,059 150 0.002s 0.003s 13 0 0 571 104 0.001s 0.002s 14 0 721 1,748 712 0.057s 0.005s 15 0 0 1,614 285 0.133s 0.005s 16 0 0 108 147 0.001s 0.003s 17 0 192 114 69 0.003s 0.001s 18 0 901 10,657 1,007 0.962s 0.166s 19 0 0 876 145 0.001s 0.002s 20 0 86 45 128 0.140s 0.006s 21 0 0 840 176 0.001s 0.003s 22 0 0 0 30 0.002s 0.002s 23 0 0 0 28 0.001s 0.002s Day Hour Count Avg time (sec) Oct 30 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Oct 30 00 12,990.00 kB 2,477,934.50 kB 01 4,123.00 kB 2,007,620.50 kB 02 4,065.50 kB 1,627,232.50 kB 03 1,033.00 kB 1,318,249.00 kB 04 25,906.50 kB 1,072,554.00 kB 05 179,031.50 kB 902,888.00 kB 06 1,702.00 kB 731,668.00 kB 07 2,178.00 kB 593,058.50 kB 08 560,502.00 kB 561,806.00 kB 09 27,041.00 kB 485,337.50 kB 10 20,744.00 kB 379,471.00 kB 11 7,140,625.00 kB 7,342,370.60 kB 12 5,954,119.00 kB 8,805,733.67 kB 13 4,413,593.00 kB 8,105,180.00 kB 14 8,090,864.40 kB 8,912,918.40 kB 15 8,817,951.33 kB 8,999,220.33 kB 16 764,242.67 kB 7,508,386.33 kB 17 4,489,691.00 kB 6,508,513.00 kB 18 8,607,341.41 kB 9,002,079.41 kB 19 7,176,910.00 kB 8,867,746.50 kB 20 716,765.00 kB 7,204,523.67 kB 21 4,758,654.00 kB 8,301,258.67 kB 22 2,821.50 kB 6,519,967.50 kB 23 1,983.50 kB 5,281,656.00 kB -
Temporary Files
Size of temporary files
Key values
- 21.00 GiB Temp Files size Peak
- 2024-10-30 11:33:10 Date
Number of temporary files
Key values
- 24 per second Temp Files Peak
- 2024-10-30 18:10:59 Date
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Oct 30 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 75 73.32 GiB 1001.01 MiB 11 183 144.74 GiB 809.91 MiB 12 155 37.04 GiB 244.69 MiB 13 175 16.29 GiB 95.31 MiB 14 166 31.58 GiB 194.83 MiB 15 0 0 0 16 0 0 0 17 0 0 0 18 983 154.38 GiB 160.82 MiB 19 0 0 0 20 0 0 0 21 8 7.98 GiB 1020.89 MiB 22 0 0 0 23 0 0 0 Queries generating the most temporary files (N)
Rank Count Total size Min size Max size Avg size Query 1 901 151.70 GiB 136.00 KiB 1.00 GiB 172.40 MiB vacuum full analyze;-
VACUUM FULL ANALYZE;
Date: 2024-10-30 18:50:31 Duration: 46m46s
-
VACUUM FULL ANALYZE;
Date: 2024-10-30 18:03:45 Duration: 0ms
2 185 24.18 GiB 8.00 KiB 1.00 GiB 133.83 MiB select * from pgbulkload.pg_bulkload (?);-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-10-30 11:44:24 Duration: 6m30s Database: ctdprd51 User: load Application: pg_bulkload
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-10-30 12:12:16 Duration: 5m15s
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.TERM_ENRICHMENT_AGENT,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.log,parse-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.DUPE}');
Date: 2024-10-30 14:01:24 Duration: 2m59s Database: ctdprd51 User: load Application: pg_bulkload
3 72 71.37 GiB 382.66 MiB 1.00 GiB 1015.09 MiB select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.gene_go_annot gga, pub2.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in;-
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.GENE_GO_ANNOT gga, pub2.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in;
Date: 2024-10-30 11:33:07 Duration: 0ms
4 62 1.98 GiB 6.70 MiB 1.00 GiB 32.68 MiB cluster pub2.term;-
CLUSTER pub2.TERM;
Date: 2024-10-30 18:03:08 Duration: 59s471ms
-
CLUSTER pub2.TERM;
Date: 2024-10-30 18:02:19 Duration: 0ms
5 49 48.11 GiB 110.77 MiB 1.00 GiB 1005.36 MiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.object_type where cd = ?), ptr.term_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.phenotype_term_reference ptr, pub2.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;-
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub2.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;
Date: 2024-10-30 10:50:55 Duration: 0ms
6 26 25.21 GiB 213.34 MiB 1.00 GiB 992.82 MiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;
Date: 2024-10-30 10:10:11 Duration: 0ms
7 25 16.10 GiB 8.00 KiB 1.00 GiB 659.46 MiB alter table pub2.term_enrichment_agent add constraint term_enrichment_agent_pk primary key (term_id, enriched_term_id, agent_term_id);-
ALTER TABLE pub2.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-10-30 14:20:06 Duration: 2m57s
-
ALTER TABLE pub2.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-10-30 14:20:05 Duration: 0ms
8 20 721.26 MiB 18.76 MiB 64.81 MiB 36.06 MiB cluster pub2.term_label;-
CLUSTER pub2.TERM_LABEL;
Date: 2024-10-30 18:03:42 Duration: 34s461ms
-
CLUSTER pub2.TERM_LABEL;
Date: 2024-10-30 18:03:14 Duration: 0ms
9 20 12.49 GiB 8.00 KiB 1.00 GiB 639.26 MiB create unique index gene_disease_reference_ak1 on pub2.gene_disease_reference using btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub2.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-10-30 11:49:55 Duration: 3m8s
-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub2.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-10-30 11:49:55 Duration: 0ms
10 15 6.94 GiB 8.00 KiB 1.00 GiB 473.53 MiB alter table pub2.gene_disease_reference add constraint gene_disease_reference_pk primary key (id);-
ALTER TABLE pub2.gene_disease_reference ADD CONSTRAINT gene_disease_reference_pk PRIMARY KEY (id);
Date: 2024-10-30 11:46:47 Duration: 1m9s
-
ALTER TABLE pub2.gene_disease_reference ADD CONSTRAINT gene_disease_reference_pk PRIMARY KEY (id);
Date: 2024-10-30 11:46:46 Duration: 0ms Database: ctdprd51 User: pub2
11 15 11.50 GiB 261.86 MiB 1.00 GiB 785.06 MiB create index ix_term_enrich_agent_enr_term on pub2.term_enrichment_agent using btree (enriched_term_id);-
CREATE INDEX ix_term_enrich_agent_enr_term ON pub2.term_enrichment_agent USING btree (enriched_term_id);
Date: 2024-10-30 14:21:52 Duration: 1m46s
-
CREATE INDEX ix_term_enrich_agent_enr_term ON pub2.term_enrichment_agent USING btree (enriched_term_id);
Date: 2024-10-30 14:21:51 Duration: 0ms
12 10 6.94 GiB 370.38 MiB 1.00 GiB 710.29 MiB create index ix_gene_disease_ref_mod_tm on pub2.gene_disease_reference using btree (mod_tm);-
CREATE INDEX ix_gene_disease_ref_mod_tm ON pub2.gene_disease_reference USING btree (mod_tm);
Date: 2024-10-30 12:00:29 Duration: 1m23s
-
CREATE INDEX ix_gene_disease_ref_mod_tm ON pub2.gene_disease_reference USING btree (mod_tm);
Date: 2024-10-30 12:00:28 Duration: 0ms
13 10 63.42 MiB 8.00 KiB 13.86 MiB 6.34 MiB alter table pub2.phenotype_term add constraint phenotype_term_pk primary key (phenotype_id, term_id);-
ALTER TABLE pub2.phenotype_term ADD CONSTRAINT phenotype_term_pk PRIMARY KEY (phenotype_id, term_id);
Date: 2024-10-30 14:36:53 Duration: 0ms
14 10 6.94 GiB 358.83 MiB 1.00 GiB 710.29 MiB create index ix_gene_disease_ref_disease on pub2.gene_disease_reference using btree (disease_id);-
CREATE INDEX ix_gene_disease_ref_disease ON pub2.gene_disease_reference USING btree (disease_id);
Date: 2024-10-30 11:54:33 Duration: 1m24s
-
CREATE INDEX ix_gene_disease_ref_disease ON pub2.gene_disease_reference USING btree (disease_id);
Date: 2024-10-30 11:54:33 Duration: 0ms
15 10 6.94 GiB 314.73 MiB 1.00 GiB 710.29 MiB create index ix_gene_disease_ref_net_sc on pub2.gene_disease_reference using btree (network_score);-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub2.gene_disease_reference USING btree (network_score);
Date: 2024-10-30 12:02:50 Duration: 2m21s
-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub2.gene_disease_reference USING btree (network_score);
Date: 2024-10-30 12:02:50 Duration: 0ms
16 10 244.36 MiB 8.00 KiB 49.68 MiB 24.44 MiB alter table pub2.chem_disease_reference add constraint chem_disease_reference_pk primary key (id);-
ALTER TABLE pub2.chem_disease_reference ADD CONSTRAINT chem_disease_reference_pk PRIMARY KEY (id);
Date: 2024-10-30 12:05:27 Duration: 2s849ms
-
ALTER TABLE pub2.chem_disease_reference ADD CONSTRAINT chem_disease_reference_pk PRIMARY KEY (id);
Date: 2024-10-30 12:05:27 Duration: 0ms
17 10 632.36 MiB 8.00 KiB 127.99 MiB 63.24 MiB alter table pub2.gene_disease add constraint gene_disease_pk primary key (gene_id, disease_id);-
ALTER TABLE pub2.gene_disease ADD CONSTRAINT gene_disease_pk PRIMARY KEY (gene_id, disease_id);
Date: 2024-10-30 14:36:21 Duration: 6s372ms
-
ALTER TABLE pub2.gene_disease ADD CONSTRAINT gene_disease_pk PRIMARY KEY (gene_id, disease_id);
Date: 2024-10-30 14:36:21 Duration: 0ms Database: ctdprd51 User: pub2
18 10 6.94 GiB 336.43 MiB 1.00 GiB 710.29 MiB create index ix_gene_disease_ref_dis_gene on pub2.gene_disease_reference using btree (disease_id, gene_id);-
CREATE INDEX ix_gene_disease_ref_dis_gene ON pub2.gene_disease_reference USING btree (disease_id, gene_id);
Date: 2024-10-30 11:57:43 Duration: 1m49s
-
CREATE INDEX ix_gene_disease_ref_dis_gene ON pub2.gene_disease_reference USING btree (disease_id, gene_id);
Date: 2024-10-30 11:57:42 Duration: 0ms
19 10 6.94 GiB 208.82 MiB 1.00 GiB 710.29 MiB create index ix_gene_disease_ref_source_cd on pub2.gene_disease_reference using btree (source_cd);-
CREATE INDEX ix_gene_disease_ref_source_cd ON pub2.gene_disease_reference USING btree (source_cd);
Date: 2024-10-30 11:51:40 Duration: 56s867ms
-
CREATE INDEX ix_gene_disease_ref_source_cd ON pub2.gene_disease_reference USING btree (source_cd);
Date: 2024-10-30 11:51:40 Duration: 0ms
20 10 445.15 MiB 8.00 KiB 91.43 MiB 44.51 MiB create unique index chem_disease_reference_ak1 on pub2.chem_disease_reference using btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);-
CREATE UNIQUE INDEX chem_disease_reference_ak1 ON pub2.chem_disease_reference USING btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);
Date: 2024-10-30 12:05:02 Duration: 6s130ms
-
CREATE UNIQUE INDEX chem_disease_reference_ak1 ON pub2.chem_disease_reference USING btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);
Date: 2024-10-30 12:05:02 Duration: 0ms
21 10 6.94 GiB 371.12 MiB 1.00 GiB 710.29 MiB create index ix_gene_disease_ref_src_db on pub2.gene_disease_reference using btree (source_acc_db_id);-
CREATE INDEX ix_gene_disease_ref_src_db ON pub2.gene_disease_reference USING btree (source_acc_db_id);
Date: 2024-10-30 11:50:43 Duration: 47s839ms
-
CREATE INDEX ix_gene_disease_ref_src_db ON pub2.gene_disease_reference USING btree (source_acc_db_id);
Date: 2024-10-30 11:50:43 Duration: 0ms
22 10 6.94 GiB 326.63 MiB 1.00 GiB 710.29 MiB create index ix_gene_disease_ref_chem on pub2.gene_disease_reference using btree (via_chem_id);-
CREATE INDEX ix_gene_disease_ref_chem ON pub2.gene_disease_reference USING btree (via_chem_id);
Date: 2024-10-30 11:53:08 Duration: 1m28s
-
CREATE INDEX ix_gene_disease_ref_chem ON pub2.gene_disease_reference USING btree (via_chem_id);
Date: 2024-10-30 11:53:08 Duration: 0ms
23 10 6.94 GiB 324.91 MiB 1.00 GiB 710.29 MiB create index ix_gene_disease_ref_reference on pub2.gene_disease_reference using btree (reference_id);-
CREATE INDEX ix_gene_disease_ref_reference ON pub2.gene_disease_reference USING btree (reference_id);
Date: 2024-10-30 11:55:53 Duration: 1m19s
-
CREATE INDEX ix_gene_disease_ref_reference ON pub2.gene_disease_reference USING btree (reference_id);
Date: 2024-10-30 11:55:53 Duration: 0ms
24 10 158.34 MiB 8.00 KiB 32.16 MiB 15.83 MiB alter table pub2.term_enrichment add constraint term_enrichment_pk primary key (term_id, enriched_term_id);-
ALTER TABLE pub2.term_enrichment ADD CONSTRAINT term_enrichment_pk PRIMARY KEY (term_id, enriched_term_id);
Date: 2024-10-30 14:04:07 Duration: 2s733ms
-
ALTER TABLE pub2.term_enrichment ADD CONSTRAINT term_enrichment_pk PRIMARY KEY (term_id, enriched_term_id);
Date: 2024-10-30 14:04:07 Duration: 0ms Database: ctdprd51 User: pub2
25 10 1.02 GiB 8.00 KiB 217.89 MiB 104.80 MiB alter table pub2.phenotype_term_reference add constraint phenotype_term_reference_pk primary key (id);-
ALTER TABLE pub2.phenotype_term_reference ADD CONSTRAINT phenotype_term_reference_pk PRIMARY KEY (id);
Date: 2024-10-30 12:03:03 Duration: 12s308ms
-
ALTER TABLE pub2.phenotype_term_reference ADD CONSTRAINT phenotype_term_reference_pk PRIMARY KEY (id);
Date: 2024-10-30 12:03:02 Duration: 0ms
26 10 6.94 GiB 349.14 MiB 1.00 GiB 710.29 MiB create index ix_gene_disease_reference_ixn on pub2.gene_disease_reference using btree (ixn_id);-
CREATE INDEX ix_gene_disease_reference_ixn ON pub2.gene_disease_reference USING btree (ixn_id);
Date: 2024-10-30 11:59:05 Duration: 1m22s
-
CREATE INDEX ix_gene_disease_reference_ixn ON pub2.gene_disease_reference USING btree (ixn_id);
Date: 2024-10-30 11:59:05 Duration: 0ms
27 8 64.27 MiB 8.00 KiB 16.53 MiB 8.03 MiB alter table pub2.chem_disease add constraint chem_disease_pk primary key (chem_id, disease_id);-
ALTER TABLE pub2.chem_disease ADD CONSTRAINT chem_disease_pk PRIMARY KEY (chem_id, disease_id);
Date: 2024-10-30 14:36:59 Duration: 0ms
28 8 7.98 GiB 999.12 MiB 1.00 GiB 1020.89 MiB select pub2.maint_cached_value_refresh_data_metrics ();-
select pub2.maint_cached_value_refresh_data_metrics ();
Date: 2024-10-30 21:36:28 Duration: 33m45s
-
select pub2.maint_cached_value_refresh_data_metrics ();
Date: 2024-10-30 21:32:10 Duration: 0ms
29 6 5.39 GiB 398.38 MiB 1.00 GiB 919.73 MiB select distinct ptr.phenotype_id, cdr.disease_id, ( select id from pub2.object_type where cd = ?), cdr.reference_id, ptr.reference_id, cdr.ixn_id, cdr.chem_id, ( select id from pub2.object_type where cd = ?), cdr.mod_tm from pub2.chem_disease_reference cdr, pub2.phenotype_term_reference ptr where cdr.chem_id = ptr.term_id;-
SELECT DISTINCT ptr.phenotype_id, cdr.disease_id, ( select id from pub2.OBJECT_TYPE where cd = 'disease'), cdr.reference_id, ptr.reference_id, cdr.ixn_id, cdr.chem_id, ( select id from pub2.OBJECT_TYPE where cd = 'chem'), cdr.mod_tm FROM pub2.CHEM_DISEASE_REFERENCE cdr, pub2.PHENOTYPE_TERM_REFERENCE ptr WHERE cdr.chem_id = ptr.term_id;
Date: 2024-10-30 11:37:04 Duration: 0ms
30 5 158.30 MiB 29.02 MiB 34.07 MiB 31.66 MiB create index ix_term_enrich_enr_obj_type on pub2.term_enrichment using btree (enriched_object_type_id);-
CREATE INDEX ix_term_enrich_enr_obj_type ON pub2.term_enrichment USING btree (enriched_object_type_id);
Date: 2024-10-30 14:04:11 Duration: 1s45ms
-
CREATE INDEX ix_term_enrich_enr_obj_type ON pub2.term_enrichment USING btree (enriched_object_type_id);
Date: 2024-10-30 14:04:11 Duration: 0ms
31 5 244.32 MiB 43.77 MiB 53.84 MiB 48.86 MiB create index ix_chem_disease_reference_dis on pub2.chem_disease_reference using btree (disease_id);-
CREATE INDEX ix_chem_disease_reference_dis ON pub2.chem_disease_reference USING btree (disease_id);
Date: 2024-10-30 12:05:04 Duration: 2s783ms
-
CREATE INDEX ix_chem_disease_reference_dis ON pub2.chem_disease_reference USING btree (disease_id);
Date: 2024-10-30 12:05:04 Duration: 0ms
32 5 632.18 MiB 122.57 MiB 130.79 MiB 126.44 MiB create index ix_gene_disease_ind_chem_qty on pub2.gene_disease using btree (indirect_chem_qty) where (indirect_chem_qty > ?);-
CREATE INDEX ix_gene_disease_ind_chem_qty ON pub2.gene_disease USING btree (indirect_chem_qty) WHERE (indirect_chem_qty > 0);
Date: 2024-10-30 14:36:51 Duration: 7s483ms
-
CREATE INDEX ix_gene_disease_ind_chem_qty ON pub2.gene_disease USING btree (indirect_chem_qty) WHERE (indirect_chem_qty > 0);
Date: 2024-10-30 14:36:51 Duration: 0ms
33 5 244.31 MiB 46.55 MiB 50.73 MiB 48.86 MiB create index ix_chem_disease_ref_net_sc on pub2.chem_disease_reference using btree (network_score);-
CREATE INDEX ix_chem_disease_ref_net_sc ON pub2.chem_disease_reference USING btree (network_score);
Date: 2024-10-30 12:05:24 Duration: 4s973ms
-
CREATE INDEX ix_chem_disease_ref_net_sc ON pub2.chem_disease_reference USING btree (network_score);
Date: 2024-10-30 12:05:24 Duration: 0ms
34 5 632.30 MiB 120.98 MiB 128.91 MiB 126.46 MiB create index ix_gene_disease_network_score on pub2.gene_disease using btree (network_score);-
CREATE INDEX ix_gene_disease_network_score ON pub2.gene_disease USING btree (network_score);
Date: 2024-10-30 14:36:36 Duration: 14s949ms
-
CREATE INDEX ix_gene_disease_network_score ON pub2.gene_disease USING btree (network_score);
Date: 2024-10-30 14:36:36 Duration: 0ms
35 5 680.00 KiB 128.00 KiB 144.00 KiB 136.00 KiB create index ix_gene_disease_cur_ref_qty on pub2.gene_disease using btree (curated_reference_qty) where (curated_reference_qty > ?);-
CREATE INDEX ix_gene_disease_cur_ref_qty ON pub2.gene_disease USING btree (curated_reference_qty) WHERE (curated_reference_qty > 0);
Date: 2024-10-30 14:36:44 Duration: 0ms
36 5 221.04 MiB 43.13 MiB 45.31 MiB 44.21 MiB create index ix_term_enrich_corr_p_val on pub2.term_enrichment using btree (corrected_p_val);-
CREATE INDEX ix_term_enrich_corr_p_val ON pub2.term_enrichment USING btree (corrected_p_val);
Date: 2024-10-30 14:04:15 Duration: 4s523ms
-
CREATE INDEX ix_term_enrich_corr_p_val ON pub2.term_enrichment USING btree (corrected_p_val);
Date: 2024-10-30 14:04:15 Duration: 0ms
37 5 1.44 GiB 272.04 MiB 315.84 MiB 294.12 MiB create index ix_phenotype_term_ref_ids on pub2.phenotype_term_reference using btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);-
CREATE INDEX ix_phenotype_term_ref_ids ON pub2.phenotype_term_reference USING btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);
Date: 2024-10-30 12:04:56 Duration: 15s291ms
-
CREATE INDEX ix_phenotype_term_ref_ids ON pub2.phenotype_term_reference USING btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);
Date: 2024-10-30 12:04:55 Duration: 0ms
38 5 1.02 GiB 204.95 MiB 211.51 MiB 209.58 MiB create index ix_phenotype_term_ref_evidence_cd on pub2.phenotype_term_reference using btree (evidence_cd);-
CREATE INDEX ix_phenotype_term_ref_evidence_cd ON pub2.phenotype_term_reference USING btree (evidence_cd);
Date: 2024-10-30 12:03:59 Duration: 8s571ms
-
CREATE INDEX ix_phenotype_term_ref_evidence_cd ON pub2.phenotype_term_reference USING btree (evidence_cd);
Date: 2024-10-30 12:03:59 Duration: 0ms
39 5 1.02 GiB 201.41 MiB 215.86 MiB 209.58 MiB create index ix_phenotype_term_ref_taxon_id on pub2.phenotype_term_reference using btree (taxon_id);-
CREATE INDEX ix_phenotype_term_ref_taxon_id ON pub2.phenotype_term_reference USING btree (taxon_id);
Date: 2024-10-30 12:03:50 Duration: 7s245ms
-
CREATE INDEX ix_phenotype_term_ref_taxon_id ON pub2.phenotype_term_reference USING btree (taxon_id);
Date: 2024-10-30 12:03:50 Duration: 0ms
40 5 63.39 MiB 10.57 MiB 13.63 MiB 12.68 MiB create index ix_phenotype_term_term_id on pub2.phenotype_term using btree (term_id);-
CREATE INDEX ix_phenotype_term_term_id ON pub2.phenotype_term USING btree (term_id);
Date: 2024-10-30 14:36:54 Duration: 0ms
41 5 1.02 GiB 199.99 MiB 217.16 MiB 209.58 MiB create index ix_phenotype_term_ref_reference_id on pub2.phenotype_term_reference using btree (reference_id);-
CREATE INDEX ix_phenotype_term_ref_reference_id ON pub2.phenotype_term_reference USING btree (reference_id);
Date: 2024-10-30 12:03:43 Duration: 10s909ms
-
CREATE INDEX ix_phenotype_term_ref_reference_id ON pub2.phenotype_term_reference USING btree (reference_id);
Date: 2024-10-30 12:03:43 Duration: 0ms
42 5 244.32 MiB 45.17 MiB 51.81 MiB 48.86 MiB create index ix_chem_disease_ref_source_cd on pub2.chem_disease_reference using btree (source_cd);-
CREATE INDEX ix_chem_disease_ref_source_cd ON pub2.chem_disease_reference USING btree (source_cd);
Date: 2024-10-30 12:05:09 Duration: 1s915ms
-
CREATE INDEX ix_chem_disease_ref_source_cd ON pub2.chem_disease_reference USING btree (source_cd);
Date: 2024-10-30 12:05:09 Duration: 0ms
43 5 244.30 MiB 46.95 MiB 49.93 MiB 48.86 MiB create index ix_chem_disease_reference_gene on pub2.chem_disease_reference using btree (via_gene_id);-
CREATE INDEX ix_chem_disease_reference_gene ON pub2.chem_disease_reference USING btree (via_gene_id);
Date: 2024-10-30 12:05:14 Duration: 2s783ms
-
CREATE INDEX ix_chem_disease_reference_gene ON pub2.chem_disease_reference USING btree (via_gene_id);
Date: 2024-10-30 12:05:14 Duration: 0ms
44 5 1.02 GiB 179.41 MiB 226.97 MiB 209.58 MiB create index ix_phenotype_term_ref_term_id on pub2.phenotype_term_reference using btree (term_id);-
CREATE INDEX ix_phenotype_term_ref_term_id ON pub2.phenotype_term_reference USING btree (term_id);
Date: 2024-10-30 12:03:23 Duration: 11s461ms
-
CREATE INDEX ix_phenotype_term_ref_term_id ON pub2.phenotype_term_reference USING btree (term_id);
Date: 2024-10-30 12:03:23 Duration: 0ms
45 5 244.31 MiB 46.55 MiB 49.79 MiB 48.86 MiB create index ix_chem_disease_reference_ref on pub2.chem_disease_reference using btree (reference_id);-
CREATE INDEX ix_chem_disease_reference_ref ON pub2.chem_disease_reference USING btree (reference_id);
Date: 2024-10-30 12:05:07 Duration: 2s714ms
-
CREATE INDEX ix_chem_disease_reference_ref ON pub2.chem_disease_reference USING btree (reference_id);
Date: 2024-10-30 12:05:07 Duration: 0ms
46 5 221.03 MiB 42.11 MiB 45.69 MiB 44.21 MiB create index ix_term_enrich_raw_p_val on pub2.term_enrichment using btree (raw_p_val);-
CREATE INDEX ix_term_enrich_raw_p_val ON pub2.term_enrichment USING btree (raw_p_val);
Date: 2024-10-30 14:04:20 Duration: 4s674ms
-
CREATE INDEX ix_term_enrich_raw_p_val ON pub2.term_enrichment USING btree (raw_p_val);
Date: 2024-10-30 14:04:20 Duration: 0ms
47 5 158.31 MiB 28.93 MiB 32.82 MiB 31.66 MiB create index ix_term_enrich_tgt_match on pub2.term_enrichment using btree (target_match_qty);-
CREATE INDEX ix_term_enrich_tgt_match ON pub2.term_enrichment USING btree (target_match_qty);
Date: 2024-10-30 14:04:10 Duration: 1s712ms
-
CREATE INDEX ix_term_enrich_tgt_match ON pub2.term_enrichment USING btree (target_match_qty);
Date: 2024-10-30 14:04:10 Duration: 0ms
48 5 1.02 GiB 181.36 MiB 224.80 MiB 209.58 MiB create index ixn_phenotype_term_ref_phenotype_id on pub2.phenotype_term_reference using btree (phenotype_id);-
CREATE INDEX ixn_phenotype_term_ref_phenotype_id ON pub2.phenotype_term_reference USING btree (phenotype_id);
Date: 2024-10-30 12:03:12 Duration: 9s254ms
-
CREATE INDEX ixn_phenotype_term_ref_phenotype_id ON pub2.phenotype_term_reference USING btree (phenotype_id);
Date: 2024-10-30 12:03:12 Duration: 0ms
49 5 1.02 GiB 205.41 MiB 217.24 MiB 209.58 MiB create index ix_phenotype_term_ref_via_term_id on pub2.phenotype_term_reference using btree (via_term_id);-
CREATE INDEX ix_phenotype_term_ref_via_term_id ON pub2.phenotype_term_reference USING btree (via_term_id);
Date: 2024-10-30 12:04:40 Duration: 11s15ms
-
CREATE INDEX ix_phenotype_term_ref_via_term_id ON pub2.phenotype_term_reference USING btree (via_term_id);
Date: 2024-10-30 12:04:40 Duration: 0ms
50 5 158.31 MiB 30.78 MiB 32.23 MiB 31.66 MiB create index ix_term_enrich_obj_type on pub2.term_enrichment using btree (object_type_id);-
CREATE INDEX ix_term_enrich_obj_type ON pub2.term_enrichment USING btree (object_type_id);
Date: 2024-10-30 14:04:08 Duration: 1s63ms
-
CREATE INDEX ix_term_enrich_obj_type ON pub2.term_enrichment USING btree (object_type_id);
Date: 2024-10-30 14:04:08 Duration: 0ms
51 5 244.32 MiB 48.40 MiB 49.63 MiB 48.86 MiB create index ix_chem_disease_ref_src_db on pub2.chem_disease_reference using btree (source_acc_db_id);-
CREATE INDEX ix_chem_disease_ref_src_db ON pub2.chem_disease_reference USING btree (source_acc_db_id);
Date: 2024-10-30 12:05:11 Duration: 1s911ms
-
CREATE INDEX ix_chem_disease_ref_src_db ON pub2.chem_disease_reference USING btree (source_acc_db_id);
Date: 2024-10-30 12:05:11 Duration: 0ms
52 5 244.33 MiB 45.64 MiB 50.03 MiB 48.87 MiB create index ix_chem_disease_reference_ixn on pub2.chem_disease_reference using btree (ixn_id);-
CREATE INDEX ix_chem_disease_reference_ixn ON pub2.chem_disease_reference USING btree (ixn_id);
Date: 2024-10-30 12:05:17 Duration: 2s804ms
-
CREATE INDEX ix_chem_disease_reference_ixn ON pub2.chem_disease_reference USING btree (ixn_id);
Date: 2024-10-30 12:05:17 Duration: 0ms
53 5 1.02 GiB 205.81 MiB 214.25 MiB 209.58 MiB create index ix_phenotype_term_reference_ixn_id on pub2.phenotype_term_reference using btree (ixn_id);-
CREATE INDEX ix_phenotype_term_reference_ixn_id ON pub2.phenotype_term_reference USING btree (ixn_id);
Date: 2024-10-30 12:04:29 Duration: 10s637ms
-
CREATE INDEX ix_phenotype_term_reference_ixn_id ON pub2.phenotype_term_reference USING btree (ixn_id);
Date: 2024-10-30 12:04:29 Duration: 0ms
54 5 1.02 GiB 208.04 MiB 210.71 MiB 209.58 MiB create index ix_phenotype_term_reference_source_acc_db_id on pub2.phenotype_term_reference using btree (source_acc_db_id);-
CREATE INDEX ix_phenotype_term_reference_source_acc_db_id ON pub2.phenotype_term_reference USING btree (source_acc_db_id);
Date: 2024-10-30 12:04:08 Duration: 9s125ms
-
CREATE INDEX ix_phenotype_term_reference_source_acc_db_id ON pub2.phenotype_term_reference USING btree (source_acc_db_id);
Date: 2024-10-30 12:04:08 Duration: 0ms
55 5 244.31 MiB 47.89 MiB 49.56 MiB 48.86 MiB create index ix_chem_disease_ref_mod_tm on pub2.chem_disease_reference using btree (mod_tm);-
CREATE INDEX ix_chem_disease_ref_mod_tm ON pub2.chem_disease_reference USING btree (mod_tm);
Date: 2024-10-30 12:05:19 Duration: 2s756ms
-
CREATE INDEX ix_chem_disease_ref_mod_tm ON pub2.chem_disease_reference USING btree (mod_tm);
Date: 2024-10-30 12:05:19 Duration: 0ms
56 5 1.02 GiB 205.03 MiB 215.08 MiB 209.58 MiB create index ix_phenotype_term_reference_term_reference_id on pub2.phenotype_term_reference using btree (term_reference_id);-
CREATE INDEX ix_phenotype_term_reference_term_reference_id ON pub2.phenotype_term_reference USING btree (term_reference_id);
Date: 2024-10-30 12:04:19 Duration: 10s877ms
-
CREATE INDEX ix_phenotype_term_reference_term_reference_id ON pub2.phenotype_term_reference USING btree (term_reference_id);
Date: 2024-10-30 12:04:19 Duration: 0ms
57 5 632.32 MiB 119.09 MiB 130.80 MiB 126.46 MiB create index ix_gene_disease_disease on pub2.gene_disease using btree (disease_id);-
CREATE INDEX ix_gene_disease_disease ON pub2.gene_disease USING btree (disease_id);
Date: 2024-10-30 14:36:43 Duration: 7s324ms
-
CREATE INDEX ix_gene_disease_disease ON pub2.gene_disease USING btree (disease_id);
Date: 2024-10-30 14:36:43 Duration: 0ms
58 5 40.00 KiB 8.00 KiB 8.00 KiB 8.00 KiB create index ix_gene_disease_exp_ref_qty on pub2.gene_disease using btree (exposure_reference_qty) where (exposure_reference_qty > ?);-
CREATE INDEX ix_gene_disease_exp_ref_qty ON pub2.gene_disease USING btree (exposure_reference_qty) WHERE (exposure_reference_qty > 0);
Date: 2024-10-30 14:36:52 Duration: 0ms
59 5 63.39 MiB 10.62 MiB 14.73 MiB 12.68 MiB create index ix_phenotype_term_phenotype_id on pub2.phenotype_term using btree (phenotype_id);-
CREATE INDEX ix_phenotype_term_phenotype_id ON pub2.phenotype_term USING btree (phenotype_id);
Date: 2024-10-30 14:36:53 Duration: 0ms
60 5 1.02 GiB 200.66 MiB 217.71 MiB 209.59 MiB create index ix_phenotype_term_ref_object_type_id on pub2.phenotype_term_reference using btree (term_object_type_id);-
CREATE INDEX ix_phenotype_term_ref_object_type_id ON pub2.phenotype_term_reference USING btree (term_object_type_id);
Date: 2024-10-30 12:03:32 Duration: 8s504ms
-
CREATE INDEX ix_phenotype_term_ref_object_type_id ON pub2.phenotype_term_reference USING btree (term_object_type_id);
Date: 2024-10-30 12:03:32 Duration: 0ms
61 4 63.36 MiB 15.56 MiB 15.98 MiB 15.84 MiB create index ix_chem_disease_ind_gene_qty on pub2.chem_disease using btree (indirect_gene_qty) where (indirect_gene_qty > ?);-
CREATE INDEX ix_chem_disease_ind_gene_qty ON pub2.chem_disease USING btree (indirect_gene_qty) WHERE (indirect_gene_qty > 0);
Date: 2024-10-30 14:36:59 Duration: 0ms
62 4 13.48 MiB 8.00 KiB 6.75 MiB 3.37 MiB alter table pub2.phenotype_term_axn add constraint phenotype_term_axn_pk primary key (phenotype_id, term_id, action_type_nm, action_degree_type_nm);-
ALTER TABLE pub2.phenotype_term_axn ADD CONSTRAINT phenotype_term_axn_pk PRIMARY KEY (phenotype_id, term_id, action_type_nm, action_degree_type_nm);
Date: 2024-10-30 14:36:55 Duration: 0ms
63 4 32.00 KiB 8.00 KiB 8.00 KiB 8.00 KiB create index ix_chem_disease_exp_ref_qty on pub2.chem_disease using btree (exposure_reference_qty) where (exposure_reference_qty > ?);-
CREATE INDEX ix_chem_disease_exp_ref_qty ON pub2.chem_disease USING btree (exposure_reference_qty) WHERE (exposure_reference_qty > 0);
Date: 2024-10-30 14:36:59 Duration: 0ms
64 4 64.25 MiB 13.44 MiB 17.20 MiB 16.06 MiB create index ix_chem_disease_disease on pub2.chem_disease using btree (disease_id);-
CREATE INDEX ix_chem_disease_disease ON pub2.chem_disease USING btree (disease_id);
Date: 2024-10-30 14:36:58 Duration: 0ms
65 4 64.25 MiB 15.25 MiB 16.84 MiB 16.06 MiB create index ix_chem_disease_network_score on pub2.chem_disease using btree (network_score);-
CREATE INDEX ix_chem_disease_network_score ON pub2.chem_disease USING btree (network_score);
Date: 2024-10-30 14:36:57 Duration: 1s583ms
-
CREATE INDEX ix_chem_disease_network_score ON pub2.chem_disease USING btree (network_score);
Date: 2024-10-30 14:36:57 Duration: 0ms
66 4 1.99 MiB 496.00 KiB 528.00 KiB 510.00 KiB create index ix_chem_disease_cur_ref_qty on pub2.chem_disease using btree (curated_reference_qty) where (curated_reference_qty > ?);-
CREATE INDEX ix_chem_disease_cur_ref_qty ON pub2.chem_disease USING btree (curated_reference_qty) WHERE (curated_reference_qty > 0);
Date: 2024-10-30 14:36:58 Duration: 0ms
67 2 6.10 MiB 1.91 MiB 4.19 MiB 3.05 MiB create index ix_phenotype_term_axn_phenotype_id on pub2.phenotype_term_axn using btree (phenotype_id);-
CREATE INDEX ix_phenotype_term_axn_phenotype_id ON pub2.phenotype_term_axn USING btree (phenotype_id);
Date: 2024-10-30 14:36:55 Duration: 0ms
68 2 6.11 MiB 2.70 MiB 3.41 MiB 3.05 MiB create index ix_phenotype_term_axn_term_id on pub2.phenotype_term_axn using btree (term_id);-
CREATE INDEX ix_phenotype_term_axn_term_id ON pub2.phenotype_term_axn USING btree (term_id);
Date: 2024-10-30 14:36:55 Duration: 0ms
Queries generating the largest temporary files
Rank Size Query 1 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
2 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
3 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
4 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
5 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
6 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
7 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
8 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
9 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
10 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
11 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
12 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
13 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
14 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
15 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
16 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:11 ]
17 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:12 ]
18 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:12 ]
19 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:12 ]
20 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-10-30 10:10:12 ]
-
Vacuums
Vacuums / Analyzes Distribution
Key values
- 227.53 sec Highest CPU-cost vacuum
Table pub2.gene_disease
Database ctdprd51 - 2024-10-30 15:11:33 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 227.53 sec Highest CPU-cost vacuum
Table pub2.gene_disease
Database ctdprd51 - 2024-10-30 15:11:33 Date
Analyzes per table
Key values
- pubc.log_query (28) Main table analyzed (database ctdprd51)
- 72 analyzes Total
Table Number of analyzes ctdprd51.pubc.log_query 28 ctdprd51.pg_catalog.pg_class 3 ctdprd51.pg_catalog.pg_attribute 2 ctdprd51.pub2.reference 2 ctdprd51.pub2.term 2 ctdprd51.pub2.phenotype_term 2 ctdprd51.pub2.exp_receptor_gender 1 ctdprd51.pub2.geographic_region 1 ctdprd51.pub2.chem_disease 1 ctdprd51.load.data_load 1 ctdprd51.pub2.exp_outcome 1 ctdprd51.pub2.slim_term_mapping 1 ctdprd51.pub1.term_set_enrichment_agent 1 ctdprd51.pub2.gene_gene_ref_throughput 1 ctdprd51.pg_catalog.pg_depend 1 ctdprd51.pub2.exp_event_assay_method 1 ctdprd51.pub2.ixn 1 ctdprd51.pg_catalog.pg_index 1 ctdprd51.pub2.country 1 ctdprd51.pub2.gene_disease 1 ctdprd51.pub2.gene_chem_ref_gene_form 1 ctdprd51.pub2.medium 1 ctdprd51.pub2.exp_event_location 1 ctdprd51.pub2.gene_gene 1 ctdprd51.pub2.dag_node 1 ctdprd51.pub2.exp_study_factor 1 ctdprd51.pg_catalog.pg_type 1 ctdprd51.pub2.exp_stressor 1 ctdprd51.pub2.exp_receptor 1 ctdprd51.pub2.exposure 1 ctdprd51.pub2.term_reference 1 ctdprd51.pub2.gene_gene_reference 1 ctdprd51.pub2.exp_event 1 ctdprd51.pub2.exp_anatomy 1 ctdprd51.pub2.exp_receptor_tobacco_use 1 ctdprd51.pub2.exp_stressor_stressor_src 1 ctdprd51.pub2.reference_exp 1 ctdprd51.pub2.exp_event_project 1 ctdprd51.pub2.exp_receptor_race 1 Total 72 Vacuums per table
Key values
- pubc.log_query (8) Main table vacuumed on database ctdprd51
- 48 vacuums Total
Index Buffer usage Skipped WAL usage Table Vacuums scans hits misses dirtied pins frozen records full page bytes ctdprd51.pubc.log_query 8 7 7,430 0 1,047 0 132 1,437 189 1,400,504 ctdprd51.pg_catalog.pg_statistic 3 3 1,801 0 299 0 70 816 224 1,023,354 ctdprd51.pub2.term 2 2 1,488,135 0 129,629 0 77 833,263 311,560 1,430,660,531 ctdprd51.pg_toast.pg_toast_2619 2 2 8,117 0 3,720 0 20,189 7,048 2,159 1,003,337 ctdprd51.pub2.reference 2 2 544,755 0 53,006 0 0 385,957 47,009 189,827,784 ctdprd51.pub2.phenotype_term 2 2 949,527 0 126,175 0 0 761,918 103,308 266,184,229 ctdprd51.pg_catalog.pg_class 2 2 593 0 76 0 0 309 71 399,981 ctdprd51.pub2.gene_gene 1 0 12,047 0 5 0 0 5,972 2 367,443 ctdprd51.pub2.exp_event_location 1 0 3,436 0 3 0 0 1,667 1 106,772 ctdprd51.pub2.dag_node 1 1 318,837 0 590 0 0 273,139 582 92,142,381 ctdprd51.pub2.exp_study_factor 1 0 113 0 15 0 0 11 2 13,004 ctdprd51.pub2.exp_stressor 1 0 6,097 0 3 0 0 3,019 1 186,540 ctdprd51.pg_toast.pg_toast_6503074 1 1 90 0 3 0 0 49 3 11,640 ctdprd51.pub2.gene_disease 1 1 2,861,320 0 695,374 0 0 1,598,882 670,880 2,104,787,705 ctdprd51.pub2.gene_chem_ref_gene_form 1 0 32,466 0 5 0 0 16,183 2 968,316 ctdprd51.pub2.gene_gene_reference 1 0 30,348 0 3 0 0 15,115 1 900,204 ctdprd51.pub2.exp_event 1 0 12,443 0 3 0 0 6,143 1 370,856 ctdprd51.pub2.exp_anatomy 1 0 126 0 3 0 0 34 1 10,425 ctdprd51.pub2.exp_receptor_tobacco_use 1 0 1,194 0 3 0 0 562 1 41,577 ctdprd51.pub2.exp_stressor_stressor_src 1 0 2,603 0 4 0 0 1,273 1 83,526 ctdprd51.pub2.reference_exp 1 0 328 0 4 0 0 127 2 22,368 ctdprd51.pub2.exp_event_project 1 0 2,034 0 3 0 0 995 1 67,124 ctdprd51.pub2.exp_receptor_race 1 0 1,328 0 3 0 0 629 1 45,530 ctdprd51.pub2.exposure 1 0 3,676 0 3 0 0 1,785 1 113,734 ctdprd51.pub2.exp_receptor 1 0 7,371 0 3 0 0 3,640 1 223,179 ctdprd51.pub2.term_reference 1 0 37,135 0 5 0 0 18,513 2 1,105,198 ctdprd51.pub2.chem_disease 1 1 265,791 0 9,724 0 0 162,430 9,712 117,566,124 ctdprd51.pg_catalog.pg_attribute 1 1 495 0 93 0 70 216 86 441,023 ctdprd51.pub2.exp_outcome 1 0 597 0 4 0 0 241 2 27,666 ctdprd51.pub2.exp_receptor_gender 1 0 2,696 0 3 0 0 1,333 1 87,066 ctdprd51.pub2.ixn 1 1 1,473,740 0 89 0 0 984,356 220 68,342,801 ctdprd51.pub2.slim_term_mapping 1 0 600 0 4 0 0 262 2 30,873 ctdprd51.pub2.gene_gene_ref_throughput 1 0 14,583 0 3 0 0 7,252 1 436,287 ctdprd51.pub2.exp_event_assay_method 1 0 4,825 0 4 0 0 2,367 2 153,120 Total 48 26 8,096,677 170,231 1,019,911 0 20,538 5,096,943 1,146,032 4,279,152,202 Tuples removed per table
Key values
- pub2.gene_disease (33085849) Main table with removed tuples on database ctdprd51
- 60449144 tuples Total removed
Index Tuples Pages Table Vacuums scans removed remain not yet removable removed remain ctdprd51.pub2.gene_disease 1 1 33,085,849 33,085,849 0 0 486,557 ctdprd51.pub2.phenotype_term 2 2 19,918,705 6,631,770 0 0 248,137 ctdprd51.pub2.chem_disease 1 1 3,361,229 3,361,229 0 0 49,380 ctdprd51.pub2.term 2 2 2,098,676 4,185,652 0 0 321,588 ctdprd51.pub2.dag_node 1 1 1,717,615 1,710,302 0 0 82,454 ctdprd51.pub2.reference 2 2 201,485 396,014 0 0 163,193 ctdprd51.pub2.ixn 1 1 56,058 2,284,244 0 0 539,165 ctdprd51.pg_toast.pg_toast_2619 2 2 7,795 39,227 54 0 25,184 ctdprd51.pg_catalog.pg_statistic 3 3 1,052 6,685 31 0 870 ctdprd51.pg_catalog.pg_attribute 1 1 336 9,496 0 0 236 ctdprd51.pg_catalog.pg_class 2 2 222 3,552 0 0 122 ctdprd51.pg_toast.pg_toast_6503074 1 1 70 69 0 0 21 ctdprd51.pubc.log_query 8 7 52 92,093 1 0 3,737 ctdprd51.pub2.gene_gene 1 0 0 1,104,464 0 0 5,971 ctdprd51.pub2.exp_event_location 1 0 0 250,908 0 0 1,666 ctdprd51.pub2.exp_study_factor 1 0 0 1,634 0 0 10 ctdprd51.pub2.exp_stressor 1 0 0 209,663 0 0 3,018 ctdprd51.pub2.gene_chem_ref_gene_form 1 0 0 2,986,633 0 0 16,182 ctdprd51.pub2.gene_gene_reference 1 0 0 1,387,581 0 0 15,114 ctdprd51.pub2.exp_event 1 0 0 208,874 0 0 6,142 ctdprd51.pub2.exp_anatomy 1 0 0 3,852 0 0 33 ctdprd51.pub2.exp_receptor_tobacco_use 1 0 0 79,549 0 0 561 ctdprd51.pub2.exp_stressor_stressor_src 1 0 0 287,439 0 0 1,272 ctdprd51.pub2.reference_exp 1 0 0 3,477 0 0 126 ctdprd51.pub2.exp_event_project 1 0 0 95,552 0 0 994 ctdprd51.pub2.exp_receptor_race 1 0 0 96,788 0 0 628 ctdprd51.pub2.exposure 1 0 0 216,596 0 0 1,784 ctdprd51.pub2.exp_receptor 1 0 0 192,438 0 0 3,639 ctdprd51.pub2.term_reference 1 0 0 3,424,574 0 0 18,512 ctdprd51.pub2.exp_outcome 1 0 0 15,078 0 0 240 ctdprd51.pub2.exp_receptor_gender 1 0 0 190,294 0 0 1,332 ctdprd51.pub2.slim_term_mapping 1 0 0 32,805 0 0 261 ctdprd51.pub2.gene_gene_ref_throughput 1 0 0 1,394,991 0 0 7,251 ctdprd51.pub2.exp_event_assay_method 1 0 0 237,388 0 0 2,366 Total 48 26 60,449,144 64,226,760 86 0 2,007,746 Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Pages removed per tables
NO DATASET
Table Number of vacuums Index scans Tuples removed Pages removed ctdprd51.pub2.gene_gene 1 0 0 0 ctdprd51.pub2.exp_event_location 1 0 0 0 ctdprd51.pub2.dag_node 1 1 1717615 0 ctdprd51.pub2.exp_study_factor 1 0 0 0 ctdprd51.pub2.term 2 2 2098676 0 ctdprd51.pub2.exp_stressor 1 0 0 0 ctdprd51.pg_toast.pg_toast_6503074 1 1 70 0 ctdprd51.pub2.gene_disease 1 1 33085849 0 ctdprd51.pg_toast.pg_toast_2619 2 2 7795 0 ctdprd51.pub2.gene_chem_ref_gene_form 1 0 0 0 ctdprd51.pub2.reference 2 2 201485 0 ctdprd51.pub2.gene_gene_reference 1 0 0 0 ctdprd51.pub2.exp_event 1 0 0 0 ctdprd51.pubc.log_query 8 7 52 0 ctdprd51.pub2.exp_anatomy 1 0 0 0 ctdprd51.pub2.exp_receptor_tobacco_use 1 0 0 0 ctdprd51.pub2.exp_stressor_stressor_src 1 0 0 0 ctdprd51.pub2.reference_exp 1 0 0 0 ctdprd51.pub2.exp_event_project 1 0 0 0 ctdprd51.pub2.exp_receptor_race 1 0 0 0 ctdprd51.pub2.exposure 1 0 0 0 ctdprd51.pub2.exp_receptor 1 0 0 0 ctdprd51.pub2.phenotype_term 2 2 19918705 0 ctdprd51.pub2.term_reference 1 0 0 0 ctdprd51.pub2.chem_disease 1 1 3361229 0 ctdprd51.pg_catalog.pg_attribute 1 1 336 0 ctdprd51.pub2.exp_outcome 1 0 0 0 ctdprd51.pub2.exp_receptor_gender 1 0 0 0 ctdprd51.pub2.ixn 1 1 56058 0 ctdprd51.pub2.slim_term_mapping 1 0 0 0 ctdprd51.pg_catalog.pg_class 2 2 222 0 ctdprd51.pg_catalog.pg_statistic 3 3 1052 0 ctdprd51.pub2.gene_gene_ref_throughput 1 0 0 0 ctdprd51.pub2.exp_event_assay_method 1 0 0 0 Total 48 26 60,449,144 0 Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Oct 30 00 0 4 01 0 3 02 0 3 03 0 2 04 0 4 05 0 1 06 0 2 07 0 2 08 0 1 09 0 1 10 0 1 11 0 0 12 0 2 13 0 1 14 0 24 15 0 7 16 0 3 17 0 0 18 0 6 19 0 0 20 0 1 21 0 3 22 0 1 23 0 0 - 227.53 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- ShareLock Main Lock Type
- 1 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query 1 1 1s 1s 1s 1s create index ftsix_term_label_nm on pub2.term_label using gin (nm_fts);-
CREATE INDEX ftsix_term_label_nm ON pub2.TERM_LABEL USING gin (nm_fts);
Date: 2024-10-30 18:01:48 Bind query: yes
-
CREATE INDEX ftsix_term_label_nm ON pub2.TERM_LABEL USING gin (nm_fts);
Date: 2024-10-30 18:01:31
Queries that waited the most
Rank Wait time Query 1 1s CREATE INDEX ftsix_term_label_nm ON pub2.TERM_LABEL USING gin (nm_fts);[ Date: 2024-10-30 18:01:31 ]
-
Queries
Queries by type
Key values
- 730 Total read queries
- 119 Total write queries
Queries by database
Key values
- unknown Main database
- 555 Requests
- 12h50m44s (unknown)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 993 Requests
User Request type Count Duration edit Total 3 18s677ms insert 1 11s419ms select 2 7s257ms editeu Total 2 5s514ms select 2 5s514ms load Total 36 23m16s others 1 2s591ms select 35 23m13s postgres Total 16 6m54s copy to 16 6m54s pub2 Total 6 12m56s ddl 1 4s425ms insert 2 12m40s select 3 11s646ms pubeu Total 518 3h59m27s cte 3 10s190ms select 515 3h59m16s qaeu Total 10 28s168ms cte 2 6s732ms select 8 21s435ms unknown Total 993 14h39m51s copy to 61 7m24s cte 5 7s433ms ddl 52 39m20s insert 28 44m49s others 23 52m24s select 815 11h43m8s update 9 32m38s zbx_monitor Total 2 5s183ms select 2 5s183ms Duration by user
Key values
- 14h39m51s (unknown) Main time consuming user
User Request type Count Duration edit Total 3 18s677ms insert 1 11s419ms select 2 7s257ms editeu Total 2 5s514ms select 2 5s514ms load Total 36 23m16s others 1 2s591ms select 35 23m13s postgres Total 16 6m54s copy to 16 6m54s pub2 Total 6 12m56s ddl 1 4s425ms insert 2 12m40s select 3 11s646ms pubeu Total 518 3h59m27s cte 3 10s190ms select 515 3h59m16s qaeu Total 10 28s168ms cte 2 6s732ms select 8 21s435ms unknown Total 993 14h39m51s copy to 61 7m24s cte 5 7s433ms ddl 52 39m20s insert 28 44m49s others 23 52m24s select 815 11h43m8s update 9 32m38s zbx_monitor Total 2 5s183ms select 2 5s183ms Queries by host
Key values
- unknown Main host
- 1,586 Requests
- 19h23m24s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 843 Requests
- 15h56m22s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2024-10-30 04:45:13 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 738 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 2h1m31s select pub2.maint_term_derive_data ();[ Date: 2024-10-30 20:52:25 - Bind query: yes ]
2 1h36m38s select pub2.maint_gene_chem_ref_gene_form_refresh ();[ Date: 2024-10-30 16:49:24 - Bind query: yes ]
3 1h5m45s SELECT maint_term_derive_nm_fts ();[ Date: 2024-10-30 17:58:05 - Bind query: yes ]
4 46m46s VACUUM FULL ANALYZE;[ Date: 2024-10-30 18:50:31 - Bind query: yes ]
5 42m6s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.GENE_GO_ANNOT gga, pub2.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');[ Date: 2024-10-30 11:33:05 - Bind query: yes ]
6 36m31s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub2.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');[ Date: 2024-10-30 10:50:53 - Bind query: yes ]
7 34m48s SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;[ Date: 2024-10-30 09:21:15 - Bind query: yes ]
8 33m45s select pub2.maint_cached_value_refresh_data_metrics ();[ Date: 2024-10-30 21:36:28 - Bind query: yes ]
9 23m47s update pub2.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.REFERENCE r where has_exposures = true));[ Date: 2024-10-30 15:07:18 - Bind query: yes ]
10 18m25s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2024-10-30 00:18:27 ]
11 18m12s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-10-30 02:49:25 - Bind query: yes ]
12 17m46s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-10-30 04:16:57 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
13 17m42s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-10-30 02:48:47 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
14 17m34s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-10-30 02:22:22 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
15 17m34s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-10-30 02:41:04 - Bind query: yes ]
16 17m33s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-10-30 02:23:22 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
17 17m29s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-10-30 02:25:51 - Bind query: yes ]
18 17m29s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-10-30 02:48:43 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
19 17m29s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-10-30 02:23:08 - Bind query: yes ]
20 17m28s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-10-30 02:24:04 - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 4h49m5s 33 1s193ms 18m12s 8m45s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Oct 30 02 16 4h5m45s 15m21s 03 1 17m26s 17m26s 04 1 17m46s 17m46s 06 1 1s528ms 1s528ms 08 12 6m44s 33s691ms 15 1 6s195ms 6s195ms 22 1 1m14s 1m14s [ User: pubeu - Total duration: 2h26m - Times executed: 14 ]
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-10-30 02:49:25 Duration: 18m12s Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-10-30 04:16:57 Duration: 17m46s Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-10-30 02:48:47 Duration: 17m42s Database: ctdprd51 User: pubeu Bind query: yes
2 2h1m31s 1 2h1m31s 2h1m31s 2h1m31s select pub2.maint_term_derive_data ();Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Oct 30 20 1 2h1m31s 2h1m31s -
select pub2.maint_term_derive_data ();
Date: 2024-10-30 20:52:25 Duration: 2h1m31s Bind query: yes
3 1h36m38s 1 1h36m38s 1h36m38s 1h36m38s select pub2.maint_gene_chem_ref_gene_form_refresh ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Oct 30 16 1 1h36m38s 1h36m38s -
select pub2.maint_gene_chem_ref_gene_form_refresh ();
Date: 2024-10-30 16:49:24 Duration: 1h36m38s Bind query: yes
4 1h5m45s 1 1h5m45s 1h5m45s 1h5m45s select maint_term_derive_nm_fts ();Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Oct 30 17 1 1h5m45s 1h5m45s -
SELECT maint_term_derive_nm_fts ();
Date: 2024-10-30 17:58:05 Duration: 1h5m45s Bind query: yes
5 46m46s 1 46m46s 46m46s 46m46s vacuum full analyze;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Oct 30 18 1 46m46s 46m46s -
VACUUM FULL ANALYZE;
Date: 2024-10-30 18:50:31 Duration: 46m46s Bind query: yes
-
VACUUM FULL ANALYZE;
Date: 2024-10-30 18:03:45 Duration: 0ms
6 42m6s 1 42m6s 42m6s 42m6s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.gene_go_annot gga, pub2.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Oct 30 11 1 42m6s 42m6s -
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.GENE_GO_ANNOT gga, pub2.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 11:33:05 Duration: 42m6s Bind query: yes
7 36m31s 1 36m31s 36m31s 36m31s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.object_type where cd = ?), ptr.term_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.phenotype_term_reference ptr, pub2.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Oct 30 10 1 36m31s 36m31s -
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub2.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 10:50:53 Duration: 36m31s Bind query: yes
8 34m48s 1 34m48s 34m48s 34m48s select i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) from edit.ixn i, edit.reference_ixn r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in (...) order by i.id asc;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Oct 30 09 1 34m48s 34m48s -
SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;
Date: 2024-10-30 09:21:15 Duration: 34m48s Bind query: yes
9 33m45s 1 33m45s 33m45s 33m45s select pub2.maint_cached_value_refresh_data_metrics ();Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Oct 30 21 1 33m45s 33m45s -
select pub2.maint_cached_value_refresh_data_metrics ();
Date: 2024-10-30 21:36:28 Duration: 33m45s Bind query: yes
-
select pub2.maint_cached_value_refresh_data_metrics ();
Date: 2024-10-30 21:32:10 Duration: 0ms
10 23m47s 1 23m47s 23m47s 23m47s update pub2.gene_disease gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.gene_disease_reference gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.reference r where has_exposures = true));Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Oct 30 15 1 23m47s 23m47s -
update pub2.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.REFERENCE r where has_exposures = true));
Date: 2024-10-30 15:07:18 Duration: 23m47s Bind query: yes
11 23m36s 33 1s374ms 6m30s 42s926ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Oct 30 09 6 1m7s 11s256ms 11 3 7m43s 2m34s 12 3 6m54s 2m18s 13 15 4m12s 16s857ms 14 6 3m38s 36s367ms [ User: load - Total duration: 13m5s - Times executed: 17 ]
[ Application: pg_bulkload - Total duration: 13m5s - Times executed: 17 ]
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-10-30 11:44:24 Duration: 6m30s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-10-30 12:12:16 Duration: 5m15s Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.TERM_ENRICHMENT_AGENT,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.log,parse-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.DUPE}');
Date: 2024-10-30 14:01:24 Duration: 2m59s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
12 18m25s 1 18m25s 18m25s 18m25s select maint_query_logs_archive ();Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Oct 30 00 1 18m25s 18m25s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-10-30 00:18:27 Duration: 18m25s
13 12m48s 1 12m48s 12m48s 12m48s alter table pub2.term_enrichment_agent add constraint term_enr_agent_term_enr_fk foreign key (term_id, enriched_term_id) references term_enrichment (term_id, enriched_term_id);Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Oct 30 14 1 12m48s 12m48s -
ALTER TABLE pub2.term_enrichment_agent ADD CONSTRAINT term_enr_agent_term_enr_fk FOREIGN KEY (term_id, enriched_term_id) REFERENCES term_enrichment (term_id, enriched_term_id);
Date: 2024-10-30 14:17:08 Duration: 12m48s Bind query: yes
14 11m38s 1 11m38s 11m38s 11m38s select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gi.id gene_id from term gi where gi.object_type_id = ? and upper(gi.nm) like ?) intersect ( select ai.gene_id from dag_path pi inner join gene_go_annot ai on pi.descendant_object_id = ai.go_term_id inner join term_label li on li.term_id = pi.ancestor_object_id where upper(li.nm) like ? and li.object_type_id = ?) intersect ( select tp.term_id from term_pathway tp where tp.object_type_id = ? and upper(tp.pathway_acc_txt) = ? and tp.pathway_acc_db_cd = ?))) and gcr.chem_id = any (array ( select dp.descendant_object_id from dag_path dp inner join term_label l on l.term_id = dp.ancestor_object_id where upper(l.nm) like ? and l.object_type_id = ?)) and gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by i.sort_txt, g.nm_sort, c.nm_sort limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Oct 30 05 1 11m38s 11m38s [ User: pubeu - Total duration: 11m38s - Times executed: 1 ]
-
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'gene'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Name */ gi.id gene_id FROM term gi WHERE gi.object_type_id = 4 AND UPPER(gi.nm) LIKE 'TNFRSF1A') INTERSECT ( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE 'ALL' AND li.object_type_id = 5) INTERSECT ( SELECT /* IQH.getMasterPathwayWhereEquals.Acc */ tp.term_id FROM term_pathway tp WHERE tp.object_type_id = 4 AND UPPER(tp.pathway_acc_txt) = 'HSA04668' AND tp.pathway_acc_db_cd = 'KEGG'))) AND gcr.chem_id = ANY (ARRAY ( SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE 'TRIS(1,3-DICHLORO-2-PROPYL)PHOSPHATE' AND l.object_type_id = 2)) AND gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY i.sort_txt, g.nm_sort, c.nm_sort LIMIT 50;
Date: 2024-10-30 05:08:32 Duration: 11m38s Database: ctdprd51 User: pubeu Bind query: yes
15 11m21s 19 2s127ms 8m57s 35s870ms select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Oct 30 09 8 9m47s 1m13s 10 11 1m34s 8s562ms [ User: load - Total duration: 8m57s - Times executed: 1 ]
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 09:33:04 Duration: 8m57s Database: ctdprd51 User: load Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 10:01:07 Duration: 37s336ms Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 10:06:00 Duration: 37s250ms Bind query: yes
16 9m7s 1 9m7s 9m7s 9m7s select pub2.maint_phenotype_term_derive_data ();Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Oct 30 21 1 9m7s 9m7s -
select pub2.maint_phenotype_term_derive_data ();
Date: 2024-10-30 21:02:43 Duration: 9m7s Bind query: yes
17 4m 46 1s6ms 7s60ms 5s222ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Oct 30 00 3 11s455ms 3s818ms 01 3 15s995ms 5s331ms 02 8 44s43ms 5s505ms 04 5 26s858ms 5s371ms 05 2 6s200ms 3s100ms 06 2 10s384ms 5s192ms 08 2 11s36ms 5s518ms 09 2 11s61ms 5s530ms 11 1 7s60ms 7s60ms 13 2 12s99ms 6s49ms 15 1 1s76ms 1s76ms 17 2 11s449ms 5s724ms 18 9 54s667ms 6s74ms 21 1 1s36ms 1s36ms 22 2 10s713ms 5s356ms 23 1 5s107ms 5s107ms [ User: pubeu - Total duration: 1m24s - Times executed: 17 ]
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1262309' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-10-30 11:56:40 Duration: 7s60ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1343235' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-10-30 18:23:57 Duration: 7s37ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1263198' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-10-30 13:24:17 Duration: 6s166ms Database: ctdprd51 User: pubeu Bind query: yes
18 3m45s 1 3m45s 3m45s 3m45s select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.chem_id = any (array ( select dp.descendant_object_id from dag_path dp inner join term t on t.id = dp.ancestor_object_id where upper(t.nm) like ? and t.object_type_id = ?)) and exists ( select ? from gene_chem_reference_axn gcra where gcr.id = gcra.gene_chem_reference_id and gcra.action_type_nm in ( select ac.nm from action_type ap, action_type ac where ac.subset_left_no between ap.subset_left_no and ap.subset_right_no and (ap.nm = ?)) and (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Oct 30 07 1 3m45s 3m45s [ User: pubeu - Total duration: 3m45s - Times executed: 1 ]
-
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'gene'))) AND gcr.chem_id = ANY (ARRAY ( SELECT /* CIQH.getIxnChemWhereEquals.Name */ dp.descendant_object_id FROM dag_path dp INNER JOIN term t ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'ORGANIC CHEMICALS' AND t.object_type_id = 2)) AND exists ( SELECT 1 FROM gene_chem_reference_axn gcra WHERE gcr.id = gcra.gene_chem_reference_id AND gcra.action_type_nm IN ( SELECT ac.nm FROM action_type ap, action_type ac WHERE ac.subset_left_no BETWEEN ap.subset_left_no AND ap.subset_right_no AND (ap.nm = 'response to substance')) AND (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 500;
Date: 2024-10-30 07:32:29 Duration: 3m45s Database: ctdprd51 User: pubeu Bind query: yes
19 3m8s 1 3m8s 3m8s 3m8s create unique index gene_disease_reference_ak1 on pub2.gene_disease_reference using btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Oct 30 11 1 3m8s 3m8s -
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub2.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-10-30 11:49:55 Duration: 3m8s Bind query: yes
-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub2.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-10-30 11:49:55 Duration: 0ms
20 3m2s 43 3s878ms 10s841ms 4s236ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Oct 30 02 3 18s916ms 6s305ms 04 2 8s247ms 4s123ms 05 2 7s923ms 3s961ms 08 2 7s991ms 3s995ms 09 1 3s978ms 3s978ms 12 2 8s108ms 4s54ms 13 2 8s258ms 4s129ms 14 4 16s481ms 4s120ms 15 11 43s853ms 3s986ms 16 2 7s869ms 3s934ms 17 2 8s253ms 4s126ms 18 7 30s196ms 4s313ms 20 1 4s147ms 4s147ms 23 2 7s956ms 3s978ms [ User: pubeu - Total duration: 1m37s - Times executed: 24 ]
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1304073') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1304073') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-10-30 02:08:49 Duration: 10s841ms Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343235') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343235') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-10-30 18:22:11 Duration: 4s691ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1295996') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1295996') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-10-30 18:17:31 Duration: 4s547ms Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 108 2m8s 1s91ms 2s163ms 1s190ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Oct 30 00 2 2s321ms 1s160ms 01 3 3s605ms 1s201ms 02 13 16s151ms 1s242ms 03 8 9s339ms 1s167ms 04 4 4s756ms 1s189ms 05 6 7s384ms 1s230ms 06 3 3s566ms 1s188ms 07 5 5s961ms 1s192ms 08 7 8s249ms 1s178ms 09 2 2s367ms 1s183ms 10 2 2s251ms 1s125ms 11 3 3s418ms 1s139ms 12 5 5s899ms 1s179ms 13 7 8s427ms 1s203ms 14 3 3s516ms 1s172ms 15 5 5s863ms 1s172ms 16 3 3s457ms 1s152ms 17 2 2s357ms 1s178ms 18 6 7s168ms 1s194ms 19 2 2s345ms 1s172ms 20 3 3s535ms 1s178ms 21 4 4s741ms 1s185ms 22 6 7s186ms 1s197ms 23 4 4s681ms 1s170ms [ User: pubeu - Total duration: 1m11s - Times executed: 61 ]
[ User: qaeu - Total duration: 1s301ms - Times executed: 1 ]
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1471325' or receptorTerm.id = '1471325' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-10-30 02:32:31 Duration: 2s163ms Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1439394' or receptorTerm.id = '1439394' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-10-30 05:43:41 Duration: 1s301ms Database: ctdprd51 User: qaeu Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1439394' or receptorTerm.id = '1439394' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-10-30 05:38:39 Duration: 1s298ms Bind query: yes
2 46 4m 1s6ms 7s60ms 5s222ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Oct 30 00 3 11s455ms 3s818ms 01 3 15s995ms 5s331ms 02 8 44s43ms 5s505ms 04 5 26s858ms 5s371ms 05 2 6s200ms 3s100ms 06 2 10s384ms 5s192ms 08 2 11s36ms 5s518ms 09 2 11s61ms 5s530ms 11 1 7s60ms 7s60ms 13 2 12s99ms 6s49ms 15 1 1s76ms 1s76ms 17 2 11s449ms 5s724ms 18 9 54s667ms 6s74ms 21 1 1s36ms 1s36ms 22 2 10s713ms 5s356ms 23 1 5s107ms 5s107ms [ User: pubeu - Total duration: 1m24s - Times executed: 17 ]
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1262309' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-10-30 11:56:40 Duration: 7s60ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1343235' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-10-30 18:23:57 Duration: 7s37ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1263198' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-10-30 13:24:17 Duration: 6s166ms Database: ctdprd51 User: pubeu Bind query: yes
3 43 3m2s 3s878ms 10s841ms 4s236ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Oct 30 02 3 18s916ms 6s305ms 04 2 8s247ms 4s123ms 05 2 7s923ms 3s961ms 08 2 7s991ms 3s995ms 09 1 3s978ms 3s978ms 12 2 8s108ms 4s54ms 13 2 8s258ms 4s129ms 14 4 16s481ms 4s120ms 15 11 43s853ms 3s986ms 16 2 7s869ms 3s934ms 17 2 8s253ms 4s126ms 18 7 30s196ms 4s313ms 20 1 4s147ms 4s147ms 23 2 7s956ms 3s978ms [ User: pubeu - Total duration: 1m37s - Times executed: 24 ]
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1304073') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1304073') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-10-30 02:08:49 Duration: 10s841ms Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343235') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343235') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-10-30 18:22:11 Duration: 4s691ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1295996') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1295996') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-10-30 18:17:31 Duration: 4s547ms Bind query: yes
4 36 47s700ms 1s206ms 2s364ms 1s325ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Oct 30 00 1 1s295ms 1s295ms 01 1 1s299ms 1s299ms 02 4 6s146ms 1s536ms 03 2 2s547ms 1s273ms 04 4 5s235ms 1s308ms 05 2 2s745ms 1s372ms 08 3 4s40ms 1s346ms 09 2 2s563ms 1s281ms 10 1 1s237ms 1s237ms 11 1 1s232ms 1s232ms 12 1 1s240ms 1s240ms 13 4 5s130ms 1s282ms 14 2 2s634ms 1s317ms 15 2 2s459ms 1s229ms 17 2 2s774ms 1s387ms 19 2 2s506ms 1s253ms 22 1 1s278ms 1s278ms 23 1 1s331ms 1s331ms [ User: pubeu - Total duration: 25s793ms - Times executed: 19 ]
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1218009') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1218009') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-10-30 02:14:20 Duration: 2s364ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1243444') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1243444') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-10-30 17:02:56 Duration: 1s554ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1246840') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1246840') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-10-30 08:02:16 Duration: 1s387ms Bind query: yes
5 33 4h49m5s 1s193ms 18m12s 8m45s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Oct 30 02 16 4h5m45s 15m21s 03 1 17m26s 17m26s 04 1 17m46s 17m46s 06 1 1s528ms 1s528ms 08 12 6m44s 33s691ms 15 1 6s195ms 6s195ms 22 1 1m14s 1m14s [ User: pubeu - Total duration: 2h26m - Times executed: 14 ]
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-10-30 02:49:25 Duration: 18m12s Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-10-30 04:16:57 Duration: 17m46s Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-10-30 02:48:47 Duration: 17m42s Database: ctdprd51 User: pubeu Bind query: yes
6 33 23m36s 1s374ms 6m30s 42s926ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Oct 30 09 6 1m7s 11s256ms 11 3 7m43s 2m34s 12 3 6m54s 2m18s 13 15 4m12s 16s857ms 14 6 3m38s 36s367ms [ User: load - Total duration: 13m5s - Times executed: 17 ]
[ Application: pg_bulkload - Total duration: 13m5s - Times executed: 17 ]
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-10-30 11:44:24 Duration: 6m30s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-10-30 12:12:16 Duration: 5m15s Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.TERM_ENRICHMENT_AGENT,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.log,parse-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.DUPE}');
Date: 2024-10-30 14:01:24 Duration: 2m59s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
7 30 44s266ms 1s38ms 2s762ms 1s475ms select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select count(*) from pg_catalog.pg_stat_activity where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Total", ( select count(*) from pg_catalog.pg_stat_activity where state = ? and datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Active", ( select count(*) from pg_catalog.pg_stat_activity where state = ? and datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Idle") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(xact_commit) + sum(xact_rollback) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Transactions", ( select sum(xact_commit) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Commits", ( select sum(xact_rollback) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Rollbacks") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(tup_inserted) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Inserts", ( select sum(tup_updated) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Updates", ( select sum(tup_deleted) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Deletes") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(tup_fetched) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Fetched", ( select sum(tup_returned) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Returned") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(blks_read) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Reads", ( select sum(blks_hit) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Hits") t;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Oct 30 10 3 4s722ms 1s574ms 11 20 29s257ms 1s462ms 12 3 3s664ms 1s221ms 14 4 6s622ms 1s655ms [ User: edit - Total duration: 1s131ms - Times executed: 1 ]
[ Application: pgAdmin 4 - DB:ctdprd51 - Total duration: 1s131ms - Times executed: 1 ]
-
/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-10-30 14:17:50 Duration: 2s762ms
-
/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-10-30 10:59:07 Duration: 2s528ms
-
/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-10-30 11:54:05 Duration: 2s494ms
8 29 38s669ms 1s222ms 2s290ms 1s333ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Oct 30 00 1 1s313ms 1s313ms 01 1 1s383ms 1s383ms 02 4 6s95ms 1s523ms 05 2 2s879ms 1s439ms 06 1 1s296ms 1s296ms 08 1 1s362ms 1s362ms 09 4 5s50ms 1s262ms 11 1 1s233ms 1s233ms 13 3 3s920ms 1s306ms 14 1 1s305ms 1s305ms 17 2 2s568ms 1s284ms 20 3 3s833ms 1s277ms 21 2 2s533ms 1s266ms 22 1 1s264ms 1s264ms 23 2 2s626ms 1s313ms [ User: pubeu - Total duration: 19s465ms - Times executed: 15 ]
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2079260') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2079260') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-10-30 02:36:21 Duration: 2s290ms Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2077448') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2077448') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-10-30 05:38:41 Duration: 1s469ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2077448') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2077448') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-10-30 05:43:42 Duration: 1s410ms Bind query: yes
9 24 47s682ms 1s54ms 2s305ms 1s986ms select count(*) from gene_disease gd where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?);Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Oct 30 02 23 46s543ms 2s23ms 18 1 1s138ms 1s138ms [ User: pubeu - Total duration: 13s648ms - Times executed: 7 ]
-
SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2085817');
Date: 2024-10-30 02:35:28 Duration: 2s305ms Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2081340');
Date: 2024-10-30 02:15:36 Duration: 2s234ms Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2086135');
Date: 2024-10-30 02:34:19 Duration: 2s142ms Bind query: yes
10 22 1m29s 1s39ms 20s650ms 4s49ms select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Oct 30 03 4 13s655ms 3s413ms 08 12 36s890ms 3s74ms 09 2 30s277ms 15s138ms 10 1 1s60ms 1s60ms 15 1 2s250ms 2s250ms 18 1 1s166ms 1s166ms 20 1 3s777ms 3s777ms [ User: pubeu - Total duration: 29s450ms - Times executed: 7 ]
-
SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1217863') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-10-30 09:21:16 Duration: 20s650ms Bind query: yes
-
SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1217862') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-10-30 08:14:14 Duration: 10s651ms Bind query: yes
-
SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1241675') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-10-30 03:23:01 Duration: 9s893ms Database: ctdprd51 User: pubeu Bind query: yes
11 19 11m21s 2s127ms 8m57s 35s870ms select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Oct 30 09 8 9m47s 1m13s 10 11 1m34s 8s562ms [ User: load - Total duration: 8m57s - Times executed: 1 ]
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 09:33:04 Duration: 8m57s Database: ctdprd51 User: load Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 10:01:07 Duration: 37s336ms Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 10:06:00 Duration: 37s250ms Bind query: yes
12 18 25s643ms 1s114ms 3s308ms 1s424ms select c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposurereferencecount, case when cd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from chem_disease_axn a where a.chem_id = cd.chem_id and a.disease_id = cd.disease_id) else null end actiontypes from chem_disease cd inner join term c on cd.chem_id = c.id inner join term d on cd.disease_id = d.id where cd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, cd.network_score desc nulls last, d.nm_sort, c.nm_sort limit ? offset ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Oct 30 10 1 1s311ms 1s311ms 14 17 24s332ms 1s431ms [ User: pubeu - Total duration: 5s734ms - Times executed: 3 ]
-
SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2087863') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50 OFFSET 407200;
Date: 2024-10-30 14:40:54 Duration: 3s308ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2087863') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50 OFFSET 500;
Date: 2024-10-30 14:41:57 Duration: 1s397ms Bind query: yes
-
SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2087863') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50 OFFSET 1150;
Date: 2024-10-30 14:42:12 Duration: 1s352ms Bind query: yes
13 16 23s345ms 1s327ms 2s171ms 1s459ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Oct 30 02 3 4s271ms 1s423ms 03 1 1s327ms 1s327ms 04 1 1s418ms 1s418ms 05 2 2s807ms 1s403ms 08 2 2s714ms 1s357ms 09 2 2s781ms 1s390ms 12 4 5s852ms 1s463ms 23 1 2s171ms 2s171ms [ User: pubeu - Total duration: 6s969ms - Times executed: 5 ]
-
SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-10-30 23:37:35 Duration: 2s171ms Bind query: yes
-
SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-10-30 12:14:27 Duration: 1s533ms Bind query: yes
-
SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-10-30 12:11:59 Duration: 1s489ms Bind query: yes
14 14 49s262ms 1s23ms 11s89ms 3s518ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Oct 30 01 2 6s930ms 3s465ms 02 1 2s488ms 2s488ms 04 3 6s450ms 2s150ms 06 1 1s142ms 1s142ms 08 1 1s23ms 1s23ms 14 4 26s267ms 6s566ms 15 1 2s139ms 2s139ms 20 1 2s820ms 2s820ms [ User: pubeu - Total duration: 32s860ms - Times executed: 7 ]
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2087863') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-10-30 14:37:41 Duration: 11s89ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2087863') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-10-30 14:37:48 Duration: 11s47ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2076076') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-10-30 01:32:22 Duration: 4s799ms Bind query: yes
15 11 30s809ms 2s737ms 2s871ms 2s800ms select distinct ri.reference_acc_txt, to_char(ri.create_tm, ?), ri.create_by, ?, ? from edit.reference_ixn ri union select distinct re.reference_acc_txt, ?, ?, ?, ? from pub1.reference_exp re where reference_acc_txt not in ( select reference_acc_txt from edit.reference_ixn) union select ur.reference_acc_txt, to_char(ur.create_tm, ?), ur.create_by, ?, ? from edit.uncuratable_reference ur order by reference_acc_txt asc;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Oct 30 06 1 2s767ms 2s767ms 07 8 22s428ms 2s803ms 08 2 5s614ms 2s807ms [ User: editeu - Total duration: 5s514ms - Times executed: 2 ]
-
select distinct ri.reference_acc_txt, to_char(ri.create_tm, 'mm-dd-yyyy'), ri.create_by, 'Yes', 'Conventional or Mixed' from edit.reference_ixn ri UNION select distinct re.reference_acc_txt, '' ,'', 'Yes', 'Exposure-only' from pub1.REFERENCE_EXP re where reference_acc_txt not in ( select reference_acc_txt from edit.reference_ixn) UNION select ur.reference_acc_txt, to_char(ur.create_tm, 'mm-dd-yyyy'), ur.create_by, 'No', 'N/A' from edit.UNCURATABLE_REFERENCE ur order by reference_acc_txt asc;
Date: 2024-10-30 07:10:02 Duration: 2s871ms Bind query: yes
-
select distinct ri.reference_acc_txt, to_char(ri.create_tm, 'mm-dd-yyyy'), ri.create_by, 'Yes', 'Conventional or Mixed' from edit.reference_ixn ri UNION select distinct re.reference_acc_txt, '' ,'', 'Yes', 'Exposure-only' from pub1.REFERENCE_EXP re where reference_acc_txt not in ( select reference_acc_txt from edit.reference_ixn) UNION select ur.reference_acc_txt, to_char(ur.create_tm, 'mm-dd-yyyy'), ur.create_by, 'No', 'N/A' from edit.UNCURATABLE_REFERENCE ur order by reference_acc_txt asc;
Date: 2024-10-30 07:58:33 Duration: 2s838ms Bind query: yes
-
select distinct ri.reference_acc_txt, to_char(ri.create_tm, 'mm-dd-yyyy'), ri.create_by, 'Yes', 'Conventional or Mixed' from edit.reference_ixn ri UNION select distinct re.reference_acc_txt, '' ,'', 'Yes', 'Exposure-only' from pub1.REFERENCE_EXP re where reference_acc_txt not in ( select reference_acc_txt from edit.reference_ixn) UNION select ur.reference_acc_txt, to_char(ur.create_tm, 'mm-dd-yyyy'), ur.create_by, 'No', 'N/A' from edit.UNCURATABLE_REFERENCE ur order by reference_acc_txt asc;
Date: 2024-10-30 08:14:08 Duration: 2s837ms Bind query: yes
16 10 22s131ms 1s443ms 2s560ms 2s213ms select * from ( select g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, count(*) over () fullrowcount from term g where g.id in ( select gt.gene_id from dag_path dp inner join gene_taxon gt on dp.descendant_object_id = gt.taxon_id where dp.ancestor_object_id = ? union all select gcr.gene_id from dag_path dp inner join gene_chem_reference gcr on dp.descendant_object_id = gcr.taxon_id where dp.ancestor_object_id = ?) offset ?) mq order by mq.genesymbolsort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Oct 30 02 6 13s139ms 2s189ms 14 4 8s992ms 2s248ms [ User: pubeu - Total duration: 2s165ms - Times executed: 1 ]
-
SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '568394' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '568394') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2024-10-30 14:09:02 Duration: 2s560ms Bind query: yes
-
SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '663761' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '663761') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2024-10-30 14:08:34 Duration: 2s520ms Bind query: yes
-
SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '663762' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '663762') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2024-10-30 14:08:46 Duration: 2s467ms Bind query: yes
17 9 24s223ms 1s20ms 5s809ms 2s691ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where phenotypeterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and associatedterm.object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Oct 30 02 1 1s20ms 1s20ms 08 8 23s202ms 2s900ms [ User: pubeu - Total duration: 5s941ms - Times executed: 2 ]
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1217862'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-10-30 08:14:01 Duration: 5s809ms Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1249241'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-10-30 08:11:48 Duration: 4s594ms Database: ctdprd51 User: pubeu Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1232811'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-10-30 08:13:39 Duration: 3s931ms Bind query: yes
18 8 21s398ms 1s928ms 3s562ms 2s674ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where associatedterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Oct 30 05 1 1s928ms 1s928ms 09 1 3s424ms 3s424ms 16 4 10s606ms 2s651ms 17 1 2s35ms 2s35ms 22 1 3s403ms 3s403ms [ User: pubeu - Total duration: 13s801ms - Times executed: 5 ]
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1434692'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-10-30 16:51:14 Duration: 3s562ms Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1434692'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-10-30 09:42:14 Duration: 3s424ms Database: ctdprd51 User: pubeu Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1434692'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-10-30 22:29:50 Duration: 3s403ms Database: ctdprd51 User: pubeu Bind query: yes
19 8 15s15ms 1s40ms 2s633ms 1s876ms select pg_database_size(datname::text) from pg_catalog.pg_database where datistemplate = false and datname = ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Oct 30 10 1 2s300ms 2s300ms 11 4 6s914ms 1s728ms 18 3 5s801ms 1s933ms [ User: zbx_monitor - Total duration: 5s183ms - Times executed: 2 ]
-
SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = 'ctdprd51';
Date: 2024-10-30 18:14:25 Duration: 2s633ms Database: ctdprd51 User: zbx_monitor Bind query: yes
-
SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = 'ctdprd51';
Date: 2024-10-30 11:49:42 Duration: 2s550ms Database: ctdprd51 User: zbx_monitor Bind query: yes
-
SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = 'ctdprd51';
Date: 2024-10-30 10:59:06 Duration: 2s300ms Bind query: yes
20 8 9s824ms 1s18ms 1s604ms 1s228ms select c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposurereferencecount, case when cd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from chem_disease_axn a where a.chem_id = cd.chem_id and a.disease_id = cd.disease_id) else null end actiontypes from chem_disease cd inner join term c on cd.chem_id = c.id inner join term d on cd.disease_id = d.id where cd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, cd.network_score desc nulls last, d.nm_sort, c.nm_sort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Oct 30 04 1 1s65ms 1s65ms 07 1 1s604ms 1s604ms 10 2 2s346ms 1s173ms 13 1 1s234ms 1s234ms 14 2 2s554ms 1s277ms 16 1 1s18ms 1s18ms [ User: pubeu - Total duration: 7s517ms - Times executed: 6 ]
-
SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2081060') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2024-10-30 07:46:20 Duration: 1s604ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2087863') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2024-10-30 14:39:27 Duration: 1s289ms Bind query: yes
-
SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2087863') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2024-10-30 14:39:12 Duration: 1s265ms Database: ctdprd51 User: pubeu Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 2h1m31s 2h1m31s 2h1m31s 1 2h1m31s select pub2.maint_term_derive_data ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Oct 30 20 1 2h1m31s 2h1m31s -
select pub2.maint_term_derive_data ();
Date: 2024-10-30 20:52:25 Duration: 2h1m31s Bind query: yes
2 1h36m38s 1h36m38s 1h36m38s 1 1h36m38s select pub2.maint_gene_chem_ref_gene_form_refresh ();Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Oct 30 16 1 1h36m38s 1h36m38s -
select pub2.maint_gene_chem_ref_gene_form_refresh ();
Date: 2024-10-30 16:49:24 Duration: 1h36m38s Bind query: yes
3 1h5m45s 1h5m45s 1h5m45s 1 1h5m45s select maint_term_derive_nm_fts ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Oct 30 17 1 1h5m45s 1h5m45s -
SELECT maint_term_derive_nm_fts ();
Date: 2024-10-30 17:58:05 Duration: 1h5m45s Bind query: yes
4 46m46s 46m46s 46m46s 1 46m46s vacuum full analyze;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Oct 30 18 1 46m46s 46m46s -
VACUUM FULL ANALYZE;
Date: 2024-10-30 18:50:31 Duration: 46m46s Bind query: yes
-
VACUUM FULL ANALYZE;
Date: 2024-10-30 18:03:45 Duration: 0ms
5 42m6s 42m6s 42m6s 1 42m6s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.gene_go_annot gga, pub2.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Oct 30 11 1 42m6s 42m6s -
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.GENE_GO_ANNOT gga, pub2.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 11:33:05 Duration: 42m6s Bind query: yes
6 36m31s 36m31s 36m31s 1 36m31s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.object_type where cd = ?), ptr.term_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.phenotype_term_reference ptr, pub2.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Oct 30 10 1 36m31s 36m31s -
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub2.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 10:50:53 Duration: 36m31s Bind query: yes
7 34m48s 34m48s 34m48s 1 34m48s select i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) from edit.ixn i, edit.reference_ixn r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in (...) order by i.id asc;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Oct 30 09 1 34m48s 34m48s -
SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;
Date: 2024-10-30 09:21:15 Duration: 34m48s Bind query: yes
8 33m45s 33m45s 33m45s 1 33m45s select pub2.maint_cached_value_refresh_data_metrics ();Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Oct 30 21 1 33m45s 33m45s -
select pub2.maint_cached_value_refresh_data_metrics ();
Date: 2024-10-30 21:36:28 Duration: 33m45s Bind query: yes
-
select pub2.maint_cached_value_refresh_data_metrics ();
Date: 2024-10-30 21:32:10 Duration: 0ms
9 23m47s 23m47s 23m47s 1 23m47s update pub2.gene_disease gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.gene_disease_reference gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.reference r where has_exposures = true));Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Oct 30 15 1 23m47s 23m47s -
update pub2.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.REFERENCE r where has_exposures = true));
Date: 2024-10-30 15:07:18 Duration: 23m47s Bind query: yes
10 18m25s 18m25s 18m25s 1 18m25s select maint_query_logs_archive ();Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Oct 30 00 1 18m25s 18m25s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-10-30 00:18:27 Duration: 18m25s
11 12m48s 12m48s 12m48s 1 12m48s alter table pub2.term_enrichment_agent add constraint term_enr_agent_term_enr_fk foreign key (term_id, enriched_term_id) references term_enrichment (term_id, enriched_term_id);Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Oct 30 14 1 12m48s 12m48s -
ALTER TABLE pub2.term_enrichment_agent ADD CONSTRAINT term_enr_agent_term_enr_fk FOREIGN KEY (term_id, enriched_term_id) REFERENCES term_enrichment (term_id, enriched_term_id);
Date: 2024-10-30 14:17:08 Duration: 12m48s Bind query: yes
12 11m38s 11m38s 11m38s 1 11m38s select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gi.id gene_id from term gi where gi.object_type_id = ? and upper(gi.nm) like ?) intersect ( select ai.gene_id from dag_path pi inner join gene_go_annot ai on pi.descendant_object_id = ai.go_term_id inner join term_label li on li.term_id = pi.ancestor_object_id where upper(li.nm) like ? and li.object_type_id = ?) intersect ( select tp.term_id from term_pathway tp where tp.object_type_id = ? and upper(tp.pathway_acc_txt) = ? and tp.pathway_acc_db_cd = ?))) and gcr.chem_id = any (array ( select dp.descendant_object_id from dag_path dp inner join term_label l on l.term_id = dp.ancestor_object_id where upper(l.nm) like ? and l.object_type_id = ?)) and gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by i.sort_txt, g.nm_sort, c.nm_sort limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Oct 30 05 1 11m38s 11m38s [ User: pubeu - Total duration: 11m38s - Times executed: 1 ]
-
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'gene'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Name */ gi.id gene_id FROM term gi WHERE gi.object_type_id = 4 AND UPPER(gi.nm) LIKE 'TNFRSF1A') INTERSECT ( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE 'ALL' AND li.object_type_id = 5) INTERSECT ( SELECT /* IQH.getMasterPathwayWhereEquals.Acc */ tp.term_id FROM term_pathway tp WHERE tp.object_type_id = 4 AND UPPER(tp.pathway_acc_txt) = 'HSA04668' AND tp.pathway_acc_db_cd = 'KEGG'))) AND gcr.chem_id = ANY (ARRAY ( SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE 'TRIS(1,3-DICHLORO-2-PROPYL)PHOSPHATE' AND l.object_type_id = 2)) AND gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY i.sort_txt, g.nm_sort, c.nm_sort LIMIT 50;
Date: 2024-10-30 05:08:32 Duration: 11m38s Database: ctdprd51 User: pubeu Bind query: yes
13 9m7s 9m7s 9m7s 1 9m7s select pub2.maint_phenotype_term_derive_data ();Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Oct 30 21 1 9m7s 9m7s -
select pub2.maint_phenotype_term_derive_data ();
Date: 2024-10-30 21:02:43 Duration: 9m7s Bind query: yes
14 1s193ms 18m12s 8m45s 33 4h49m5s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Oct 30 02 16 4h5m45s 15m21s 03 1 17m26s 17m26s 04 1 17m46s 17m46s 06 1 1s528ms 1s528ms 08 12 6m44s 33s691ms 15 1 6s195ms 6s195ms 22 1 1m14s 1m14s [ User: pubeu - Total duration: 2h26m - Times executed: 14 ]
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-10-30 02:49:25 Duration: 18m12s Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-10-30 04:16:57 Duration: 17m46s Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1241675') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-10-30 02:48:47 Duration: 17m42s Database: ctdprd51 User: pubeu Bind query: yes
15 3m45s 3m45s 3m45s 1 3m45s select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.chem_id = any (array ( select dp.descendant_object_id from dag_path dp inner join term t on t.id = dp.ancestor_object_id where upper(t.nm) like ? and t.object_type_id = ?)) and exists ( select ? from gene_chem_reference_axn gcra where gcr.id = gcra.gene_chem_reference_id and gcra.action_type_nm in ( select ac.nm from action_type ap, action_type ac where ac.subset_left_no between ap.subset_left_no and ap.subset_right_no and (ap.nm = ?)) and (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Oct 30 07 1 3m45s 3m45s [ User: pubeu - Total duration: 3m45s - Times executed: 1 ]
-
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'gene'))) AND gcr.chem_id = ANY (ARRAY ( SELECT /* CIQH.getIxnChemWhereEquals.Name */ dp.descendant_object_id FROM dag_path dp INNER JOIN term t ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'ORGANIC CHEMICALS' AND t.object_type_id = 2)) AND exists ( SELECT 1 FROM gene_chem_reference_axn gcra WHERE gcr.id = gcra.gene_chem_reference_id AND gcra.action_type_nm IN ( SELECT ac.nm FROM action_type ap, action_type ac WHERE ac.subset_left_no BETWEEN ap.subset_left_no AND ap.subset_right_no AND (ap.nm = 'response to substance')) AND (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 500;
Date: 2024-10-30 07:32:29 Duration: 3m45s Database: ctdprd51 User: pubeu Bind query: yes
16 3m8s 3m8s 3m8s 1 3m8s create unique index gene_disease_reference_ak1 on pub2.gene_disease_reference using btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Oct 30 11 1 3m8s 3m8s -
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub2.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-10-30 11:49:55 Duration: 3m8s Bind query: yes
-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub2.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-10-30 11:49:55 Duration: 0ms
17 1s374ms 6m30s 42s926ms 33 23m36s select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Oct 30 09 6 1m7s 11s256ms 11 3 7m43s 2m34s 12 3 6m54s 2m18s 13 15 4m12s 16s857ms 14 6 3m38s 36s367ms [ User: load - Total duration: 13m5s - Times executed: 17 ]
[ Application: pg_bulkload - Total duration: 13m5s - Times executed: 17 ]
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-10-30 11:44:24 Duration: 6m30s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-10-30 12:12:16 Duration: 5m15s Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.TERM_ENRICHMENT_AGENT,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.log,parse-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.DUPE}');
Date: 2024-10-30 14:01:24 Duration: 2m59s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
18 2s127ms 8m57s 35s870ms 19 11m21s select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Oct 30 09 8 9m47s 1m13s 10 11 1m34s 8s562ms [ User: load - Total duration: 8m57s - Times executed: 1 ]
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 09:33:04 Duration: 8m57s Database: ctdprd51 User: load Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 10:01:07 Duration: 37s336ms Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-10-30 10:06:00 Duration: 37s250ms Bind query: yes
19 1s6ms 7s60ms 5s222ms 46 4m select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Oct 30 00 3 11s455ms 3s818ms 01 3 15s995ms 5s331ms 02 8 44s43ms 5s505ms 04 5 26s858ms 5s371ms 05 2 6s200ms 3s100ms 06 2 10s384ms 5s192ms 08 2 11s36ms 5s518ms 09 2 11s61ms 5s530ms 11 1 7s60ms 7s60ms 13 2 12s99ms 6s49ms 15 1 1s76ms 1s76ms 17 2 11s449ms 5s724ms 18 9 54s667ms 6s74ms 21 1 1s36ms 1s36ms 22 2 10s713ms 5s356ms 23 1 5s107ms 5s107ms [ User: pubeu - Total duration: 1m24s - Times executed: 17 ]
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1262309' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-10-30 11:56:40 Duration: 7s60ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1343235' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-10-30 18:23:57 Duration: 7s37ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1263198' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-10-30 13:24:17 Duration: 6s166ms Database: ctdprd51 User: pubeu Bind query: yes
20 3s878ms 10s841ms 4s236ms 43 3m2s select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Oct 30 02 3 18s916ms 6s305ms 04 2 8s247ms 4s123ms 05 2 7s923ms 3s961ms 08 2 7s991ms 3s995ms 09 1 3s978ms 3s978ms 12 2 8s108ms 4s54ms 13 2 8s258ms 4s129ms 14 4 16s481ms 4s120ms 15 11 43s853ms 3s986ms 16 2 7s869ms 3s934ms 17 2 8s253ms 4s126ms 18 7 30s196ms 4s313ms 20 1 4s147ms 4s147ms 23 2 7s956ms 3s978ms [ User: pubeu - Total duration: 1m37s - Times executed: 24 ]
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1304073') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1304073') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-10-30 02:08:49 Duration: 10s841ms Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343235') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343235') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-10-30 18:22:11 Duration: 4s691ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1295996') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1295996') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-10-30 18:17:31 Duration: 4s547ms Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 1s757ms 1 1s757ms 1s757ms 1s757ms select distinct ptr.phenotype_id, ptr.term_id, i.action_type_nm, i.action_type_cd, i.action_degree_type_nm, i.action_degree_type_cd from pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.IXN_AXN i where ptr.ixn_id = i.ixn_id;Times Reported Time consuming bind #1
Day Hour Count Duration Avg duration Oct 30 14 1 1s757ms 1s757ms -
select distinct ptr.phenotype_id, ptr.term_id, i.action_type_nm, i.action_type_cd, i.action_degree_type_nm, i.action_degree_type_cd from pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.IXN_AXN i where ptr.ixn_id = i.ixn_id;
Date: 2024-10-30 14:35:43 Duration: 1s757ms Database: postgres
2 0ms 34 0ms 0ms 0ms ;Times Reported Time consuming bind #2
Day Hour Count Duration Avg duration Oct 29 05 4 0ms 0ms 06 8 0ms 0ms 09 2 0ms 0ms 10 2 0ms 0ms 11 2 0ms 0ms 13 1 0ms 0ms Oct 30 07 4 0ms 0ms 09 3 0ms 0ms 14 6 0ms 0ms 16 1 0ms 0ms 19 1 0ms 0ms [ User: pubeu - Total duration: 29s945ms - Times executed: 16 ]
-
;
Date: Duration: 0ms Database: postgres
-
Events
Log levels
Key values
- 17,282 Log entries
Events distribution
Key values
- 0 PANIC entries
- 23 FATAL entries
- 33 ERROR entries
- 1311 WARNING entries
Most Frequent Errors/Events
Key values
- 1,038 Max number of times the same event was reported
- 1,367 Total events found
Rank Times reported Error 1 1,038 WARNING: skipping "..." --- only table or database owner can vacuum it
Times Reported Most Frequent Error / Event #1
Day Hour Count Oct 30 18 1,038 2 224 WARNING: skipping "..." --- only superuser or database owner can vacuum it
Times Reported Most Frequent Error / Event #2
Day Hour Count Oct 30 18 224 3 43 WARNING: skipping "..." --- only superuser can vacuum it
Times Reported Most Frequent Error / Event #3
Day Hour Count Oct 30 18 43 4 19 LOG: could not send data to client: Broken pipe
Times Reported Most Frequent Error / Event #4
Day Hour Count Oct 30 02 14 03 1 04 1 11 2 18 1 5 19 FATAL: connection to client lost
Times Reported Most Frequent Error / Event #5
Day Hour Count Oct 30 02 14 03 1 04 1 11 2 18 1 6 7 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #6
Day Hour Count Oct 30 19 1 22 6 7 6 WARNING: there is no transaction in progress
Times Reported Most Frequent Error / Event #7
Day Hour Count Oct 30 17 1 18 1 20 3 21 1 8 4 FATAL: password authentication failed for user "..."
Times Reported Most Frequent Error / Event #8
Day Hour Count Oct 30 08 4 - FATAL: password authentication failed for user "load"
Detail: Connection matched pg_hba.conf line 85: "host all all 192.168.201.0/24 md5 "
Date: 2024-10-30 08:44:06
9 3 LOG: could not receive data from client: Connection reset by peer
Times Reported Most Frequent Error / Event #9
Day Hour Count Oct 30 11 1 12 1 13 1 10 2 ERROR: canceling statement due to user request
Times Reported Most Frequent Error / Event #10
Day Hour Count Oct 30 11 2 - ERROR: canceling statement due to user request
Statement: SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = $1;
Date: 2024-10-30 11:49:08
11 1 LOG: process ... still waiting for ShareLock on relation ... of database ... after ... ms
Times Reported Most Frequent Error / Event #11
Day Hour Count Oct 30 18 1 - ERROR: process 131525 still waiting for ShareLock on relation 6503262 of database 484829 after 1000.094 ms
Detail: Process holding the lock: 167979. Wait queue: 131525.
Statement: CREATE INDEX ftsix_term_label_nm ON pub2.TERM_LABEL USING gin(nm_fts)Date: 2024-10-30 18:01:31
12 1 ERROR: canceling autovacuum task
Times Reported Most Frequent Error / Event #12
Day Hour Count Oct 30 18 1