pgBadger-
Global information
- Generated on Sun Mar 31 04:15:26 2024
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20240330
- Parsed 950,624 log entries in 24s
- Log start from 2024-03-24 00:00:01 to 2024-03-30 23:59:44
-
Overview
Global Stats
- 561 Number of unique normalized queries
- 8,019 Number of queries
- 1d2h21m42s Total query duration
- 2024-03-24 00:08:09 First query
- 2024-03-30 23:56:23 Last query
- 15 queries/s at 2024-03-29 12:12:41 Query peak
- 1d2h21m42s Total query duration
- 0ms Prepare/parse total duration
- 1s633ms Bind total duration
- 1d2h21m40s Execute total duration
- 1,480 Number of events
- 13 Number of unique normalized events
- 1,152 Max number of times the same event was reported
- 0 Number of cancellation
- 181 Total number of automatic vacuums
- 286 Total number of automatic analyzes
- 2,931 Number temporary file
- 39.38 GiB Max size of temporary file
- 196.65 MiB Average size of temporary file
- 91,187 Total number of sessions
- 181 sessions at 2024-03-28 03:24:12 Session peak
- 314d13h57m58s Total duration of sessions
- 4m58s Average duration of sessions
- 0 Average queries per session
- 1s40ms Average queries duration per session
- 4m57s Average idle time per session
- 91,188 Total number of connections
- 104 connections/s at 2024-03-28 03:23:12 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 15 queries/s Query Peak
- 2024-03-29 12:12:41 Date
SELECT Traffic
Key values
- 15 queries/s Query Peak
- 2024-03-29 12:12:41 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 3 queries/s Query Peak
- 2024-03-30 16:02:14 Date
Queries duration
Key values
- 1d2h21m42s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Mar 24 00 8 0ms 14m54s 1m54s 2s671ms 5s357ms 14m54s 01 7 0ms 12s685ms 5s275ms 3s981ms 4s644ms 12s685ms 02 15 0ms 6s416ms 2s35ms 2s487ms 4s292ms 6s416ms 03 20 0ms 11s957ms 3s119ms 4s354ms 5s226ms 18s53ms 04 20 0ms 6s646ms 3s523ms 5s808ms 14s2ms 17s901ms 05 61 0ms 15s220ms 2s658ms 15s220ms 18s520ms 22s649ms 06 25 0ms 30s656ms 5s940ms 9s374ms 15s977ms 51s994ms 07 4 0ms 2s809ms 1s630ms 0ms 1s102ms 4s40ms 08 8 0ms 12s290ms 3s151ms 1s200ms 2s573ms 12s290ms 09 11 0ms 6s785ms 3s690ms 4s59ms 4s462ms 6s785ms 10 20 0ms 30s659ms 6s459ms 5s114ms 9s324ms 51s889ms 11 12 0ms 5s639ms 2s706ms 3s885ms 4s101ms 5s639ms 12 5 0ms 5s936ms 3s54ms 1s195ms 1s435ms 5s936ms 13 13 0ms 17m15s 1m22s 2s496ms 3s509ms 17m28s 14 20 0ms 30s622ms 6s866ms 6s460ms 12s703ms 51s935ms 15 4 0ms 5s18ms 2s249ms 0ms 1s314ms 5s18ms 16 7 0ms 4s690ms 3s73ms 3s18ms 4s30ms 4s690ms 17 13 0ms 6s260ms 2s743ms 3s498ms 4s657ms 6s260ms 18 15 0ms 30s813ms 7s664ms 4s934ms 9s307ms 52s42ms 19 7 0ms 12s135ms 3s471ms 1s771ms 1s962ms 12s135ms 20 16 0ms 38s988ms 7s315ms 5s84ms 6s451ms 38s988ms 21 19 0ms 1m56s 8s758ms 5s997ms 8s238ms 1m56s 22 20 0ms 16s79ms 5s100ms 3s339ms 10s725ms 49s294ms 23 16 0ms 21s566ms 4s83ms 4s391ms 6s546ms 25s183ms Mar 25 00 11 0ms 14m53s 1m24s 3s122ms 5s539ms 14m53s 01 11 0ms 4s63ms 2s185ms 2s664ms 3s407ms 4s63ms 02 9 0ms 4s813ms 2s416ms 1s398ms 3s943ms 4s813ms 03 13 0ms 5s952ms 3s140ms 4s33ms 5s568ms 12s95ms 04 27 0ms 39s789ms 5s612ms 6s310ms 12s506ms 39s789ms 05 65 0ms 10s325ms 2s214ms 10s325ms 16s96ms 23s938ms 06 36 0ms 8m23s 21s215ms 9s706ms 40s340ms 9m22s 07 49 0ms 41s117ms 7s920ms 15s245ms 40s728ms 1m19s 08 23 0ms 8m23s 24s344ms 5s274ms 6s503ms 8m25s 09 25 0ms 17s958ms 2s880ms 3s956ms 6s719ms 17s958ms 10 26 0ms 30s635ms 5s604ms 6s384ms 12s246ms 52s186ms 11 54 0ms 2m40s 6s459ms 10s630ms 19s649ms 2m50s 12 30 0ms 12s103ms 2s896ms 5s709ms 7s299ms 12s103ms 13 19 0ms 13s140ms 3s134ms 4s992ms 5s384ms 13s140ms 14 34 0ms 30s709ms 4s712ms 7s980ms 9s48ms 51s877ms 15 17 0ms 6s864ms 2s557ms 1s978ms 4s861ms 10s567ms 16 19 0ms 4s728ms 1s898ms 2s748ms 4s16ms 4s728ms 17 31 0ms 6s799ms 2s78ms 3s786ms 7s720ms 11s456ms 18 33 0ms 30s615ms 4s487ms 8s242ms 9s362ms 51s972ms 19 25 0ms 5s276ms 2s154ms 5s297ms 5s612ms 6s764ms 20 45 0ms 12s477ms 5s148ms 13s329ms 23s979ms 49s246ms 21 52 0ms 12s705ms 4s280ms 24s433ms 25s650ms 28s816ms 22 34 0ms 12s147ms 2s278ms 2s938ms 8s405ms 13s782ms 23 15 0ms 6s755ms 2s452ms 2s257ms 3s993ms 6s755ms Mar 26 00 14 0ms 14m56s 1m7s 2s668ms 5s135ms 14m57s 01 13 0ms 12s811ms 3s187ms 2s541ms 4s539ms 12s811ms 02 13 0ms 6s986ms 1s965ms 1s251ms 2s340ms 6s986ms 03 25 0ms 6s817ms 2s189ms 4s778ms 6s817ms 8s66ms 04 26 0ms 6s599ms 2s805ms 5s85ms 5s210ms 10s853ms 05 57 0ms 6s688ms 2s194ms 6s688ms 16s418ms 23s36ms 06 28 0ms 30s595ms 6s782ms 4s907ms 37s35ms 52s719ms 07 42 0ms 6s628ms 1s923ms 4s966ms 5s648ms 7s275ms 08 15 0ms 1m58s 25s766ms 2s879ms 4s215ms 5m55s 09 24 0ms 11s882ms 3s243ms 5s607ms 7s938ms 11s882ms 10 28 0ms 30s796ms 5s271ms 6s647ms 8s820ms 51s887ms 11 17 0ms 12s166ms 3s602ms 5s857ms 10s791ms 12s166ms 12 17 0ms 7s206ms 3s590ms 4s61ms 6s971ms 14s386ms 13 15 0ms 6s992ms 3s582ms 6s888ms 7s882ms 14s108ms 14 31 0ms 30s650ms 4s239ms 5s541ms 9s327ms 52s50ms 15 12 0ms 17s921ms 4s920ms 1s247ms 13s997ms 17s921ms 16 14 0ms 6s713ms 4s163ms 4s141ms 13s970ms 14s57ms 17 12 0ms 4s688ms 3s17ms 2s703ms 13s996ms 14s16ms 18 13 0ms 30s622ms 8s388ms 5s125ms 8s285ms 51s910ms 19 8 0ms 5s328ms 2s229ms 1s239ms 4s52ms 5s328ms 20 12 0ms 4s718ms 3s177ms 2s 3s653ms 14s76ms 21 12 0ms 4s686ms 2s411ms 2s180ms 3s760ms 14s30ms 22 4 0ms 3s983ms 2s341ms 1s243ms 2s707ms 3s983ms 23 17 0ms 20s821ms 7s679ms 6s986ms 16s395ms 1m27s Mar 27 00 7 0ms 14m55s 2m10s 2s444ms 6s580ms 14m55s 01 11 0ms 13s195ms 4s638ms 4s207ms 7s990ms 17s420ms 02 9 0ms 5s256ms 1s634ms 1s288ms 3s374ms 5s256ms 03 9 0ms 5s303ms 2s573ms 2s365ms 4s2ms 7s964ms 04 11 0ms 4s114ms 2s239ms 2s592ms 3s974ms 5s496ms 05 50 0ms 4s53ms 2s204ms 8s514ms 13s614ms 22s770ms 06 37 0ms 30s585ms 5s249ms 9s309ms 28s314ms 52s34ms 07 5 0ms 2s166ms 1s427ms 1s71ms 1s258ms 2s166ms 08 22 0ms 12s434ms 5s120ms 6s935ms 12s434ms 27s705ms 09 7 0ms 6s929ms 3s50ms 1s955ms 4s249ms 6s929ms 10 24 0ms 30s610ms 6s133ms 6s31ms 10s394ms 51s976ms 11 17 0ms 17m2s 1m2s 3s992ms 5s421ms 17m2s 12 10 0ms 4s442ms 2s383ms 1s261ms 2s220ms 12s330ms 13 8 0ms 12s541ms 5s93ms 2s2ms 6s286ms 12s541ms 14 25 0ms 30s670ms 5s86ms 4s322ms 6s727ms 48s337ms 15 41 0ms 3m24s 18s823ms 1m5s 1m18s 3m36s 16 54 0ms 1m38s 12s734ms 1m1s 1m16s 2m2s 17 61 0ms 21m15s 1m32s 2m59s 10m48s 37m49s 18 88 0ms 33m58s 35s153ms 44s930ms 52s177ms 34m10s 19 23 0ms 35m48s 1m37s 4s56ms 9s579ms 35m48s 20 68 0ms 35m41s 1m3s 1m49s 5m23s 35m44s 21 44 0ms 26s628ms 2s919ms 8s382ms 9s599ms 26s628ms 22 71 0ms 12m7s 22s622ms 1m1s 3m 12m10s 23 62 0ms 24m20s 36s197ms 1m20s 1m56s 24m24s Mar 28 00 23 0ms 15m12s 42s585ms 4s 6s905ms 15m18s 01 19 0ms 1h32m42s 5m41s 5s207ms 2m47s 1h32m42s 02 37 0ms 59m23s 1m46s 14s790ms 1m30s 59m33s 03 45 0ms 45m57s 1m4s 7s15ms 9s917ms 46m12s 04 12 0ms 30s298ms 13s709ms 5s53ms 28s885ms 57s939ms 05 73 0ms 1h55m8s 2m15s 41s510ms 9m9s 1h55m30s 06 44 0ms 30s546ms 4s293ms 5s231ms 29s79ms 52s130ms 07 18 0ms 6s161ms 2s855ms 4s525ms 4s799ms 8s74ms 08 26 0ms 7s94ms 2s649ms 5s171ms 7s560ms 8s888ms 09 44 0ms 4m25s 9s216ms 10s23ms 15s655ms 4m26s 10 26 0ms 30s584ms 6s462ms 9s302ms 24s306ms 52s262ms 11 28 0ms 15s342ms 3s449ms 3s998ms 8s296ms 31s728ms 12 65 0ms 1m24s 6s360ms 23s457ms 43s786ms 1m29s 13 204 0ms 33m29s 15s281ms 30s540ms 32s957ms 33m42s 14 50 0ms 17m22s 29s972ms 18s488ms 1m48s 17m22s 15 42 0ms 34s950ms 3s238ms 4s685ms 9s371ms 34s950ms 16 29 0ms 19s195ms 2s843ms 3s405ms 5s936ms 19s195ms 17 18 0ms 11s871ms 2s953ms 3s919ms 6s482ms 11s871ms 18 13 0ms 30s883ms 8s601ms 4s35ms 8s317ms 52s11ms 19 15 0ms 39s639ms 9s281ms 5s42ms 27s910ms 1m13s 20 14 0ms 41s860ms 8s938ms 1s953ms 2s683ms 1m46s 21 22 0ms 5s802ms 3s55ms 5s56ms 5s802ms 8s238ms 22 22 0ms 4s883ms 2s91ms 3s302ms 4s883ms 9s754ms 23 58 0ms 6s886ms 3s374ms 8s817ms 14s730ms 38s615ms Mar 29 00 53 0ms 14m55s 18s744ms 6s190ms 9s930ms 14m57s 01 23 0ms 7s44ms 2s358ms 4s562ms 5s301ms 7s44ms 02 81 0ms 10s655ms 2s314ms 9s921ms 10s924ms 24s242ms 03 36 0ms 9s527ms 2s718ms 8s40ms 8s781ms 9s527ms 04 76 0ms 5m6s 5s799ms 6s690ms 12s942ms 5m6s 05 96 0ms 56s608ms 2s579ms 14s770ms 23s166ms 56s608ms 06 27 0ms 30s636ms 5s19ms 3s994ms 9s353ms 52s312ms 07 34 0ms 8s112ms 1s843ms 3s18ms 5s435ms 8s968ms 08 26 0ms 3s292ms 1s585ms 2s496ms 2s966ms 4s483ms 09 27 0ms 12s260ms 2s874ms 4s99ms 6s224ms 12s260ms 10 30 0ms 30s639ms 4s448ms 4s542ms 10s140ms 51s970ms 11 21 0ms 4s997ms 1s695ms 2s265ms 3s104ms 7s193ms 12 657 0ms 18m14s 12s811ms 9m39s 23m13s 28m11s 13 32 0ms 4m17s 10s343ms 9s802ms 10s97ms 4m20s 14 53 0ms 31s115ms 3s406ms 5s520ms 11s729ms 52s237ms 15 35 0ms 5s965ms 2s60ms 3s334ms 5s724ms 7s252ms 16 85 0ms 44s982ms 2s826ms 12s440ms 19s646ms 44s982ms 17 42 0ms 6s863ms 2s144ms 4s845ms 5s466ms 11s476ms 18 46 0ms 30s656ms 3s486ms 6s887ms 37s135ms 51s982ms 19 32 0ms 19s437ms 2s820ms 4s637ms 7s294ms 19s437ms 20 34 0ms 19s739ms 3s49ms 4s44ms 5s14ms 22s19ms 21 34 0ms 24s312ms 3s527ms 6s365ms 19s635ms 26s198ms 22 37 0ms 15s697ms 1s813ms 4s626ms 6s54ms 17s983ms 23 38 0ms 11s194ms 1s803ms 3s910ms 5s172ms 11s194ms Mar 30 00 83 0ms 17m19s 14s779ms 14s606ms 30s90ms 17m25s 01 143 0ms 17m26s 14s41ms 1m16s 1m39s 17m26s 02 47 0ms 5s990ms 2s198ms 4s824ms 8s958ms 11s973ms 03 39 0ms 5s904ms 1s717ms 3s533ms 5s184ms 11s785ms 04 19 0ms 4s804ms 1s538ms 2s292ms 4s782ms 4s804ms 05 94 0ms 6s188ms 2s13ms 8s787ms 21s304ms 23s468ms 06 37 0ms 5s643ms 1s438ms 3s442ms 4s99ms 5s643ms 07 49 0ms 1m2s 3s121ms 4s639ms 7s272ms 1m4s 08 141 0ms 8s487ms 2s109ms 9s791ms 10s408ms 23s816ms 09 192 0ms 5s997ms 2s60ms 15s224ms 15s785ms 19s656ms 10 197 0ms 3s494ms 2s51ms 11s901ms 13s697ms 18s34ms 11 219 0ms 9s632ms 2s232ms 14s304ms 15s994ms 20s94ms 12 284 0ms 10s131ms 2s335ms 22s694ms 23s155ms 25s851ms 13 343 1s43ms 6s26ms 2s292ms 22s115ms 23s603ms 28s977ms 14 26 0ms 12s790ms 2s615ms 4s816ms 5s266ms 14s158ms 15 381 0ms 18s137ms 2s375ms 28s729ms 33s144ms 43s926ms 16 422 0ms 6s973ms 2s283ms 27s99ms 33s863ms 49s418ms 17 24 0ms 12s855ms 2s133ms 4s247ms 5s449ms 12s855ms 18 62 0ms 1m11s 6s303ms 41s438ms 49s746ms 1m22s 19 117 0ms 23m15s 41s179ms 2m4s 7m9s 24m6s 20 103 0ms 11s573ms 2s157ms 9s149ms 11s335ms 17s788ms 21 35 0ms 35s973ms 3s201ms 5s107ms 12s111ms 42s212ms 22 43 0ms 17m7s 25s360ms 3s996ms 10s293ms 17m7s 23 15 0ms 11m2s 45s380ms 2s274ms 2s799ms 11m2s Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Mar 24 00 7 0 2m10s 0ms 1s318ms 14m54s 01 7 0 5s275ms 0ms 3s981ms 12s685ms 02 15 0 2s35ms 1s376ms 2s487ms 6s416ms 03 20 0 3s119ms 1s238ms 4s354ms 18s53ms 04 20 0 3s523ms 1s307ms 5s808ms 17s901ms 05 57 0 2s690ms 5s274ms 14s80ms 22s649ms 06 15 10 5s940ms 2s156ms 9s328ms 51s994ms 07 4 0 1s630ms 0ms 0ms 1s378ms 08 8 0 3s151ms 0ms 1s200ms 4s370ms 09 11 0 3s690ms 2s125ms 4s59ms 6s785ms 10 10 10 6s459ms 1s826ms 5s114ms 51s889ms 11 12 0 2s706ms 0ms 3s885ms 5s639ms 12 5 0 3s54ms 0ms 1s195ms 5s936ms 13 13 0 1m22s 1s136ms 2s496ms 17m28s 14 10 10 6s866ms 1s403ms 6s460ms 51s935ms 15 4 0 2s249ms 0ms 0ms 5s18ms 16 7 0 3s73ms 0ms 3s18ms 4s690ms 17 13 0 2s743ms 1s339ms 3s498ms 6s260ms 18 5 10 7s664ms 0ms 4s934ms 52s42ms 19 7 0 3s471ms 0ms 1s771ms 12s135ms 20 16 0 7s315ms 3s990ms 5s84ms 38s988ms 21 16 0 9s816ms 1s260ms 5s392ms 1m56s 22 20 0 5s100ms 1s289ms 3s339ms 15s423ms 23 16 0 4s83ms 1s141ms 4s391ms 25s183ms Mar 25 00 10 0 1m32s 1s24ms 3s99ms 14m53s 01 11 0 2s185ms 0ms 2s664ms 4s63ms 02 9 0 2s416ms 1s15ms 1s398ms 4s813ms 03 13 0 3s140ms 1s288ms 4s33ms 12s95ms 04 27 0 5s612ms 3s535ms 6s310ms 36s867ms 05 61 0 2s215ms 4s32ms 10s325ms 23s938ms 06 26 10 21s215ms 4s121ms 12s100ms 1m4s 07 49 0 7s920ms 12s151ms 15s245ms 48s923ms 08 23 0 24s344ms 2s569ms 5s274ms 8m25s 09 24 0 2s862ms 2s200ms 3s956ms 17s958ms 10 16 10 5s604ms 3s81ms 6s384ms 52s186ms 11 54 0 6s459ms 6s685ms 10s630ms 23s523ms 12 30 0 2s896ms 2s123ms 5s709ms 12s103ms 13 18 0 3s200ms 1s142ms 4s992ms 13s140ms 14 23 9 4s799ms 2s192ms 7s980ms 51s877ms 15 17 0 2s557ms 1s245ms 1s978ms 6s864ms 16 19 0 1s898ms 1s378ms 2s748ms 4s728ms 17 30 0 2s63ms 2s307ms 2s944ms 11s456ms 18 23 10 4s487ms 2s640ms 8s242ms 51s972ms 19 25 0 2s154ms 2s395ms 5s297ms 6s764ms 20 44 0 5s191ms 12s131ms 13s329ms 49s246ms 21 52 0 4s280ms 3s914ms 24s433ms 28s816ms 22 34 0 2s278ms 2s236ms 2s938ms 9s829ms 23 15 0 2s452ms 1s456ms 2s257ms 6s755ms Mar 26 00 13 0 1m11s 1s209ms 2s290ms 14m57s 01 13 0 3s187ms 1s272ms 2s541ms 12s811ms 02 13 0 1s965ms 1s95ms 1s251ms 4s851ms 03 25 0 2s189ms 2s719ms 4s778ms 8s66ms 04 26 0 2s805ms 4s41ms 5s85ms 10s853ms 05 53 0 2s192ms 3s637ms 6s688ms 23s36ms 06 18 10 6s782ms 3s110ms 4s907ms 52s719ms 07 42 0 1s923ms 3s994ms 4s966ms 7s275ms 08 15 0 25s766ms 1s50ms 2s879ms 5m55s 09 24 0 3s243ms 2s745ms 5s607ms 10s346ms 10 19 9 5s271ms 4s282ms 6s647ms 51s887ms 11 15 0 3s632ms 1s243ms 4s87ms 12s166ms 12 17 0 3s590ms 2s440ms 4s61ms 14s386ms 13 15 0 3s582ms 1s379ms 6s888ms 14s108ms 14 21 10 4s239ms 2s325ms 5s541ms 52s50ms 15 12 0 4s920ms 0ms 1s247ms 17s921ms 16 14 0 4s163ms 0ms 4s141ms 14s57ms 17 12 0 3s17ms 0ms 2s703ms 14s16ms 18 4 9 8s388ms 0ms 5s125ms 51s910ms 19 8 0 2s229ms 0ms 1s239ms 5s328ms 20 12 0 3s177ms 0ms 2s 14s76ms 21 12 0 2s411ms 0ms 2s180ms 14s30ms 22 4 0 2s341ms 0ms 1s243ms 3s983ms 23 17 0 7s679ms 0ms 6s986ms 1m27s Mar 27 00 5 0 3m 0ms 1s243ms 14m55s 01 11 0 4s638ms 1s253ms 4s207ms 17s420ms 02 9 0 1s634ms 0ms 1s288ms 5s256ms 03 9 0 2s573ms 1s127ms 2s365ms 7s964ms 04 11 0 2s239ms 1s185ms 2s592ms 5s496ms 05 46 0 2s205ms 2s77ms 8s514ms 22s770ms 06 25 10 5s397ms 4s13ms 9s309ms 52s34ms 07 5 0 1s427ms 0ms 1s71ms 2s166ms 08 22 0 5s120ms 4s63ms 6s935ms 27s705ms 09 7 0 3s50ms 0ms 1s955ms 6s929ms 10 13 10 6s258ms 1s450ms 6s31ms 37s71ms 11 17 0 1m2s 1s277ms 3s992ms 8s229ms 12 7 0 2s148ms 0ms 1s261ms 4s318ms 13 7 0 4s277ms 0ms 1s579ms 12s541ms 14 16 9 5s86ms 2s373ms 4s322ms 48s337ms 15 41 0 18s823ms 22s712ms 1m5s 3m36s 16 34 0 15s466ms 5s607ms 1m 1m14s 17 21 0 2m19s 1s403ms 4s68ms 10m1s 18 49 10 51s303ms 11s22ms 42s354ms 9m27s 19 8 0 4m35s 0ms 2s63ms 35m48s 20 14 0 3m43s 2s164ms 56s139ms 6m24s 21 14 0 4s226ms 1s273ms 1s515ms 26s628ms 22 34 0 14s708ms 8s120ms 49s842ms 2m59s 23 20 0 3s737ms 1s718ms 4s130ms 6s568ms Mar 28 00 17 0 56s490ms 1s427ms 4s 6s986ms 01 16 0 6m34s 1s810ms 4s136ms 11m46s 02 24 0 2m36s 2s327ms 4s403ms 2m13s 03 38 0 2s626ms 2s170ms 6s484ms 9s917ms 04 11 0 14s754ms 0ms 4s132ms 57s939ms 05 53 0 3m6s 17s414ms 41s510ms 1h55m30s 06 20 10 5s138ms 1s283ms 5s52ms 37s38ms 07 14 0 3s17ms 1s219ms 4s525ms 6s161ms 08 19 0 2s741ms 1s398ms 3s994ms 7s94ms 09 40 0 9s914ms 3s311ms 10s23ms 4m26s 10 11 10 7s492ms 1s442ms 9s302ms 52s262ms 11 23 0 3s659ms 1s195ms 3s998ms 31s728ms 12 65 0 6s360ms 6s868ms 23s457ms 1m17s 13 204 0 15s281ms 27s407ms 30s540ms 3m35s 14 22 10 45s500ms 3s797ms 18s488ms 2m28s 15 19 0 4s390ms 1s235ms 4s208ms 9s903ms 16 9 0 4s237ms 0ms 1s377ms 5s936ms 17 11 0 3s505ms 1s107ms 2s236ms 11s871ms 18 4 9 8s601ms 0ms 4s35ms 52s11ms 19 14 0 9s812ms 3s983ms 5s42ms 1m13s 20 11 0 10s711ms 1s51ms 1s137ms 1m46s 21 19 0 3s200ms 3s978ms 5s56ms 8s238ms 22 16 0 1s932ms 1s130ms 1s641ms 9s754ms 23 58 0 3s374ms 5s237ms 8s817ms 28s778ms Mar 29 00 52 0 19s5ms 4s926ms 5s583ms 14m57s 01 23 0 2s358ms 2s500ms 4s562ms 7s44ms 02 81 0 2s314ms 6s369ms 9s921ms 11s223ms 03 36 0 2s718ms 3s574ms 8s40ms 8s919ms 04 76 0 5s799ms 4s898ms 6s690ms 13s86ms 05 92 0 2s593ms 6s180ms 14s770ms 56s608ms 06 16 10 5s130ms 1s290ms 3s994ms 37s123ms 07 31 0 1s783ms 2s217ms 2s978ms 8s112ms 08 21 0 1s414ms 1s657ms 2s419ms 2s966ms 09 24 0 2s940ms 2s563ms 4s99ms 12s260ms 10 20 10 4s448ms 2s232ms 4s542ms 51s970ms 11 21 0 1s695ms 1s823ms 2s265ms 7s193ms 12 650 0 12s925ms 4m22s 9m39s 28m11s 13 30 0 10s860ms 2s247ms 9s802ms 4m20s 14 30 9 3s921ms 2s266ms 5s520ms 37s636ms 15 12 0 1s593ms 0ms 1s350ms 2s235ms 16 57 0 3s96ms 4s882ms 11s988ms 44s982ms 17 16 0 1s981ms 1s227ms 2s351ms 6s863ms 18 30 9 3s661ms 3s417ms 6s887ms 51s982ms 19 24 0 2s948ms 2s253ms 2s422ms 19s437ms 20 27 0 3s215ms 2s326ms 3s927ms 19s344ms 21 28 0 3s779ms 2s359ms 6s365ms 24s312ms 22 37 0 1s813ms 2s246ms 4s626ms 17s983ms 23 38 0 1s803ms 2s523ms 3s910ms 11s194ms Mar 30 00 82 0 14s896ms 7s575ms 14s606ms 17m20s 01 142 0 14s125ms 15s154ms 1m16s 17m26s 02 40 0 2s162ms 3s27ms 4s72ms 11s973ms 03 36 0 1s598ms 2s283ms 3s126ms 11s785ms 04 19 0 1s538ms 1s400ms 2s292ms 4s804ms 05 62 0 1s886ms 2s241ms 8s485ms 23s468ms 06 36 0 1s428ms 2s269ms 3s442ms 5s643ms 07 27 0 3s744ms 2s271ms 4s102ms 1m2s 08 30 0 1s618ms 2s244ms 2s469ms 7s62ms 09 47 0 1s460ms 1s454ms 2s681ms 7s90ms 10 44 0 1s276ms 2s238ms 3s20ms 4s614ms 11 30 0 2s38ms 1s849ms 2s642ms 9s558ms 12 43 0 2s638ms 2s345ms 7s108ms 14s238ms 13 33 0 2s176ms 1s516ms 4s824ms 8s843ms 14 26 0 2s615ms 2s336ms 4s816ms 14s158ms 15 38 0 2s807ms 2s250ms 7s438ms 14s251ms 16 32 0 1s992ms 2s236ms 3s231ms 6s973ms 17 24 0 2s133ms 3s207ms 4s247ms 12s855ms 18 40 22 6s303ms 11s691ms 39s139ms 1m20s 19 26 45 1m6s 1m11s 1m55s 23m5s 20 46 0 2s25ms 2s525ms 4s443ms 11s573ms 21 35 0 3s201ms 2s217ms 5s107ms 14s599ms 22 43 0 25s360ms 2s251ms 3s996ms 17m7s 23 15 0 45s380ms 2s199ms 2s274ms 11m2s Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Mar 24 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Mar 25 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Mar 26 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Mar 27 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 1 0 0 0 10s808ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 12 0 0 0 3m42s 0ms 0ms 3m32s 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 15 9 0 0 1m27s 0ms 0ms 1m56s Mar 28 00 0 0 0 0 0ms 0ms 0ms 0ms 01 1 0 0 0 2m40s 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Mar 29 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Mar 30 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Mar 24 00 0 6 6.00 0.00% 01 0 7 7.00 0.00% 02 0 15 15.00 0.00% 03 0 20 20.00 0.00% 04 0 20 20.00 0.00% 05 0 61 61.00 0.00% 06 0 16 16.00 0.00% 07 0 5 5.00 0.00% 08 0 11 11.00 0.00% 09 0 11 11.00 0.00% 10 0 10 10.00 0.00% 11 0 12 12.00 0.00% 12 0 5 5.00 0.00% 13 0 13 13.00 0.00% 14 0 10 10.00 0.00% 15 0 4 4.00 0.00% 16 0 10 10.00 0.00% 17 0 13 13.00 0.00% 18 0 5 5.00 0.00% 19 0 7 7.00 0.00% 20 0 16 16.00 0.00% 21 0 19 19.00 0.00% 22 0 20 20.00 0.00% 23 0 16 16.00 0.00% Mar 25 00 0 9 9.00 0.00% 01 0 11 11.00 0.00% 02 0 9 9.00 0.00% 03 0 13 13.00 0.00% 04 0 27 27.00 0.00% 05 0 65 65.00 0.00% 06 0 28 28.00 0.00% 07 0 51 51.00 0.00% 08 0 23 23.00 0.00% 09 0 27 27.00 0.00% 10 0 17 17.00 0.00% 11 0 55 55.00 0.00% 12 0 30 30.00 0.00% 13 0 21 21.00 0.00% 14 0 29 29.00 0.00% 15 0 27 27.00 0.00% 16 0 19 19.00 0.00% 17 0 31 31.00 0.00% 18 0 23 23.00 0.00% 19 0 25 25.00 0.00% 20 0 45 45.00 0.00% 21 0 52 52.00 0.00% 22 0 34 34.00 0.00% 23 0 15 15.00 0.00% Mar 26 00 0 12 12.00 0.00% 01 0 13 13.00 0.00% 02 0 13 13.00 0.00% 03 0 25 25.00 0.00% 04 0 26 26.00 0.00% 05 0 57 57.00 0.00% 06 0 18 18.00 0.00% 07 0 42 42.00 0.00% 08 0 17 17.00 0.00% 09 0 30 30.00 0.00% 10 0 19 19.00 0.00% 11 0 19 19.00 0.00% 12 0 17 17.00 0.00% 13 0 15 15.00 0.00% 14 0 21 21.00 0.00% 15 0 12 12.00 0.00% 16 0 14 14.00 0.00% 17 0 12 12.00 0.00% 18 0 4 4.00 0.00% 19 0 8 8.00 0.00% 20 0 12 12.00 0.00% 21 0 12 12.00 0.00% 22 0 4 4.00 0.00% 23 0 17 17.00 0.00% Mar 27 00 0 5 5.00 0.00% 01 0 11 11.00 0.00% 02 0 9 9.00 0.00% 03 0 9 9.00 0.00% 04 0 11 11.00 0.00% 05 0 50 50.00 0.00% 06 0 29 29.00 0.00% 07 0 5 5.00 0.00% 08 0 22 22.00 0.00% 09 0 7 7.00 0.00% 10 0 14 14.00 0.00% 11 0 18 18.00 0.00% 12 0 6 6.00 0.00% 13 0 7 7.00 0.00% 14 0 16 16.00 0.00% 15 0 41 41.00 0.00% 16 0 51 51.00 0.00% 17 0 61 61.00 0.00% 18 0 78 78.00 0.00% 19 0 23 23.00 0.00% 20 0 68 68.00 0.00% 21 0 44 44.00 0.00% 22 0 71 71.00 0.00% 23 0 62 62.00 0.00% Mar 28 00 0 22 22.00 0.00% 01 0 19 19.00 0.00% 02 0 37 37.00 0.00% 03 0 46 46.00 0.00% 04 0 12 12.00 0.00% 05 0 73 73.00 0.00% 06 0 35 35.00 0.00% 07 0 21 21.00 0.00% 08 0 26 26.00 0.00% 09 0 27 27.00 0.00% 10 0 17 17.00 0.00% 11 0 23 23.00 0.00% 12 0 66 66.00 0.00% 13 0 233 233.00 0.00% 14 0 42 42.00 0.00% 15 0 41 41.00 0.00% 16 0 36 36.00 0.00% 17 0 19 19.00 0.00% 18 0 4 4.00 0.00% 19 0 15 15.00 0.00% 20 0 14 14.00 0.00% 21 0 22 22.00 0.00% 22 0 22 22.00 0.00% 23 0 58 58.00 0.00% Mar 29 00 0 51 51.00 0.00% 01 0 23 23.00 0.00% 02 0 81 81.00 0.00% 03 0 36 36.00 0.00% 04 0 76 76.00 0.00% 05 0 96 96.00 0.00% 06 0 23 23.00 0.00% 07 0 36 36.00 0.00% 08 0 27 27.00 0.00% 09 0 28 28.00 0.00% 10 0 20 20.00 0.00% 11 0 22 22.00 0.00% 12 0 663 663.00 0.00% 13 0 32 32.00 0.00% 14 0 48 48.00 0.00% 15 0 45 45.00 0.00% 16 0 86 86.00 0.00% 17 0 42 42.00 0.00% 18 0 37 37.00 0.00% 19 0 32 32.00 0.00% 20 0 34 34.00 0.00% 21 0 34 34.00 0.00% 22 0 37 37.00 0.00% 23 0 38 38.00 0.00% Mar 30 00 0 82 82.00 0.00% 01 0 143 143.00 0.00% 02 0 47 47.00 0.00% 03 0 39 39.00 0.00% 04 0 19 19.00 0.00% 05 0 94 94.00 0.00% 06 0 37 37.00 0.00% 07 0 49 49.00 0.00% 08 0 141 141.00 0.00% 09 0 192 192.00 0.00% 10 0 200 200.00 0.00% 11 0 221 221.00 0.00% 12 0 293 293.00 0.00% 13 0 343 343.00 0.00% 14 0 26 26.00 0.00% 15 0 381 381.00 0.00% 16 0 422 422.00 0.00% 17 0 26 26.00 0.00% 18 0 40 40.00 0.00% 19 0 72 72.00 0.00% 20 0 103 103.00 0.00% 21 0 35 35.00 0.00% 22 0 43 43.00 0.00% 23 0 15 15.00 0.00% Day Hour Count Average / Second Mar 24 00 529 0.15/s 01 536 0.15/s 02 536 0.15/s 03 529 0.15/s 04 532 0.15/s 05 541 0.15/s 06 526 0.15/s 07 528 0.15/s 08 533 0.15/s 09 532 0.15/s 10 529 0.15/s 11 533 0.15/s 12 532 0.15/s 13 527 0.15/s 14 539 0.15/s 15 531 0.15/s 16 525 0.15/s 17 527 0.15/s 18 529 0.15/s 19 526 0.15/s 20 560 0.16/s 21 532 0.15/s 22 603 0.17/s 23 540 0.15/s Mar 25 00 530 0.15/s 01 528 0.15/s 02 528 0.15/s 03 532 0.15/s 04 567 0.16/s 05 552 0.15/s 06 571 0.16/s 07 637 0.18/s 08 532 0.15/s 09 533 0.15/s 10 531 0.15/s 11 536 0.15/s 12 533 0.15/s 13 524 0.15/s 14 534 0.15/s 15 529 0.15/s 16 533 0.15/s 17 528 0.15/s 18 530 0.15/s 19 526 0.15/s 20 531 0.15/s 21 546 0.15/s 22 533 0.15/s 23 531 0.15/s Mar 26 00 529 0.15/s 01 534 0.15/s 02 532 0.15/s 03 530 0.15/s 04 526 0.15/s 05 537 0.15/s 06 532 0.15/s 07 532 0.15/s 08 530 0.15/s 09 536 0.15/s 10 529 0.15/s 11 527 0.15/s 12 528 0.15/s 13 525 0.15/s 14 530 0.15/s 15 528 0.15/s 16 529 0.15/s 17 532 0.15/s 18 531 0.15/s 19 531 0.15/s 20 527 0.15/s 21 519 0.14/s 22 527 0.15/s 23 534 0.15/s Mar 27 00 526 0.15/s 01 529 0.15/s 02 535 0.15/s 03 526 0.15/s 04 529 0.15/s 05 551 0.15/s 06 535 0.15/s 07 526 0.15/s 08 531 0.15/s 09 532 0.15/s 10 548 0.15/s 11 536 0.15/s 12 546 0.15/s 13 526 0.15/s 14 530 0.15/s 15 598 0.17/s 16 574 0.16/s 17 539 0.15/s 18 543 0.15/s 19 528 0.15/s 20 544 0.15/s 21 531 0.15/s 22 558 0.15/s 23 543 0.15/s Mar 28 00 546 0.15/s 01 530 0.15/s 02 536 0.15/s 03 719 0.20/s 04 606 0.17/s 05 639 0.18/s 06 563 0.16/s 07 531 0.15/s 08 526 0.15/s 09 543 0.15/s 10 530 0.15/s 11 552 0.15/s 12 537 0.15/s 13 525 0.15/s 14 538 0.15/s 15 538 0.15/s 16 527 0.15/s 17 525 0.15/s 18 529 0.15/s 19 529 0.15/s 20 530 0.15/s 21 529 0.15/s 22 532 0.15/s 23 819 0.23/s Mar 29 00 548 0.15/s 01 540 0.15/s 02 543 0.15/s 03 582 0.16/s 04 544 0.15/s 05 549 0.15/s 06 534 0.15/s 07 534 0.15/s 08 532 0.15/s 09 525 0.15/s 10 531 0.15/s 11 525 0.15/s 12 568 0.16/s 13 523 0.15/s 14 524 0.15/s 15 527 0.15/s 16 570 0.16/s 17 527 0.15/s 18 523 0.15/s 19 565 0.16/s 20 570 0.16/s 21 597 0.17/s 22 551 0.15/s 23 532 0.15/s Mar 30 00 543 0.15/s 01 563 0.16/s 02 535 0.15/s 03 527 0.15/s 04 519 0.14/s 05 546 0.15/s 06 526 0.15/s 07 524 0.15/s 08 531 0.15/s 09 528 0.15/s 10 546 0.15/s 11 554 0.15/s 12 600 0.17/s 13 568 0.16/s 14 556 0.15/s 15 559 0.16/s 16 572 0.16/s 17 523 0.15/s 18 535 0.15/s 19 549 0.15/s 20 546 0.15/s 21 597 0.17/s 22 587 0.16/s 23 522 0.14/s Day Hour Count Average Duration Average idle time Mar 24 00 529 4m33s 4m31s 01 536 4m27s 4m27s 02 536 4m34s 4m34s 03 529 4m32s 4m31s 04 532 4m27s 4m27s 05 541 4m24s 4m24s 06 526 4m14s 4m14s 07 528 4m35s 4m35s 08 533 4m30s 4m30s 09 532 4m40s 4m40s 10 529 4m35s 4m35s 11 533 4m33s 4m33s 12 532 4m34s 4m34s 13 527 4m37s 4m35s 14 539 4m20s 4m20s 15 531 4m42s 4m42s 16 525 4m30s 4m30s 17 527 4m39s 4m39s 18 529 4m35s 4m34s 19 526 4m21s 4m21s 20 560 4m20s 4m20s 21 532 4m23s 4m23s 22 603 3m51s 3m51s 23 540 4m27s 4m27s Mar 25 00 530 4m41s 4m39s 01 528 4m39s 4m39s 02 528 4m31s 4m31s 03 532 4m35s 4m35s 04 567 4m8s 4m8s 05 551 4m3s 4m3s 06 572 4m19s 4m18s 07 637 3m44s 3m43s 08 532 4m32s 4m31s 09 533 4m26s 4m26s 10 531 4m27s 4m27s 11 536 4m34s 4m33s 12 532 4m38s 4m38s 13 524 4m26s 4m26s 14 534 4m46s 4m46s 15 530 4m48s 4m48s 16 533 4m38s 4m38s 17 528 4m30s 4m30s 18 530 4m35s 4m35s 19 526 4m28s 4m28s 20 531 4m22s 4m21s 21 546 4m16s 4m16s 22 533 4m33s 4m33s 23 531 4m32s 4m32s Mar 26 00 529 4m39s 4m37s 01 534 4m28s 4m28s 02 532 4m38s 4m38s 03 530 4m23s 4m23s 04 526 4m18s 4m18s 05 537 4m25s 4m25s 06 532 4m30s 4m30s 07 532 4m40s 4m40s 08 530 4m29s 4m29s 09 536 4m37s 4m37s 10 529 4m32s 4m32s 11 527 4m31s 4m31s 12 528 4m42s 4m42s 13 525 4m28s 4m28s 14 530 4m37s 4m37s 15 528 4m32s 4m32s 16 529 4m37s 4m37s 17 532 4m32s 4m32s 18 531 4m39s 4m38s 19 531 4m32s 4m32s 20 527 4m32s 4m32s 21 519 4m3s 4m3s 22 527 4m32s 4m32s 23 534 4m35s 4m35s Mar 27 00 526 4m31s 4m29s 01 529 4m35s 4m35s 02 535 4m30s 4m30s 03 526 4m18s 4m18s 04 529 4m33s 4m32s 05 551 4m20s 4m20s 06 535 4m40s 4m40s 07 526 4m34s 4m34s 08 531 4m27s 4m27s 09 532 4m39s 4m39s 10 545 4m26s 4m26s 11 533 4m26s 4m24s 12 541 4m43s 4m43s 13 526 4m40s 4m40s 14 530 4m35s 4m35s 15 598 4m4s 4m2s 16 573 4m15s 4m14s 17 539 4m32s 4m22s 18 543 4m35s 4m29s 19 530 6m27s 6m23s 20 545 51m20s 51m12s 21 531 4m19s 4m18s 22 558 4m21s 4m18s 23 543 4m33s 4m28s Mar 28 00 546 4m20s 4m18s 01 530 4m32s 4m20s 02 536 4m55s 4m48s 03 719 3m22s 3m18s 04 606 3m57s 3m57s 05 640 4m25s 4m9s 06 563 4m16s 4m16s 07 531 4m34s 4m33s 08 526 4m37s 4m37s 09 543 4m28s 4m27s 10 529 4m28s 4m28s 11 552 4m53s 4m53s 12 536 3m59s 3m58s 13 525 4m18s 4m12s 14 538 4m26s 4m23s 15 535 4m37s 4m37s 16 527 4m42s 4m42s 17 527 5m36s 5m36s 18 529 4m37s 4m37s 19 529 4m36s 4m36s 20 530 4m32s 4m32s 21 529 4m32s 4m32s 22 532 4m38s 4m38s 23 819 2m51s 2m51s Mar 29 00 548 4m37s 4m35s 01 540 4m27s 4m27s 02 548 25m20s 25m20s 03 587 20m10s 20m10s 04 545 4m5s 4m4s 05 549 4m24s 4m23s 06 534 4m24s 4m23s 07 534 4m37s 4m37s 08 532 4m23s 4m23s 09 525 4m34s 4m34s 10 531 4m33s 4m33s 11 525 4m36s 4m36s 12 567 4m11s 3m56s 13 524 4m42s 4m41s 14 524 4m27s 4m26s 15 527 4m36s 4m36s 16 570 4m15s 4m15s 17 527 4m35s 4m35s 18 523 4m19s 4m19s 19 565 4m41s 4m41s 20 570 4m10s 4m10s 21 597 3m49s 3m49s 22 551 4m19s 4m19s 23 532 4m29s 4m29s Mar 30 00 543 4m47s 4m45s 01 563 4m9s 4m6s 02 535 4m29s 4m28s 03 527 4m35s 4m34s 04 519 4m11s 4m11s 05 546 5m9s 5m9s 06 526 4m28s 4m28s 07 524 4m9s 4m8s 08 531 4m40s 4m39s 09 528 4m14s 4m13s 10 546 4m17s 4m17s 11 554 4m20s 4m19s 12 600 4m15s 4m14s 13 568 4m5s 4m4s 14 556 4m22s 4m21s 15 559 4m24s 4m22s 16 572 4m16s 4m14s 17 523 4m29s 4m29s 18 534 4m32s 4m31s 19 550 4m27s 4m19s 20 546 4m21s 4m21s 21 596 3m58s 3m58s 22 588 4m5s 4m3s 23 521 4m25s 4m24s -
Connections
Established Connections
Key values
- 104 connections Connection Peak
- 2024-03-28 03:23:12 Date
Connections per database
Key values
- postgres Main Database
- 91,188 connections Total
Connections per user
Key values
- postgres Main User
- 91,188 connections Total
-
Sessions
Simultaneous sessions
Key values
- 181 sessions Session Peak
- 2024-03-28 03:24:12 Date
Histogram of session times
Key values
- 76,469 0-500ms duration
Sessions per database
Key values
- postgres Main Database
- 91,187 sessions Total
Sessions per user
Key values
- postgres Main User
- 91,187 sessions Total
User Count Total Duration Average Duration edit 3 4d18h59m8s 1d14h19m42s editeu 2,595 56d1h8m13s 31m6s load 180 5d35m57s 40m11s postgres 75,651 2h11m2s 103ms pub1 27 1d21h15m7s 1h40m33s pub2 13 4d20h40m11s 8h58m28s pubc 11 1h47m49s 9m48s pubeu 7,368 112d6h5m46s 21m56s qaeu 5,334 112d1h14m21s 30m15s zbx_monitor 5 17d12h20s 3d12h4s Sessions per host
Key values
- [local] Main Host
- 91,187 sessions Total
Host Count Total Duration Average Duration 10.12.5.36 38 2h8s 3m9s 10.12.5.37 4,759 56d8h30m7s 17m3s 10.12.5.38 2,624 55d23h22m44s 30m43s 10.12.5.39 2,592 56d1h8m13s 31m8s 10.12.5.40 182 13h51m19s 4m34s 10.12.5.45 2,683 55d23h53m45s 30m3s 10.12.5.46 2,633 55d23h23m42s 30m36s 192.168.201.10 13 14d12h39m23s 1d2h49m11s 192.168.202.6 7 1d10h57m11s 4h59m35s ::1 392 17d14h7m52s 1h4m36s [local] 75,264 3m30s 2ms Sessions per application
Key values
- psql Main Application
- 91,187 sessions Total
-
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 4,857,166 buffers Checkpoint Peak
- 2024-03-27 23:15:15 Date
- 1620.068 seconds Highest write time
- 0.892 seconds Sync time
Checkpoints Wal files
Key values
- 842 files Wal files usage Peak
- 2024-03-28 02:37:40 Date
Checkpoints distance
Key values
- 17,784.90 Mo Distance Peak
- 2024-03-28 03:02:51 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Mar 24 00 1,671 167.621s 0.003s 167.703s 01 104 10.611s 0.002s 10.642s 02 517 51.992s 0.003s 52.072s 03 98 10.004s 0.002s 10.036s 04 171 17.331s 0.002s 17.361s 05 1,580 158.52s 0.002s 158.551s 06 313 31.555s 0.002s 31.585s 07 313 31.558s 0.002s 31.588s 08 5,735 574.484s 0.003s 574.57s 09 1,341 134.561s 0.002s 134.642s 10 63 6.491s 0.002s 6.52s 11 135 13.708s 0.002s 13.738s 12 144 14.618s 0.002s 14.65s 13 49 5.092s 0.002s 5.122s 14 54 5.59s 0.002s 5.622s 15 99 10.109s 0.002s 10.138s 16 347 34.963s 0.002s 34.994s 17 212 21.446s 0.002s 21.476s 18 75 7.716s 0.002s 7.747s 19 53 5.488s 0.002s 5.518s 20 5,641 565.247s 0.01s 565.328s 21 2,625 263.153s 0.002s 263.195s 22 132 13.421s 0.002s 13.451s 23 21,585 1,624.049s 0.003s 1,624.419s Mar 25 00 262,717 1,658.733s 0.004s 1,658.817s 01 23 2.482s 0.002s 2.514s 02 73,427 2,251.328s 0.003s 2,251.964s 03 131 13.317s 0.002s 13.348s 04 4,196 420.553s 0.003s 421.034s 05 102,601 1,626.29s 0.002s 1,626.792s 06 662 66.53s 0.003s 66.609s 07 369 37.206s 0.002s 37.237s 08 486 48.912s 0.002s 48.943s 09 101,919 1,632.798s 0.003s 1,633.555s 10 102,298 1,630.159s 0.003s 1,631.061s 11 57,104 2,079.956s 0.003s 2,080.461s 12 4,553 456.193s 0.002s 456.223s 13 419 42.237s 0.002s 42.313s 14 154 15.615s 0.003s 15.646s 15 5,893 590.422s 0.002s 590.522s 16 332 33.459s 0.002s 33.488s 17 144 14.619s 0.002s 14.65s 18 69 7.096s 0.002s 7.126s 19 60 6.193s 0.003s 6.223s 20 1,794 179.945s 0.002s 180.021s 21 1,418 142.268s 0.002s 142.299s 22 1,845 185.115s 0.002s 185.191s 23 15,412 1,543.603s 0.004s 1,543.836s Mar 26 00 3,678 368.745s 0.003s 368.815s 01 156 15.716s 0.002s 15.747s 02 2,346 235.252s 0.009s 235.334s 03 2,956 296.24s 0.003s 296.319s 04 212 21.437s 0.002s 21.468s 05 41,808 2,402.274s 0.004s 2,402.662s 06 312 31.358s 0.002s 31.389s 07 731 73.436s 0.003s 73.466s 08 6,023 603.369s 0.003s 603.481s 09 1,643 164.836s 0.003s 164.866s 10 5,768 577.876s 0.003s 577.969s 11 321 32.352s 0.002s 32.384s 12 2,015 202.067s 0.002s 202.144s 13 6,059 607.13s 0.004s 607.233s 14 1,883 188.846s 0.003s 188.923s 15 421 42.364s 0.002s 42.393s 16 205 20.724s 0.002s 20.753s 17 76 7.795s 0.003s 7.827s 18 93 9.407s 0.002s 9.439s 19 80 8.191s 0.002s 8.221s 20 158 16.003s 0.002s 16.035s 21 5,265 527.578s 0.003s 527.647s 22 2,017 202.231s 0.003s 202.288s 23 1,135 113.919s 0.003s 114.379s Mar 27 00 48,908 1,620s 0.003s 1,620.079s 01 3,071 307.816s 0.002s 307.848s 02 6,285 629.713s 0.002s 629.819s 03 1,411 141.578s 0.002s 141.656s 04 110 11.206s 0.002s 11.236s 05 721 72.483s 0.002s 72.515s 06 281 28.355s 0.002s 28.387s 07 1,096 110s 0.002s 110.075s 08 11,734 1,175.23s 0.002s 1,175.381s 09 92,015 1,964.926s 0.003s 1,965.385s 10 10,730 1,074.817s 0.004s 1,074.943s 11 6,226 623.819s 0.003s 623.922s 12 283 28.587s 0.002s 28.618s 13 22,562 1,622.719s 0.172s 1,623.302s 14 143 14.512s 0.002s 14.543s 15 231,055 1,465.514s 0.743s 1,480.764s 16 73,785 706.297s 0.079s 719.706s 17 1,983,262 2,343.944s 0.649s 2,371.812s 18 894,066 3,238.696s 0.029s 3,246.051s 19 34,234 1,632.382s 0.004s 1,632.445s 20 3,715,584 72.846s 0.295s 110.308s 21 654,006 1,623.111s 0.012s 1,629.133s 22 3,294,351 2,656.75s 0.056s 2,678.093s 23 6,380,700 1,780.697s 0.512s 1,810.82s Mar 28 00 1,318,152 3,431.983s 0.007s 3,438.974s 01 83 8.405s 0.001s 8.421s 02 834,222 3,078.822s 3.085s 3,186.096s 03 133,049 1,882.896s 1.797s 1,935.799s 04 512,485 3,239.301s 0.005s 3,244.266s 05 616,738 3,238.828s 0.098s 3,245.608s 06 454,557 1,658.006s 0.005s 1,661.703s 07 413 41.576s 0.002s 41.608s 08 2,901 290.878s 0.003s 291.009s 09 173 17.532s 0.002s 17.577s 10 25,772 1,634.222s 0.003s 1,634.286s 11 286 28.81s 0.002s 28.89s 12 20,374 1,660.303s 0.003s 1,660.369s 13 271 27.369s 0.002s 27.412s 14 242 24.446s 0.002s 24.476s 15 2,243 224.931s 0.01s 225.01s 16 625 62.834s 0.003s 62.866s 17 213 21.535s 0.002s 21.566s 18 106 10.809s 0.002s 10.84s 19 550 55.209s 0.003s 55.281s 20 73 7.504s 0.002s 7.535s 21 2,312 231.827s 0.003s 231.9s 22 2,782 278.928s 0.003s 279s 23 2,001 200.726s 0.004s 200.757s Mar 29 00 845 84.882s 0.003s 84.998s 01 250 25.246s 0.002s 25.276s 02 51,610 1,713.402s 0.002s 1,713.553s 03 555 55.81s 0.002s 55.84s 04 363 36.573s 0.002s 36.603s 05 556 55.823s 0.002s 55.855s 06 664 66.651s 0.002s 66.682s 07 50,576 1,642.513s 0.002s 1,642.642s 08 463 46.596s 0.003s 46.627s 09 711 71.442s 0.002s 71.474s 10 350 35.268s 0.002s 35.303s 11 574 57.717s 0.002s 57.788s 12 508 51.005s 0.002s 51.036s 13 416 41.878s 0.002s 41.906s 14 354 35.561s 0.002s 35.591s 15 565 56.813s 0.003s 56.844s 16 295 29.661s 0.002s 29.692s 17 2,427 243.392s 0.003s 243.425s 18 817 82.058s 0.002s 82.133s 19 555 55.716s 0.002s 55.749s 20 610 61.318s 0.002s 61.349s 21 2,014 200.809s 0.003s 200.884s 22 1,719 171.544s 0.002s 171.575s 23 677 68.037s 0.002s 68.108s Mar 30 00 6,914 692.709s 0.004s 692.749s 01 693 69.556s 0.002s 69.586s 02 530 53.307s 0.002s 53.337s 03 516 51.909s 0.003s 51.941s 04 785 78.845s 0.002s 78.877s 05 588 59.15s 0.002s 59.182s 06 5,477 548.639s 0.002s 548.729s 07 586 58.92s 0.002s 58.951s 08 426 42.884s 0.002s 42.916s 09 568 57.135s 0.002s 57.165s 10 597 60.02s 0.003s 60.05s 11 5,081 508.877s 0.002s 508.966s 12 4,642 465.012s 0.002s 465.059s 13 639 64.252s 0.003s 64.283s 14 1,952 194.296s 0.003s 194.376s 15 693 69.647s 0.003s 69.701s 16 529 53.209s 0.002s 53.24s 17 5,357 536.776s 0.003s 536.864s 18 1,335 133.882s 0.003s 133.914s 19 1,522 152.15s 0.003s 152.223s 20 21,218 1,659.026s 0.003s 1,659.071s 21 3,822 380.513s 0.004s 380.603s 22 2,536 252.723s 0.003s 252.766s 23 1,085 108.826s 0.003s 108.858s Day Hour Added Removed Recycled Synced files Longest sync Average sync Mar 24 00 0 0 0 86 0.001s 0.002s 01 0 0 0 24 0.001s 0.002s 02 0 0 1 45 0.001s 0.002s 03 0 0 0 25 0.001s 0.002s 04 0 0 0 36 0.001s 0.002s 05 0 0 0 61 0.001s 0.002s 06 0 0 0 44 0.001s 0.002s 07 0 0 0 125 0.001s 0.002s 08 0 0 4 129 0.001s 0.002s 09 0 0 1 89 0.001s 0.002s 10 0 0 0 20 0.001s 0.002s 11 0 0 0 27 0.001s 0.002s 12 0 0 0 25 0.001s 0.002s 13 0 0 0 15 0.001s 0.002s 14 0 0 0 15 0.001s 0.002s 15 0 0 0 59 0.001s 0.002s 16 0 0 0 116 0.001s 0.002s 17 0 0 0 103 0.001s 0.002s 18 0 0 0 20 0.001s 0.002s 19 0 0 0 17 0.001s 0.002s 20 0 0 3 32 0.004s 0.002s 21 0 0 1 43 0.001s 0.002s 22 0 0 0 27 0.001s 0.002s 23 0 0 26 33 0.001s 0.002s Mar 25 00 0 0 0 103 0.001s 0.002s 01 0 0 0 17 0.001s 0.002s 02 0 0 45 59 0.001s 0.002s 03 0 0 0 34 0.001s 0.002s 04 0 0 35 42 0.002s 0.002s 05 0 0 36 46 0.001s 0.002s 06 0 0 1 95 0.001s 0.002s 07 0 0 0 111 0.001s 0.002s 08 0 0 0 66 0.001s 0.002s 09 0 0 58 91 0.002s 0.002s 10 0 0 71 129 0.001s 0.002s 11 0 0 37 96 0.002s 0.002s 12 0 0 0 72 0.001s 0.002s 13 0 0 1 119 0.001s 0.002s 14 0 0 0 59 0.001s 0.002s 15 0 0 3 116 0.001s 0.002s 16 0 0 0 129 0.001s 0.002s 17 0 0 0 32 0.001s 0.002s 18 0 0 0 23 0.001s 0.002s 19 0 0 0 17 0.001s 0.002s 20 0 0 1 28 0.001s 0.002s 21 0 0 0 38 0.001s 0.002s 22 0 0 1 30 0.001s 0.002s 23 0 0 11 48 0.001s 0.002s Mar 26 00 0 0 0 88 0.001s 0.002s 01 0 0 0 33 0.001s 0.002s 02 0 0 1 61 0.002s 0.002s 03 0 0 1 59 0.001s 0.002s 04 0 0 0 30 0.001s 0.002s 05 0 0 27 67 0.001s 0.002s 06 0 0 0 37 0.001s 0.002s 07 0 0 0 74 0.001s 0.002s 08 0 0 4 90 0.001s 0.002s 09 0 0 0 140 0.001s 0.002s 10 0 0 2 130 0.001s 0.002s 11 0 0 0 79 0.001s 0.002s 12 0 0 1 84 0.001s 0.002s 13 0 0 3 80 0.001s 0.002s 14 0 0 1 85 0.001s 0.002s 15 0 0 0 34 0.001s 0.002s 16 0 0 0 24 0.001s 0.002s 17 0 0 0 17 0.001s 0.002s 18 0 0 0 21 0.001s 0.002s 19 0 0 0 19 0.001s 0.002s 20 0 0 0 24 0.001s 0.002s 21 0 0 3 38 0.001s 0.002s 22 0 0 0 29 0.001s 0.002s 23 0 0 33 35 0.001s 0.002s Mar 27 00 0 0 2 41 0.001s 0.001s 01 0 0 0 72 0.001s 0.002s 02 0 0 3 39 0.001s 0.002s 03 0 0 1 37 0.001s 0.002s 04 0 0 0 26 0.001s 0.002s 05 0 0 0 41 0.001s 0.002s 06 0 0 0 79 0.001s 0.002s 07 0 0 1 84 0.001s 0.002s 08 0 0 7 41 0.001s 0.002s 09 0 0 33 58 0.002s 0.002s 10 0 0 5 135 0.001s 0.002s 11 0 0 3 120 0.001s 0.002s 12 0 0 0 106 0.001s 0.002s 13 0 0 19 837 0.002s 0.002s 14 0 0 0 28 0.001s 0.002s 15 0 154 1,075 310 0.337s 0.01s 16 0 0 1,076 403 0.007s 0.002s 17 0 0 2,152 307 0.144s 0.012s 18 0 0 591 325 0.001s 0.002s 19 0 0 0 72 0.001s 0.003s 20 0 31 2,638 148 0.278s 0.016s 21 0 0 491 93 0.001s 0.002s 22 0 1 1,411 185 0.043s 0.003s 23 0 502 2,152 551 0.293s 0.009s Mar 28 00 0 0 578 243 0.001s 0.003s 01 0 0 0 15 0.001s 0.001s 02 0 694 7,335 888 0.891s 0.074s 03 0 246 3,556 404 0.807s 0.106s 04 0 0 390 141 0.001s 0.002s 05 0 33 538 136 0.055s 0.003s 06 0 0 303 155 0.001s 0.003s 07 0 0 0 118 0.001s 0.002s 08 0 1 0 135 0.001s 0.002s 09 0 1 0 87 0.001s 0.002s 10 0 8 0 190 0.001s 0.002s 11 0 1 0 120 0.001s 0.002s 12 0 9 0 151 0.001s 0.002s 13 0 0 0 106 0.001s 0.002s 14 0 0 0 105 0.001s 0.002s 15 0 1 0 131 0.008s 0.002s 16 0 0 0 79 0.001s 0.002s 17 0 0 0 68 0.001s 0.002s 18 0 0 0 21 0.001s 0.002s 19 0 1 0 38 0.001s 0.002s 20 0 0 0 17 0.001s 0.002s 21 0 1 0 30 0.001s 0.002s 22 0 1 0 44 0.001s 0.002s 23 0 0 0 52 0.001s 0.002s Mar 29 00 0 1 0 83 0.001s 0.002s 01 0 0 0 35 0.001s 0.002s 02 0 35 0 62 0.001s 0.002s 03 0 0 0 47 0.001s 0.002s 04 0 0 0 35 0.001s 0.002s 05 0 0 0 49 0.001s 0.002s 06 0 0 0 80 0.001s 0.002s 07 0 34 0 120 0.001s 0.002s 08 0 0 0 109 0.001s 0.002s 09 0 0 0 38 0.001s 0.002s 10 0 0 0 74 0.001s 0.002s 11 0 1 0 118 0.001s 0.002s 12 0 0 0 75 0.001s 0.002s 13 0 0 0 24 0.001s 0.002s 14 0 0 0 77 0.001s 0.002s 15 0 0 0 123 0.002s 0.002s 16 0 0 0 39 0.001s 0.002s 17 0 0 0 70 0.002s 0.002s 18 0 1 0 32 0.001s 0.002s 19 0 0 0 21 0.001s 0.002s 20 0 0 0 21 0.001s 0.002s 21 0 1 0 38 0.001s 0.002s 22 0 0 0 45 0.001s 0.002s 23 0 1 0 21 0.001s 0.002s Mar 30 00 0 2 0 75 0.002s 0.002s 01 0 0 0 39 0.001s 0.002s 02 0 0 0 36 0.001s 0.002s 03 0 0 0 28 0.001s 0.002s 04 0 0 0 36 0.001s 0.002s 05 0 0 0 37 0.001s 0.002s 06 0 4 0 39 0.001s 0.002s 07 0 0 0 30 0.001s 0.002s 08 0 0 0 28 0.001s 0.002s 09 0 0 0 28 0.001s 0.002s 10 0 0 0 27 0.002s 0.002s 11 0 4 0 87 0.001s 0.002s 12 0 3 0 117 0.001s 0.002s 13 0 0 0 64 0.002s 0.002s 14 0 1 0 38 0.002s 0.002s 15 0 0 0 42 0.001s 0.002s 16 0 0 0 20 0.001s 0.002s 17 0 4 0 77 0.002s 0.002s 18 0 0 0 131 0.001s 0.002s 19 0 0 0 39 0.001s 0.002s 20 0 1 0 35 0.002s 0.002s 21 0 2 0 39 0.001s 0.002s 22 0 1 0 36 0.001s 0.002s 23 0 0 0 39 0.002s 0.002s Day Hour Count Avg time (sec) Mar 24 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Mar 25 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Mar 26 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Mar 27 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Mar 28 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Mar 29 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Mar 30 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Mar 24 00 5,420.00 kB 8,383.50 kB 01 199.00 kB 8,086.50 kB 02 1,430.00 kB 6,712.50 kB 03 216.50 kB 5,573.50 kB 04 409.50 kB 4,591.00 kB 05 4,489.50 kB 6,102.50 kB 06 798.50 kB 7,150.50 kB 07 848.00 kB 5,926.50 kB 08 30,008.00 kB 32,098.00 kB 09 4,038.50 kB 50,919.00 kB 10 126.00 kB 41,562.00 kB 11 360.00 kB 33,734.00 kB 12 373.00 kB 27,375.50 kB 13 113.00 kB 22,217.00 kB 14 126.50 kB 18,017.50 kB 15 220.50 kB 14,628.00 kB 16 1,112.50 kB 12,012.50 kB 17 568.50 kB 9,881.50 kB 18 140.00 kB 8,043.50 kB 19 106.50 kB 6,535.50 kB 20 23,582.50 kB 26,324.50 kB 21 8,755.00 kB 41,869.00 kB 22 356.00 kB 34,003.50 kB 23 110,478.50 kB 124,872.00 kB Mar 25 00 106,637.50 kB 208,891.00 kB 01 27.00 kB 169,290.50 kB 02 367,304.50 kB 414,033.00 kB 03 358.00 kB 579,799.50 kB 04 18,255.50 kB 471,482.50 kB 05 564,331.50 kB 1,071,834.50 kB 06 1,785.00 kB 868,425.50 kB 07 1,219.50 kB 703,727.00 kB 08 1,921.00 kB 570,264.50 kB 09 472,212.50 kB 896,534.00 kB 10 561,892.00 kB 943,884.50 kB 11 306,181.00 kB 992,946.50 kB 12 23,447.00 kB 834,340.00 kB 13 1,329.00 kB 676,032.00 kB 14 395.00 kB 547,716.00 kB 15 24,871.00 kB 448,332.00 kB 16 950.00 kB 363,355.50 kB 17 368.50 kB 294,406.00 kB 18 132.00 kB 238,492.50 kB 19 133.00 kB 193,204.50 kB 20 5,438.00 kB 157,529.00 kB 21 4,080.00 kB 128,352.00 kB 22 6,437.50 kB 104,642.50 kB 23 81,003.00 kB 99,539.50 kB Mar 26 00 12,027.00 kB 90,575.00 kB 01 236.50 kB 73,502.00 kB 02 7,275.00 kB 60,348.00 kB 03 9,251.50 kB 51,154.50 kB 04 463.00 kB 41,578.50 kB 05 215,455.00 kB 344,103.00 kB 06 613.50 kB 282,095.00 kB 07 2,081.50 kB 228,893.00 kB 08 27,099.50 kB 188,145.00 kB 09 5,251.00 kB 155,743.00 kB 10 19,930.00 kB 128,253.00 kB 11 1,156.50 kB 105,825.50 kB 12 7,685.50 kB 86,546.00 kB 13 22,741.00 kB 75,068.50 kB 14 6,580.00 kB 62,043.50 kB 15 776.50 kB 50,376.50 kB 16 412.50 kB 40,933.50 kB 17 212.50 kB 33,191.50 kB 18 198.00 kB 26,926.50 kB 19 148.00 kB 21,841.50 kB 20 419.00 kB 17,749.00 kB 21 18,790.00 kB 26,314.50 kB 22 7,617.50 kB 32,792.50 kB 23 3,079.50 kB 27,552.50 kB Mar 27 00 532,363.00 kB 532,363.00 kB 01 10,296.50 kB 457,113.00 kB 02 31,452.50 kB 373,423.00 kB 03 4,739.50 kB 306,198.50 kB 04 225.50 kB 248,062.50 kB 05 2,017.00 kB 201,315.00 kB 06 664.50 kB 163,170.00 kB 07 3,209.00 kB 132,796.00 kB 08 56,647.50 kB 118,311.50 kB 09 274,989.00 kB 501,448.00 kB 10 40,840.00 kB 414,018.50 kB 11 24,126.00 kB 338,777.00 kB 12 897.00 kB 276,685.50 kB 13 151,279.50 kB 287,306.50 kB 14 165.00 kB 232,749.00 kB 15 4,901,756.00 kB 4,951,704.00 kB 16 8,822,779.50 kB 8,824,633.00 kB 17 8,811,755.25 kB 8,821,134.50 kB 18 5,095,665.50 kB 8,447,332.50 kB 19 8,925.00 kB 6,567,723.00 kB 20 7,375,778.67 kB 8,340,815.17 kB 21 3,751,575.50 kB 8,373,522.00 kB 22 7,712,527.50 kB 8,737,994.75 kB 23 8,810,804.75 kB 8,901,602.25 kB Mar 28 00 3,332,225.33 kB 8,097,368.00 kB 01 495.00 kB 6,569,945.00 kB 02 8,189,433.88 kB 8,498,536.81 kB 03 8,898,325.86 kB 9,027,738.29 kB 04 3,350,554.00 kB 8,286,152.00 kB 05 4,521,868.50 kB 7,979,842.00 kB 06 1,830,794.33 kB 7,665,515.33 kB 07 1,239.00 kB 5,877,106.00 kB 08 9,068.00 kB 4,762,095.00 kB 09 349.50 kB 3,857,474.00 kB 10 73,376.50 kB 3,138,490.00 kB 11 735.50 kB 2,542,301.00 kB 12 79,490.50 kB 2,074,377.50 kB 13 793.50 kB 1,680,406.50 kB 14 537.50 kB 1,361,234.00 kB 15 6,688.00 kB 1,103,842.50 kB 16 1,209.00 kB 894,335.00 kB 17 658.50 kB 724,586.50 kB 18 161.50 kB 586,946.00 kB 19 1,566.00 kB 475,597.00 kB 20 169.00 kB 385,392.00 kB 21 7,132.00 kB 312,901.00 kB 22 8,446.50 kB 255,487.00 kB 23 6,201.50 kB 207,939.50 kB Mar 29 00 2,653.50 kB 169,173.50 kB 01 634.00 kB 137,265.50 kB 02 285,198.50 kB 540,190.50 kB 03 1,486.50 kB 437,876.00 kB 04 1,027.00 kB 354,866.00 kB 05 1,461.50 kB 287,692.00 kB 06 1,247.50 kB 233,302.00 kB 07 276,446.50 kB 523,827.50 kB 08 1,403.00 kB 424,588.50 kB 09 1,784.00 kB 344,243.50 kB 10 932.00 kB 279,046.50 kB 11 1,427.50 kB 226,236.50 kB 12 1,347.00 kB 183,503.00 kB 13 707.50 kB 148,828.00 kB 14 990.50 kB 120,724.00 kB 15 1,705.00 kB 98,062.50 kB 16 682.50 kB 79,631.00 kB 17 890.50 kB 64,679.00 kB 18 883.50 kB 52,529.50 kB 19 676.00 kB 42,695.50 kB 20 679.50 kB 34,720.50 kB 21 7,960.00 kB 29,017.00 kB 22 6,399.50 kB 25,127.50 kB 23 770.50 kB 20,703.00 kB Mar 30 00 18,624.00 kB 33,665.00 kB 01 904.00 kB 27,500.50 kB 02 672.50 kB 22,397.00 kB 03 517.00 kB 18,258.00 kB 04 1,824.00 kB 14,996.50 kB 05 917.00 kB 12,430.50 kB 06 27,647.50 kB 52,313.50 kB 07 707.00 kB 42,489.00 kB 08 613.00 kB 34,546.50 kB 09 645.50 kB 28,101.00 kB 10 633.00 kB 22,883.50 kB 11 31,992.50 kB 58,216.50 kB 12 22,080.00 kB 51,398.50 kB 13 720.50 kB 41,825.50 kB 14 9,645.00 kB 34,917.50 kB 15 1,049.00 kB 29,253.50 kB 16 527.50 kB 23,819.00 kB 17 27,861.00 kB 37,796.00 kB 18 1,502.00 kB 47,393.50 kB 19 6,016.50 kB 39,358.00 kB 20 2,470.50 kB 32,482.50 kB 21 16,741.50 kB 28,571.00 kB 22 10,445.00 kB 25,752.00 kB 23 1,903.00 kB 21,602.00 kB -
Temporary Files
Size of temporary files
Key values
- 15.00 GiB Temp Files size Peak
- 2024-03-27 20:14:20 Date
Number of temporary files
Key values
- 21 per second Temp Files Peak
- 2024-03-28 02:28:29 Date
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Mar 24 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Mar 25 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Mar 26 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Mar 27 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 806 23.09 GiB 29.33 MiB 16 317 21.17 GiB 68.40 MiB 17 0 0 0 18 24 23.44 GiB 1000.12 MiB 19 44 43.78 GiB 1018.77 MiB 20 324 164.81 GiB 520.87 MiB 21 0 0 0 22 250 42.95 GiB 175.93 MiB 23 91 2.88 GiB 32.46 MiB Mar 28 00 0 0 0 01 0 0 0 02 786 116.93 GiB 152.34 MiB 03 193 30.95 GiB 164.21 MiB 04 0 0 0 05 8 7.73 GiB 989.28 MiB 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 40 39.38 GiB 1008.05 MiB 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Mar 29 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 42 40.05 GiB 976.39 MiB 13 6 5.72 GiB 976.39 MiB 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Mar 30 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Queries generating the most temporary files (N)
Rank Count Total size Min size Max size Avg size Query 1 1,193 62.90 GiB 8.00 KiB 1.00 GiB 53.99 MiB select * from pgbulkload.pg_bulkload (?);-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-03-27 20:24:57 Duration: 6m24s Database: ctdprd51 User: load Application: pg_bulkload
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-03-27 20:52:22 Duration: 5m21s
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-03-27 15:49:25 Duration: 3m24s
2 897 145.30 GiB 136.00 KiB 1.00 GiB 165.87 MiB vacuum full analyze;-
VACUUM FULL ANALYZE;
Date: 2024-03-28 03:10:40 Duration: 45m57s
-
VACUUM FULL ANALYZE;
Date: 2024-03-28 02:24:43 Duration: 0ms
3 62 1.96 GiB 7.04 MiB 1.00 GiB 32.31 MiB cluster pub1.term;-
CLUSTER pub1.TERM;
Date: 2024-03-28 02:24:10 Duration: 59s137ms
-
CLUSTER pub1.TERM;
Date: 2024-03-28 02:23:20 Duration: 0ms
4 59 58.29 GiB 300.40 MiB 1.00 GiB 1011.74 MiB select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.gene_go_annot gga, pub1.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in;-
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in;
Date: 2024-03-27 20:14:17 Duration: 0ms
5 48 45.77 GiB 738.37 MiB 1.00 GiB 976.39 MiB select distinct ;-
select distinct ;
Date: 2024-03-29 12:34:26 Duration: 0ms
6 44 43.78 GiB 793.99 MiB 1.00 GiB 1018.77 MiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.object_type where cd = ?), ptr.term_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.phenotype_term_reference ptr, pub1.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;-
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;
Date: 2024-03-27 19:38:29 Duration: 0ms
7 35 1.08 GiB 22.69 MiB 46.35 MiB 31.59 MiB vacuum full analyze ixn_actor;-
vacuum FULL analyze ixn_actor;
Date: 2024-03-27 16:45:27 Duration: 22s433ms
-
vacuum FULL analyze ixn_actor;
Date: 2024-03-27 16:45:11 Duration: 0ms
8 35 3.21 GiB 54.26 MiB 132.35 MiB 93.82 MiB vacuum full analyze db_link;-
vacuum FULL analyze db_link;
Date: 2024-03-27 16:47:17 Duration: 1m25s
-
vacuum FULL analyze db_link;
Date: 2024-03-27 16:46:07 Duration: 0ms
9 25 354.96 MiB 10.95 MiB 21.20 MiB 14.20 MiB vacuum full analyze ixn;-
vacuum FULL analyze ixn;
Date: 2024-03-27 16:45:39 Duration: 7s304ms
-
vacuum FULL analyze ixn;
Date: 2024-03-27 16:45:34 Duration: 0ms
10 25 15.34 GiB 8.00 KiB 1.00 GiB 628.40 MiB alter table pub1.term_enrichment_agent add constraint term_enrichment_agent_pk primary key (term_id, enriched_term_id, agent_term_id);-
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-03-27 22:53:11 Duration: 2m52s
-
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-03-27 22:53:10 Duration: 0ms
11 20 213.10 MiB 6.35 MiB 17.02 MiB 10.66 MiB vacuum full analyze term;-
vacuum FULL analyze TERM;
Date: 2024-03-27 16:45:01 Duration: 9s772ms
-
vacuum FULL analyze TERM;
Date: 2024-03-27 16:44:53 Duration: 0ms
12 20 646.23 MiB 18.58 MiB 50.76 MiB 32.31 MiB cluster pub1.term_label;-
CLUSTER pub1.TERM_LABEL;
Date: 2024-03-28 02:24:41 Duration: 31s92ms
-
CLUSTER pub1.TERM_LABEL;
Date: 2024-03-28 02:24:15 Duration: 0ms
13 20 12.10 GiB 8.00 KiB 1.00 GiB 619.47 MiB create unique index gene_disease_reference_ak1 on pub1.gene_disease_reference using btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-03-27 20:30:14 Duration: 2m59s
-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-03-27 20:30:13 Duration: 0ms
14 15 6.72 GiB 8.00 KiB 1.00 GiB 458.87 MiB alter table pub1.gene_disease_reference add constraint gene_disease_reference_pk primary key (id);-
ALTER TABLE pub1.gene_disease_reference ADD CONSTRAINT gene_disease_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:27:15 Duration: 1m8s
-
ALTER TABLE pub1.gene_disease_reference ADD CONSTRAINT gene_disease_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:27:14 Duration: 0ms Database: ctdprd51 User: pub1
15 15 10.96 GiB 56.59 MiB 1.00 GiB 748.08 MiB create index ix_term_enrich_agent_enr_term on pub1.term_enrichment_agent using btree (enriched_term_id);-
CREATE INDEX ix_term_enrich_agent_enr_term ON pub1.term_enrichment_agent USING btree (enriched_term_id);
Date: 2024-03-27 22:54:54 Duration: 1m42s
-
CREATE INDEX ix_term_enrich_agent_enr_term ON pub1.term_enrichment_agent USING btree (enriched_term_id);
Date: 2024-03-27 22:54:53 Duration: 0ms
16 10 6.72 GiB 155.39 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_ref_source_cd on pub1.gene_disease_reference using btree (source_cd);-
CREATE INDEX ix_gene_disease_ref_source_cd ON pub1.gene_disease_reference USING btree (source_cd);
Date: 2024-03-27 20:31:56 Duration: 55s955ms
-
CREATE INDEX ix_gene_disease_ref_source_cd ON pub1.gene_disease_reference USING btree (source_cd);
Date: 2024-03-27 20:31:56 Duration: 0ms
17 10 153.55 MiB 8.00 KiB 31.14 MiB 15.36 MiB alter table pub1.term_enrichment add constraint term_enrichment_pk primary key (term_id, enriched_term_id);-
ALTER TABLE pub1.term_enrichment ADD CONSTRAINT term_enrichment_pk PRIMARY KEY (term_id, enriched_term_id);
Date: 2024-03-27 22:37:56 Duration: 2s89ms
-
ALTER TABLE pub1.term_enrichment ADD CONSTRAINT term_enrichment_pk PRIMARY KEY (term_id, enriched_term_id);
Date: 2024-03-27 22:37:56 Duration: 0ms Database: ctdprd51 User: pub1
18 10 622.84 MiB 8.00 KiB 126.03 MiB 62.28 MiB alter table pub1.gene_disease add constraint gene_disease_pk primary key (gene_id, disease_id);-
ALTER TABLE pub1.gene_disease ADD CONSTRAINT gene_disease_pk PRIMARY KEY (gene_id, disease_id);
Date: 2024-03-27 23:08:55 Duration: 7s298ms
-
ALTER TABLE pub1.gene_disease ADD CONSTRAINT gene_disease_pk PRIMARY KEY (gene_id, disease_id);
Date: 2024-03-27 23:08:54 Duration: 0ms Database: ctdprd51 User: pub1
19 10 6.72 GiB 325.92 MiB 1.00 GiB 688.29 MiB create index ix_gene_disease_ref_mod_tm on pub1.gene_disease_reference using btree (mod_tm);-
CREATE INDEX ix_gene_disease_ref_mod_tm ON pub1.gene_disease_reference USING btree (mod_tm);
Date: 2024-03-27 20:40:42 Duration: 1m22s
-
CREATE INDEX ix_gene_disease_ref_mod_tm ON pub1.gene_disease_reference USING btree (mod_tm);
Date: 2024-03-27 20:40:42 Duration: 0ms
20 10 6.72 GiB 304.05 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_ref_disease on pub1.gene_disease_reference using btree (disease_id);-
CREATE INDEX ix_gene_disease_ref_disease ON pub1.gene_disease_reference USING btree (disease_id);
Date: 2024-03-27 20:34:46 Duration: 1m22s
-
CREATE INDEX ix_gene_disease_ref_disease ON pub1.gene_disease_reference USING btree (disease_id);
Date: 2024-03-27 20:34:46 Duration: 0ms
21 10 61.91 MiB 8.00 KiB 14.10 MiB 6.19 MiB alter table pub1.phenotype_term add constraint phenotype_term_pk primary key (phenotype_id, term_id);-
ALTER TABLE pub1.phenotype_term ADD CONSTRAINT phenotype_term_pk PRIMARY KEY (phenotype_id, term_id);
Date: 2024-03-27 23:09:24 Duration: 0ms
22 10 6.72 GiB 324.93 MiB 1.00 GiB 688.29 MiB create index ix_gene_disease_ref_reference on pub1.gene_disease_reference using btree (reference_id);-
CREATE INDEX ix_gene_disease_ref_reference ON pub1.gene_disease_reference USING btree (reference_id);
Date: 2024-03-27 20:36:08 Duration: 1m21s
-
CREATE INDEX ix_gene_disease_ref_reference ON pub1.gene_disease_reference USING btree (reference_id);
Date: 2024-03-27 20:36:07 Duration: 0ms
23 10 6.72 GiB 324.91 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_ref_net_sc on pub1.gene_disease_reference using btree (network_score);-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub1.gene_disease_reference USING btree (network_score);
Date: 2024-03-27 20:43:03 Duration: 2m20s
-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub1.gene_disease_reference USING btree (network_score);
Date: 2024-03-27 20:43:02 Duration: 0ms
24 10 6.72 GiB 304.45 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_ref_src_db on pub1.gene_disease_reference using btree (source_acc_db_id);-
CREATE INDEX ix_gene_disease_ref_src_db ON pub1.gene_disease_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:31:01 Duration: 46s674ms
-
CREATE INDEX ix_gene_disease_ref_src_db ON pub1.gene_disease_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:31:00 Duration: 0ms
25 10 981.18 MiB 8.00 KiB 200.07 MiB 98.12 MiB alter table pub1.phenotype_term_reference add constraint phenotype_term_reference_pk primary key (id);-
ALTER TABLE pub1.phenotype_term_reference ADD CONSTRAINT phenotype_term_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:43:14 Duration: 11s408ms
-
ALTER TABLE pub1.phenotype_term_reference ADD CONSTRAINT phenotype_term_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:43:13 Duration: 0ms
26 10 6.72 GiB 293.18 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_ref_dis_gene on pub1.gene_disease_reference using btree (disease_id, gene_id);-
CREATE INDEX ix_gene_disease_ref_dis_gene ON pub1.gene_disease_reference USING btree (disease_id, gene_id);
Date: 2024-03-27 20:37:57 Duration: 1m49s
-
CREATE INDEX ix_gene_disease_ref_dis_gene ON pub1.gene_disease_reference USING btree (disease_id, gene_id);
Date: 2024-03-27 20:37:57 Duration: 0ms
27 10 237.23 MiB 8.00 KiB 48.97 MiB 23.72 MiB alter table pub1.chem_disease_reference add constraint chem_disease_reference_pk primary key (id);-
ALTER TABLE pub1.chem_disease_reference ADD CONSTRAINT chem_disease_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:45:29 Duration: 2s154ms
-
ALTER TABLE pub1.chem_disease_reference ADD CONSTRAINT chem_disease_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:45:29 Duration: 0ms
28 10 6.72 GiB 315.96 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_reference_ixn on pub1.gene_disease_reference using btree (ixn_id);-
CREATE INDEX ix_gene_disease_reference_ixn ON pub1.gene_disease_reference USING btree (ixn_id);
Date: 2024-03-27 20:39:19 Duration: 1m21s
-
CREATE INDEX ix_gene_disease_reference_ixn ON pub1.gene_disease_reference USING btree (ixn_id);
Date: 2024-03-27 20:39:19 Duration: 0ms
29 10 6.72 GiB 300.27 MiB 1.00 GiB 688.29 MiB create index ix_gene_disease_ref_chem on pub1.gene_disease_reference using btree (via_chem_id);-
CREATE INDEX ix_gene_disease_ref_chem ON pub1.gene_disease_reference USING btree (via_chem_id);
Date: 2024-03-27 20:33:24 Duration: 1m27s
-
CREATE INDEX ix_gene_disease_ref_chem ON pub1.gene_disease_reference USING btree (via_chem_id);
Date: 2024-03-27 20:33:24 Duration: 0ms
30 10 432.22 MiB 8.00 KiB 87.37 MiB 43.22 MiB create unique index chem_disease_reference_ak1 on pub1.chem_disease_reference using btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);-
CREATE UNIQUE INDEX chem_disease_reference_ak1 ON pub1.chem_disease_reference USING btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);
Date: 2024-03-27 20:45:04 Duration: 6s73ms
-
CREATE UNIQUE INDEX chem_disease_reference_ak1 ON pub1.chem_disease_reference USING btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);
Date: 2024-03-27 20:45:04 Duration: 0ms
31 8 62.66 MiB 8.00 KiB 17.11 MiB 7.83 MiB alter table pub1.chem_disease add constraint chem_disease_pk primary key (chem_id, disease_id);-
ALTER TABLE pub1.chem_disease ADD CONSTRAINT chem_disease_pk PRIMARY KEY (chem_id, disease_id);
Date: 2024-03-27 23:09:29 Duration: 0ms
32 8 7.73 GiB 746.23 MiB 1.00 GiB 989.28 MiB select pub1.maint_cached_value_refresh_data_metrics ();-
select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-03-28 05:52:06 Duration: 35m34s
-
select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-03-28 05:47:48 Duration: 0ms
33 5 981.13 MiB 156.67 MiB 212.09 MiB 196.23 MiB create index ix_phenotype_term_ref_object_type_id on pub1.phenotype_term_reference using btree (term_object_type_id);-
CREATE INDEX ix_phenotype_term_ref_object_type_id ON pub1.phenotype_term_reference USING btree (term_object_type_id);
Date: 2024-03-27 20:43:42 Duration: 8s434ms
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CREATE INDEX ix_phenotype_term_ref_object_type_id ON pub1.phenotype_term_reference USING btree (term_object_type_id);
Date: 2024-03-27 20:43:42 Duration: 0ms
34 5 153.52 MiB 29.37 MiB 32.17 MiB 30.70 MiB create index ix_term_enrich_obj_type on pub1.term_enrichment using btree (object_type_id);-
CREATE INDEX ix_term_enrich_obj_type ON pub1.term_enrichment USING btree (object_type_id);
Date: 2024-03-27 22:37:58 Duration: 1s928ms
-
CREATE INDEX ix_term_enrich_obj_type ON pub1.term_enrichment USING btree (object_type_id);
Date: 2024-03-27 22:37:58 Duration: 0ms
35 5 214.34 MiB 42.40 MiB 43.22 MiB 42.87 MiB create index ix_term_enrich_raw_p_val on pub1.term_enrichment using btree (raw_p_val);-
CREATE INDEX ix_term_enrich_raw_p_val ON pub1.term_enrichment USING btree (raw_p_val);
Date: 2024-03-27 22:38:11 Duration: 4s767ms
-
CREATE INDEX ix_term_enrich_raw_p_val ON pub1.term_enrichment USING btree (raw_p_val);
Date: 2024-03-27 22:38:11 Duration: 0ms
36 5 237.19 MiB 43.66 MiB 49.68 MiB 47.44 MiB create index ix_chem_disease_reference_dis on pub1.chem_disease_reference using btree (disease_id);-
CREATE INDEX ix_chem_disease_reference_dis ON pub1.chem_disease_reference USING btree (disease_id);
Date: 2024-03-27 20:45:07 Duration: 2s738ms
-
CREATE INDEX ix_chem_disease_reference_dis ON pub1.chem_disease_reference USING btree (disease_id);
Date: 2024-03-27 20:45:07 Duration: 0ms
37 5 237.19 MiB 45.55 MiB 49.95 MiB 47.44 MiB create index ix_chem_disease_reference_ref on pub1.chem_disease_reference using btree (reference_id);-
CREATE INDEX ix_chem_disease_reference_ref ON pub1.chem_disease_reference USING btree (reference_id);
Date: 2024-03-27 20:45:10 Duration: 2s784ms
-
CREATE INDEX ix_chem_disease_reference_ref ON pub1.chem_disease_reference USING btree (reference_id);
Date: 2024-03-27 20:45:10 Duration: 0ms
38 5 214.36 MiB 41.44 MiB 44.79 MiB 42.87 MiB create index ix_term_enrich_corr_p_val on pub1.term_enrichment using btree (corrected_p_val);-
CREATE INDEX ix_term_enrich_corr_p_val ON pub1.term_enrichment USING btree (corrected_p_val);
Date: 2024-03-27 22:38:06 Duration: 4s611ms
-
CREATE INDEX ix_term_enrich_corr_p_val ON pub1.term_enrichment USING btree (corrected_p_val);
Date: 2024-03-27 22:38:06 Duration: 0ms
39 5 622.66 MiB 123.64 MiB 125.22 MiB 124.53 MiB create index ix_gene_disease_ind_chem_qty on pub1.gene_disease using btree (indirect_chem_qty) where (indirect_chem_qty > ?);-
CREATE INDEX ix_gene_disease_ind_chem_qty ON pub1.gene_disease USING btree (indirect_chem_qty) WHERE (indirect_chem_qty > 0);
Date: 2024-03-27 23:09:23 Duration: 6s937ms
-
CREATE INDEX ix_gene_disease_ind_chem_qty ON pub1.gene_disease USING btree (indirect_chem_qty) WHERE (indirect_chem_qty > 0);
Date: 2024-03-27 23:09:23 Duration: 0ms
40 5 688.00 KiB 136.00 KiB 144.00 KiB 137.60 KiB create index ix_gene_disease_cur_ref_qty on pub1.gene_disease using btree (curated_reference_qty) where (curated_reference_qty > ?);-
CREATE INDEX ix_gene_disease_cur_ref_qty ON pub1.gene_disease USING btree (curated_reference_qty) WHERE (curated_reference_qty > 0);
Date: 2024-03-27 23:09:16 Duration: 0ms
41 5 981.14 MiB 194.33 MiB 198.30 MiB 196.23 MiB create index ix_phenotype_term_ref_taxon_id on pub1.phenotype_term_reference using btree (taxon_id);-
CREATE INDEX ix_phenotype_term_ref_taxon_id ON pub1.phenotype_term_reference USING btree (taxon_id);
Date: 2024-03-27 20:43:59 Duration: 7s116ms
-
CREATE INDEX ix_phenotype_term_ref_taxon_id ON pub1.phenotype_term_reference USING btree (taxon_id);
Date: 2024-03-27 20:43:59 Duration: 0ms
42 5 1.34 GiB 272.88 MiB 277.93 MiB 275.38 MiB create index ix_phenotype_term_ref_ids on pub1.phenotype_term_reference using btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);-
CREATE INDEX ix_phenotype_term_ref_ids ON pub1.phenotype_term_reference USING btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);
Date: 2024-03-27 20:44:58 Duration: 13s759ms
-
CREATE INDEX ix_phenotype_term_ref_ids ON pub1.phenotype_term_reference USING btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);
Date: 2024-03-27 20:44:58 Duration: 0ms
43 5 981.13 MiB 190.95 MiB 202.10 MiB 196.23 MiB create index ix_phenotype_term_ref_via_term_id on pub1.phenotype_term_reference using btree (via_term_id);-
CREATE INDEX ix_phenotype_term_ref_via_term_id ON pub1.phenotype_term_reference USING btree (via_term_id);
Date: 2024-03-27 20:44:44 Duration: 10s430ms
-
CREATE INDEX ix_phenotype_term_ref_via_term_id ON pub1.phenotype_term_reference USING btree (via_term_id);
Date: 2024-03-27 20:44:44 Duration: 0ms
44 5 153.52 MiB 29.48 MiB 31.73 MiB 30.70 MiB create index ix_term_enrich_tgt_match on pub1.term_enrichment using btree (target_match_qty);-
CREATE INDEX ix_term_enrich_tgt_match ON pub1.term_enrichment USING btree (target_match_qty);
Date: 2024-03-27 22:38:00 Duration: 1s804ms
-
CREATE INDEX ix_term_enrich_tgt_match ON pub1.term_enrichment USING btree (target_match_qty);
Date: 2024-03-27 22:38:00 Duration: 0ms
45 5 981.13 MiB 184.33 MiB 203.62 MiB 196.23 MiB create index ixn_phenotype_term_ref_phenotype_id on pub1.phenotype_term_reference using btree (phenotype_id);-
CREATE INDEX ixn_phenotype_term_ref_phenotype_id ON pub1.phenotype_term_reference USING btree (phenotype_id);
Date: 2024-03-27 20:43:23 Duration: 9s78ms
-
CREATE INDEX ixn_phenotype_term_ref_phenotype_id ON pub1.phenotype_term_reference USING btree (phenotype_id);
Date: 2024-03-27 20:43:23 Duration: 0ms
46 5 4.96 GiB 981.72 MiB 1.00 GiB 1015.54 MiB select distinct ptr.phenotype_id, cdr.disease_id, ( select id from pub1.object_type where cd = ?), cdr.reference_id, ptr.reference_id, cdr.ixn_id, cdr.chem_id, ( select id from pub1.object_type where cd = ?), cdr.mod_tm from pub1.chem_disease_reference cdr, pub1.phenotype_term_reference ptr where cdr.chem_id = ptr.term_id;-
SELECT DISTINCT ptr.phenotype_id, cdr.disease_id, ( select id from pub1.OBJECT_TYPE where cd = 'disease'), cdr.reference_id, ptr.reference_id, cdr.ixn_id, cdr.chem_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), cdr.mod_tm FROM pub1.CHEM_DISEASE_REFERENCE cdr, pub1.PHENOTYPE_TERM_REFERENCE ptr WHERE cdr.chem_id = ptr.term_id;
Date: 2024-03-27 20:17:40 Duration: 0ms
47 5 981.13 MiB 191.53 MiB 201.12 MiB 196.23 MiB create index ix_phenotype_term_reference_source_acc_db_id on pub1.phenotype_term_reference using btree (source_acc_db_id);-
CREATE INDEX ix_phenotype_term_reference_source_acc_db_id ON pub1.phenotype_term_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:44:13 Duration: 7s355ms
-
CREATE INDEX ix_phenotype_term_reference_source_acc_db_id ON pub1.phenotype_term_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:44:13 Duration: 0ms
48 5 622.80 MiB 122.89 MiB 126.38 MiB 124.56 MiB create index ix_gene_disease_network_score on pub1.gene_disease using btree (network_score);-
CREATE INDEX ix_gene_disease_network_score ON pub1.gene_disease USING btree (network_score);
Date: 2024-03-27 23:09:09 Duration: 14s165ms
-
CREATE INDEX ix_gene_disease_network_score ON pub1.gene_disease USING btree (network_score);
Date: 2024-03-27 23:09:09 Duration: 0ms
49 5 237.18 MiB 46.57 MiB 48.29 MiB 47.44 MiB create index ix_chem_disease_ref_net_sc on pub1.chem_disease_reference using btree (network_score);-
CREATE INDEX ix_chem_disease_ref_net_sc ON pub1.chem_disease_reference USING btree (network_score);
Date: 2024-03-27 20:45:27 Duration: 4s891ms
-
CREATE INDEX ix_chem_disease_ref_net_sc ON pub1.chem_disease_reference USING btree (network_score);
Date: 2024-03-27 20:45:27 Duration: 0ms
50 5 981.13 MiB 191.61 MiB 201.34 MiB 196.23 MiB create index ix_phenotype_term_ref_evidence_cd on pub1.phenotype_term_reference using btree (evidence_cd);-
CREATE INDEX ix_phenotype_term_ref_evidence_cd ON pub1.phenotype_term_reference USING btree (evidence_cd);
Date: 2024-03-27 20:44:06 Duration: 7s103ms
-
CREATE INDEX ix_phenotype_term_ref_evidence_cd ON pub1.phenotype_term_reference USING btree (evidence_cd);
Date: 2024-03-27 20:44:06 Duration: 0ms
51 5 237.19 MiB 40.96 MiB 54.16 MiB 47.44 MiB create index ix_chem_disease_ref_src_db on pub1.chem_disease_reference using btree (source_acc_db_id);-
CREATE INDEX ix_chem_disease_ref_src_db ON pub1.chem_disease_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:45:14 Duration: 1s926ms
-
CREATE INDEX ix_chem_disease_ref_src_db ON pub1.chem_disease_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:45:14 Duration: 0ms
52 5 61.88 MiB 12.02 MiB 12.55 MiB 12.38 MiB create index ix_phenotype_term_term_id on pub1.phenotype_term using btree (term_id);-
CREATE INDEX ix_phenotype_term_term_id ON pub1.phenotype_term USING btree (term_id);
Date: 2024-03-27 23:09:25 Duration: 0ms
53 5 237.18 MiB 44.80 MiB 49.62 MiB 47.44 MiB create index ix_chem_disease_ref_mod_tm on pub1.chem_disease_reference using btree (mod_tm);-
CREATE INDEX ix_chem_disease_ref_mod_tm ON pub1.chem_disease_reference USING btree (mod_tm);
Date: 2024-03-27 20:45:22 Duration: 2s735ms
-
CREATE INDEX ix_chem_disease_ref_mod_tm ON pub1.chem_disease_reference USING btree (mod_tm);
Date: 2024-03-27 20:45:22 Duration: 0ms
54 5 153.52 MiB 27.94 MiB 31.79 MiB 30.70 MiB create index ix_term_enrich_enr_obj_type on pub1.term_enrichment using btree (enriched_object_type_id);-
CREATE INDEX ix_term_enrich_enr_obj_type ON pub1.term_enrichment USING btree (enriched_object_type_id);
Date: 2024-03-27 22:38:01 Duration: 1s150ms
-
CREATE INDEX ix_term_enrich_enr_obj_type ON pub1.term_enrichment USING btree (enriched_object_type_id);
Date: 2024-03-27 22:38:01 Duration: 0ms
55 5 237.18 MiB 45.34 MiB 49.59 MiB 47.44 MiB create index ix_chem_disease_reference_ixn on pub1.chem_disease_reference using btree (ixn_id);-
CREATE INDEX ix_chem_disease_reference_ixn ON pub1.chem_disease_reference USING btree (ixn_id);
Date: 2024-03-27 20:45:19 Duration: 2s773ms
-
CREATE INDEX ix_chem_disease_reference_ixn ON pub1.chem_disease_reference USING btree (ixn_id);
Date: 2024-03-27 20:45:19 Duration: 0ms
56 5 981.13 MiB 191.77 MiB 200.38 MiB 196.23 MiB create index ix_phenotype_term_reference_ixn_id on pub1.phenotype_term_reference using btree (ixn_id);-
CREATE INDEX ix_phenotype_term_reference_ixn_id ON pub1.phenotype_term_reference USING btree (ixn_id);
Date: 2024-03-27 20:44:34 Duration: 10s271ms
-
CREATE INDEX ix_phenotype_term_reference_ixn_id ON pub1.phenotype_term_reference USING btree (ixn_id);
Date: 2024-03-27 20:44:34 Duration: 0ms
57 5 237.19 MiB 45.73 MiB 48.79 MiB 47.44 MiB create index ix_chem_disease_ref_source_cd on pub1.chem_disease_reference using btree (source_cd);-
CREATE INDEX ix_chem_disease_ref_source_cd ON pub1.chem_disease_reference USING btree (source_cd);
Date: 2024-03-27 20:45:12 Duration: 1s911ms
-
CREATE INDEX ix_chem_disease_ref_source_cd ON pub1.chem_disease_reference USING btree (source_cd);
Date: 2024-03-27 20:45:12 Duration: 0ms
58 5 61.88 MiB 10.88 MiB 13.03 MiB 12.38 MiB create index ix_phenotype_term_phenotype_id on pub1.phenotype_term using btree (phenotype_id);-
CREATE INDEX ix_phenotype_term_phenotype_id ON pub1.phenotype_term USING btree (phenotype_id);
Date: 2024-03-27 23:09:25 Duration: 0ms
59 5 981.13 MiB 188.45 MiB 202.71 MiB 196.23 MiB create index ix_phenotype_term_ref_reference_id on pub1.phenotype_term_reference using btree (reference_id);-
CREATE INDEX ix_phenotype_term_ref_reference_id ON pub1.phenotype_term_reference USING btree (reference_id);
Date: 2024-03-27 20:43:52 Duration: 10s127ms
-
CREATE INDEX ix_phenotype_term_ref_reference_id ON pub1.phenotype_term_reference USING btree (reference_id);
Date: 2024-03-27 20:43:52 Duration: 0ms
60 5 237.19 MiB 45.01 MiB 48.27 MiB 47.44 MiB create index ix_chem_disease_reference_gene on pub1.chem_disease_reference using btree (via_gene_id);-
CREATE INDEX ix_chem_disease_reference_gene ON pub1.chem_disease_reference USING btree (via_gene_id);
Date: 2024-03-27 20:45:16 Duration: 2s690ms
-
CREATE INDEX ix_chem_disease_reference_gene ON pub1.chem_disease_reference USING btree (via_gene_id);
Date: 2024-03-27 20:45:16 Duration: 0ms
61 5 981.14 MiB 181.69 MiB 206.06 MiB 196.23 MiB create index ix_phenotype_term_ref_term_id on pub1.phenotype_term_reference using btree (term_id);-
CREATE INDEX ix_phenotype_term_ref_term_id ON pub1.phenotype_term_reference USING btree (term_id);
Date: 2024-03-27 20:43:33 Duration: 9s783ms
-
CREATE INDEX ix_phenotype_term_ref_term_id ON pub1.phenotype_term_reference USING btree (term_id);
Date: 2024-03-27 20:43:33 Duration: 0ms
62 5 622.80 MiB 122.94 MiB 125.70 MiB 124.56 MiB create index ix_gene_disease_disease on pub1.gene_disease using btree (disease_id);-
CREATE INDEX ix_gene_disease_disease ON pub1.gene_disease USING btree (disease_id);
Date: 2024-03-27 23:09:15 Duration: 6s660ms
-
CREATE INDEX ix_gene_disease_disease ON pub1.gene_disease USING btree (disease_id);
Date: 2024-03-27 23:09:15 Duration: 0ms
63 5 40.00 KiB 8.00 KiB 8.00 KiB 8.00 KiB create index ix_gene_disease_exp_ref_qty on pub1.gene_disease using btree (exposure_reference_qty) where (exposure_reference_qty > ?);-
CREATE INDEX ix_gene_disease_exp_ref_qty ON pub1.gene_disease USING btree (exposure_reference_qty) WHERE (exposure_reference_qty > 0);
Date: 2024-03-27 23:09:23 Duration: 0ms
64 5 981.13 MiB 188.85 MiB 205.75 MiB 196.23 MiB create index ix_phenotype_term_reference_term_reference_id on pub1.phenotype_term_reference using btree (term_reference_id);-
CREATE INDEX ix_phenotype_term_reference_term_reference_id ON pub1.phenotype_term_reference USING btree (term_reference_id);
Date: 2024-03-27 20:44:24 Duration: 10s303ms
-
CREATE INDEX ix_phenotype_term_reference_term_reference_id ON pub1.phenotype_term_reference USING btree (term_reference_id);
Date: 2024-03-27 20:44:24 Duration: 0ms
65 4 12.88 MiB 8.00 KiB 6.48 MiB 3.22 MiB alter table pub1.phenotype_term_axn add constraint phenotype_term_axn_pk primary key (phenotype_id, term_id, action_type_nm, action_degree_type_nm);-
ALTER TABLE pub1.phenotype_term_axn ADD CONSTRAINT phenotype_term_axn_pk PRIMARY KEY (phenotype_id, term_id, action_type_nm, action_degree_type_nm);
Date: 2024-03-27 23:09:26 Duration: 0ms
66 4 62.62 MiB 15.48 MiB 15.80 MiB 15.66 MiB create index ix_chem_disease_disease on pub1.chem_disease using btree (disease_id);-
CREATE INDEX ix_chem_disease_disease ON pub1.chem_disease USING btree (disease_id);
Date: 2024-03-27 23:09:29 Duration: 0ms
67 4 32.00 KiB 8.00 KiB 8.00 KiB 8.00 KiB create index ix_chem_disease_exp_ref_qty on pub1.chem_disease using btree (exposure_reference_qty) where (exposure_reference_qty > ?);-
CREATE INDEX ix_chem_disease_exp_ref_qty ON pub1.chem_disease USING btree (exposure_reference_qty) WHERE (exposure_reference_qty > 0);
Date: 2024-03-27 23:09:30 Duration: 0ms
68 4 61.73 MiB 14.88 MiB 16.04 MiB 15.43 MiB create index ix_chem_disease_ind_gene_qty on pub1.chem_disease using btree (indirect_gene_qty) where (indirect_gene_qty > ?);-
CREATE INDEX ix_chem_disease_ind_gene_qty ON pub1.chem_disease USING btree (indirect_gene_qty) WHERE (indirect_gene_qty > 0);
Date: 2024-03-27 23:09:30 Duration: 0ms
69 4 62.62 MiB 13.52 MiB 16.68 MiB 15.66 MiB create index ix_chem_disease_network_score on pub1.chem_disease using btree (network_score);-
CREATE INDEX ix_chem_disease_network_score ON pub1.chem_disease USING btree (network_score);
Date: 2024-03-27 23:09:28 Duration: 1s434ms
-
CREATE INDEX ix_chem_disease_network_score ON pub1.chem_disease USING btree (network_score);
Date: 2024-03-27 23:09:28 Duration: 0ms
70 4 1.98 MiB 464.00 KiB 552.00 KiB 508.00 KiB create index ix_chem_disease_cur_ref_qty on pub1.chem_disease using btree (curated_reference_qty) where (curated_reference_qty > ?);-
CREATE INDEX ix_chem_disease_cur_ref_qty ON pub1.chem_disease USING btree (curated_reference_qty) WHERE (curated_reference_qty > 0);
Date: 2024-03-27 23:09:30 Duration: 0ms
71 2 5.84 MiB 2.33 MiB 3.51 MiB 2.92 MiB create index ix_phenotype_term_axn_term_id on pub1.phenotype_term_axn using btree (term_id);-
CREATE INDEX ix_phenotype_term_axn_term_id ON pub1.phenotype_term_axn USING btree (term_id);
Date: 2024-03-27 23:09:27 Duration: 0ms
72 2 5.83 MiB 2.38 MiB 3.45 MiB 2.91 MiB create index ix_phenotype_term_axn_phenotype_id on pub1.phenotype_term_axn using btree (phenotype_id);-
CREATE INDEX ix_phenotype_term_axn_phenotype_id ON pub1.phenotype_term_axn USING btree (phenotype_id);
Date: 2024-03-27 23:09:26 Duration: 0ms
73 1 23.44 GiB 23.44 GiB 23.44 GiB 23.44 GiB select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);-
select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:59:18 Duration: 0ms
Queries generating the largest temporary files
Rank Size Query 1 23.44 GiB select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');[ Date: 2024-03-27 18:59:18 ]
2 1.00 GiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2024-03-27 16:08:24 - Database: ctdprd51 - User: load - Application: pg_bulkload ]
3 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:29 ]
4 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:29 ]
5 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:29 ]
6 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:29 ]
7 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:29 ]
8 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
9 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
10 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
11 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
12 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
13 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
14 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
15 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
16 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
17 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
18 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
19 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
20 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
-
Vacuums
Vacuums / Analyzes Distribution
Key values
- 248.98 sec Highest CPU-cost vacuum
Table pub1.gene_disease
Database ctdprd51 - 2024-03-27 23:44:30 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 248.98 sec Highest CPU-cost vacuum
Table pub1.gene_disease
Database ctdprd51 - 2024-03-27 23:44:30 Date
Analyzes per table
Key values
- pubc.log_query (172) Main table analyzed (database ctdprd51)
- 286 analyzes Total
Table Number of analyzes ctdprd51.pubc.log_query 172 ctdprd51.pg_catalog.pg_class 6 ctdprd51.pub1.term_set_enrichment 4 ctdprd51.pub1.term 4 ctdprd51.pub1.term_set_enrichment_agent 4 ctdprd51.pub1.reference 3 ctdprd51.pg_catalog.pg_index 3 ctdprd51.pg_catalog.pg_attribute 3 ctdprd51.pg_catalog.pg_type 3 ctdprd51.pub2.term_set_enrichment_agent 2 ctdprd51.pg_catalog.pg_constraint 2 ctdprd51.pub2.term_set_enrichment 2 ctdprd51.pub1.dag_node 2 ctdprd51.pub1.db 2 ctdprd51.pg_catalog.pg_depend 2 ctdprd51.pub1.phenotype_term 2 ctdprd51.pg_catalog.pg_trigger 2 ctdprd51.pg_catalog.pg_shdepend 2 ctdprd51.pub1.term_comp_agent 2 ctdprd51.pg_catalog.pg_description 1 ctdprd51.pub1.db_report_site 1 ctdprd51.edit.db 1 ctdprd51.pub1.reference_party_role 1 ctdprd51.pub1.gene_disease 1 ctdprd51.pub1.chem_disease 1 postgres.pg_catalog.pg_db_role_setting 1 ctdprd51.pub1.exp_event_project 1 ctdprd51.pub1.term_label 1 ctdprd51.pub1.exposure 1 ctdprd51.pub1.db_link 1 ctdprd51.pub1.reference_party 1 ctdprd51.pub1.country 1 ctdprd51.pub1.exp_event 1 ctdprd51.edit.action_degree 1 ctdprd51.pub1.exp_receptor_race 1 ctdprd51.pub1.slim_term_mapping 1 ctdprd51.pub1.reference_exp 1 ctdprd51.load.country 1 ctdprd51.edit.object_note 1 ctdprd51.edit.slim_term 1 ctdprd51.edit.action_degree_type 1 ctdprd51.pub1.exp_stressor 1 ctdprd51.edit.action_type_path 1 ctdprd51.edit.reference_db_link 1 ctdprd51.pub1.ixn 1 ctdprd51.pub1.medium 1 ctdprd51.edit.evidence 1 ctdprd51.pub1.exp_event_assay_method 1 ctdprd51.pg_catalog.pg_proc 1 ctdprd51.pub1.dag_edge 1 ctdprd51.pub1.geographic_region 1 ctdprd51.pub1.exp_study_factor 1 ctdprd51.pub1.exp_anatomy 1 ctdprd51.edit.action_type 1 ctdprd51.edit.list_db_report 1 ctdprd51.pg_catalog.pg_attrdef 1 ctdprd51.pub1.gene_taxon 1 ctdprd51.edit.db_link 1 ctdprd51.pub1.term_pathway 1 ctdprd51.pub1.exp_receptor 1 ctdprd51.pub1.gene_gene 1 ctdprd51.edit.db_report 1 ctdprd51.edit.actor_form_type 1 ctdprd51.pub1.term_comp 1 ctdprd51.pub1.gene_chem_ref_gene_form 1 ctdprd51.edit.db_report_site 1 ctdprd51.pub1.gene_go_annot 1 ctdprd51.pub1.exp_event_location 1 ctdprd51.pub1.list_db_report 1 ctdprd51.pub1.exp_receptor_gender 1 ctdprd51.load.data_load 1 ctdprd51.pub1.img 1 ctdprd51.pub1.gene_gene_reference 1 ctdprd51.pub1.term_reference 1 ctdprd51.pub1.action_type 1 ctdprd51.edit.term_label_type 1 ctdprd51.pub1.db_report 1 ctdprd51.load.geographic_region 1 ctdprd51.pub1.exp_outcome 1 ctdprd51.pub1.gene_gene_ref_throughput 1 ctdprd51.load.medium 1 ctdprd51.pub1.exp_stressor_stressor_src 1 ctdprd51.pub1.exp_receptor_tobacco_use 1 Total 286 Vacuums per table
Key values
- pubc.log_query (98) Main table vacuumed on database ctdprd51
- 181 vacuums Total
Index Buffer usage Skipped WAL usage Table Vacuums scans hits misses dirtied pins frozen records full page bytes ctdprd51.pubc.log_query 98 20 44,384 0 3,857 0 77 7,782 756 4,878,807 ctdprd51.pg_catalog.pg_class 4 4 1,256 0 223 0 0 645 190 990,339 ctdprd51.pub1.term 4 2 1,470,121 0 215,268 0 140 875,418 317,603 1,461,113,775 ctdprd51.pg_catalog.pg_statistic 4 4 2,557 0 423 0 62 1,606 336 1,414,001 ctdprd51.pub1.reference 3 2 655,839 0 14 1 0 367,853 50,942 225,765,026 ctdprd51.pg_toast.pg_toast_2619 3 3 12,576 0 4,389 0 30,582 10,821 2,377 1,528,996 ctdprd51.pub1.term_set_enrichment_agent 3 0 19,415 0 130 0 0 9,654 3 594,843 ctdprd51.pub1.phenotype_term 2 2 925,375 0 116,382 0 0 743,442 118,912 288,099,730 ctdprd51.pub2.term_set_enrichment_agent 2 0 836,498 0 538,871 0 0 565,536 22 33,542,212 ctdprd51.pg_catalog.pg_type 2 2 249 0 42 0 0 128 35 141,425 ctdprd51.pub1.dag_node 2 1 397,307 0 2,956 2 0 311,141 556 93,552,456 ctdprd51.pg_toast.pg_toast_486223 2 0 66 0 8 0 0 5 2 16,947 ctdprd51.pub2.term_set_enrichment 2 0 17,179 0 10,722 0 0 11,385 5 710,726 ctdprd51.pg_catalog.pg_attribute 2 2 1,387 0 251 0 90 799 180 847,968 ctdprd51.pub1.term_set_enrichment 2 0 804 0 29 0 0 310 3 38,884 ctdprd51.pub1.gene_disease 1 1 2,783,934 0 752,948 0 0 1,575,025 715,395 2,002,748,906 ctdprd51.pub1.chem_disease 1 1 259,044 0 9,440 0 0 158,346 9,429 114,409,755 ctdprd51.pg_toast.pg_toast_4790139 1 0 86,323 0 3 0 0 1 1 7,605 ctdprd51.pub1.reference_party_role 1 0 13,222 0 3 0 0 1 0 281 ctdprd51.edit.db_link 1 0 7,395 0 3 0 0 3,568 1 218,907 ctdprd51.pub1.term_label 1 0 164,637 0 5 0 0 82,269 3 4,878,684 ctdprd51.pub1.exp_event_project 1 0 2,007 0 3 0 0 981 1 66,298 ctdprd51.pub1.exp_receptor 1 0 7,144 0 3 0 0 3,544 1 217,515 ctdprd51.pg_toast.pg_toast_4790070 1 1 90 0 3 0 0 49 9 11,890 ctdprd51.pub1.term_pathway 1 0 3,337 0 3 0 0 1 1 2,649 ctdprd51.pub1.gene_taxon 1 0 122,200 0 5 0 0 61,044 2 3,618,212 ctdprd51.pub1.dag_edge 1 0 1,053 0 5 0 0 482 2 40,381 ctdprd51.pub1.exp_study_factor 1 0 79 0 15 0 0 11 2 16,064 ctdprd51.pub1.exp_anatomy 1 0 157 0 37 0 0 33 2 17,822 ctdprd51.pub1.exp_event_location 1 0 3,369 0 4 0 0 1,633 2 109,626 ctdprd51.pub1.gene_chem_ref_gene_form 1 0 31,151 0 3 0 0 15,540 2 928,459 ctdprd51.pub1.gene_go_annot 1 0 454,292 0 197,026 0 0 227,042 8 13,455,987 ctdprd51.pub1.exp_event 1 0 12,158 0 4 0 0 6,001 2 365,574 ctdprd51.pub1.slim_term_mapping 1 0 632 0 4 0 0 261 2 26,182 ctdprd51.edit.action_degree 1 1 56 0 2 0 0 16 1 10,625 ctdprd51.pub1.exp_receptor_race 1 0 1,312 0 3 0 0 621 1 45,058 ctdprd51.pg_catalog.pg_trigger 1 1 390 0 40 0 0 175 35 146,303 ctdprd51.pg_catalog.pg_index 1 1 193 0 17 0 0 113 15 59,254 ctdprd51.pub1.reference_party 1 0 5,081 0 3 0 0 1 1 2,645 ctdprd51.edit.db_report 1 1 112 0 8 0 0 13 5 25,012 ctdprd51.pub1.exposure 1 0 3,593 0 3 0 0 1,743 1 111,256 ctdprd51.pub1.db_link 1 0 212,726 0 94,001 0 0 106,245 4 6,301,465 ctdprd51.pub1.gene_gene 1 0 11,623 0 5 0 0 5,759 2 351,108 ctdprd51.pg_catalog.pg_constraint 1 1 305 0 36 0 0 143 30 132,963 ctdprd51.edit.reference_db_link 1 0 7,161 0 4 0 0 3,568 1 218,838 ctdprd51.pub1.exp_outcome 1 0 568 0 4 0 0 210 2 24,501 ctdprd51.pub1.ixn 1 1 1,407,587 0 85 0 0 938,040 41,009 213,114,990 ctdprd51.pub1.term_comp_agent 1 0 160 0 4 0 0 36 2 14,299 ctdprd51.pub1.gene_gene_reference 1 0 29,270 0 3 0 0 14,559 1 867,400 ctdprd51.pub1.img 1 0 1,100 0 5 0 0 520 2 42,287 ctdprd51.pub1.reference_exp 1 0 322 0 3 0 0 124 1 15,735 ctdprd51.pub1.exp_receptor_gender 1 0 2,620 0 3 0 0 1,295 1 84,824 ctdprd51.pub1.exp_stressor 1 0 5,909 0 3 0 0 2,925 1 180,994 ctdprd51.pub1.term_reference 1 0 35,739 0 5 0 0 17,815 2 1,061,872 ctdprd51.pg_catalog.pg_shdepend 1 1 228 0 19 0 0 110 18 83,939 ctdprd51.pub1.exp_receptor_tobacco_use 1 0 1,164 0 3 0 0 547 1 40,692 ctdprd51.pub1.db 1 1 146 0 3 0 0 17 1 11,378 ctdprd51.pub1.gene_gene_ref_throughput 1 0 14,003 0 3 0 0 6,979 1 420,180 ctdprd51.pub1.exp_stressor_stressor_src 1 0 2,540 0 4 0 0 1,241 1 81,638 ctdprd51.pg_catalog.pg_depend 1 1 698 0 51 0 65 314 62 220,838 ctdprd51.pub1.exp_event_assay_method 1 0 4,707 0 4 0 0 2,308 2 152,047 Total 181 54 10,086,550 487,301 1,947,406 3 31,016 6,147,794 1,257,990 4,478,199,073 Tuples removed per table
Key values
- pub1.gene_disease (32587930) Main table with removed tuples on database ctdprd51
- 59236427 tuples Total removed
Index Tuples Pages Table Vacuums scans removed remain not yet removable removed remain ctdprd51.pub1.gene_disease 1 1 32,587,930 32,587,930 0 0 479,235 ctdprd51.pub1.phenotype_term 2 2 19,447,739 6,473,114 0 0 242,252 ctdprd51.pub1.chem_disease 1 1 3,276,111 3,276,111 0 0 48,128 ctdprd51.pub1.term 4 2 2,074,391 6,265,293 0 0 381,835 ctdprd51.pub1.dag_node 2 1 1,698,893 3,383,696 0 0 122,344 ctdprd51.pub1.reference 3 2 69,216 587,094 0 0 199,255 ctdprd51.pub1.ixn 1 1 51,678 2,183,999 0 0 515,515 ctdprd51.pg_toast.pg_toast_2619 3 3 12,306 62,101 0 0 37,776 ctdprd51.pubc.log_query 98 20 7,828 879,662 146,202 0 26,581 ctdprd51.pg_catalog.pg_attribute 2 2 3,153 18,321 0 0 488 ctdprd51.pg_catalog.pg_depend 1 1 2,190 14,296 0 0 145 ctdprd51.pg_catalog.pg_statistic 4 4 1,736 7,941 0 0 1,160 ctdprd51.pg_catalog.pg_shdepend 1 1 713 2,222 0 0 24 ctdprd51.pg_catalog.pg_trigger 1 1 694 1,897 0 0 57 ctdprd51.pg_catalog.pg_class 4 4 499 7,622 0 0 239 ctdprd51.pg_catalog.pg_index 1 1 321 1,244 0 0 41 ctdprd51.pg_catalog.pg_constraint 1 1 279 930 0 0 44 ctdprd51.pg_catalog.pg_type 2 2 262 2,414 0 0 70 ctdprd51.edit.action_degree 1 1 208 219 0 0 6 ctdprd51.pub1.db 1 1 130 130 0 0 6 ctdprd51.edit.db_report 1 1 80 158 0 0 4 ctdprd51.pg_toast.pg_toast_4790070 1 1 70 69 0 0 21 ctdprd51.pg_toast.pg_toast_4790139 1 0 0 233,392 0 0 43,153 ctdprd51.pub1.reference_party_role 1 0 0 1,212,784 0 0 6,556 ctdprd51.edit.db_link 1 0 0 320,321 0 0 3,567 ctdprd51.pub1.term_label 1 0 0 5,555,300 0 0 82,268 ctdprd51.pub1.exp_event_project 1 0 0 93,963 0 0 980 ctdprd51.pub2.term_set_enrichment_agent 2 0 0 255,776,398 0 0 2,906,551 ctdprd51.pub1.exp_receptor 1 0 0 188,362 0 0 3,543 ctdprd51.pub1.term_pathway 1 0 0 135,792 0 0 1,613 ctdprd51.pub1.gene_taxon 1 0 0 9,583,816 0 0 61,043 ctdprd51.pub1.dag_edge 1 0 0 88,931 0 0 481 ctdprd51.pub1.exp_study_factor 1 0 0 1,605 0 0 10 ctdprd51.pub1.exp_anatomy 1 0 0 3,707 0 0 32 ctdprd51.pub1.exp_event_location 1 0 0 246,037 0 0 1,632 ctdprd51.pub1.gene_chem_ref_gene_form 1 0 0 2,868,666 0 0 15,539 ctdprd51.pub1.gene_go_annot 1 0 0 35,647,576 0 0 227,041 ctdprd51.pub1.exp_event 1 0 0 204,875 0 0 6,000 ctdprd51.pub1.slim_term_mapping 1 0 0 32,777 0 0 260 ctdprd51.pub1.exp_receptor_race 1 0 0 95,732 0 0 620 ctdprd51.pub1.reference_party 1 0 0 445,655 0 0 2,489 ctdprd51.pub1.exposure 1 0 0 211,632 0 0 1,742 ctdprd51.pub1.db_link 1 0 0 14,742,300 0 0 106,244 ctdprd51.pub1.gene_gene 1 0 0 1,065,224 0 0 5,758 ctdprd51.edit.reference_db_link 1 0 0 320,321 0 0 3,567 ctdprd51.pub1.exp_outcome 1 0 0 10,209 0 0 209 ctdprd51.pub1.term_comp_agent 1 0 0 3,634 0 0 35 ctdprd51.pub1.gene_gene_reference 1 0 0 1,336,788 0 0 14,558 ctdprd51.pub1.img 1 0 0 50,342 0 0 519 ctdprd51.pub1.reference_exp 1 0 0 3,409 0 0 123 ctdprd51.pub1.exp_receptor_gender 1 0 0 184,468 0 0 1,294 ctdprd51.pub1.exp_stressor 1 0 0 204,875 0 0 2,924 ctdprd51.pub1.term_reference 1 0 0 3,295,457 0 0 17,814 ctdprd51.pg_toast.pg_toast_486223 2 0 0 8 0 0 3 ctdprd51.pub2.term_set_enrichment 2 0 0 3,616,235 0 0 59,877 ctdprd51.pub1.term_set_enrichment 2 0 0 33,091 0 0 550 ctdprd51.pub1.exp_receptor_tobacco_use 1 0 0 77,488 0 0 546 ctdprd51.pub1.gene_gene_ref_throughput 1 0 0 1,342,379 0 0 6,978 ctdprd51.pub1.exp_stressor_stressor_src 1 0 0 280,158 0 0 1,240 ctdprd51.pub1.term_set_enrichment_agent 3 0 0 2,003,872 0 0 22,775 ctdprd51.pub1.exp_event_assay_method 1 0 0 231,998 0 0 2,307 Total 181 54 59,236,427 397,506,040 146,202 0 5,667,667 Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Pages removed per tables
NO DATASET
Table Number of vacuums Index scans Tuples removed Pages removed ctdprd51.pub1.phenotype_term 2 2 19447739 0 ctdprd51.pub1.gene_disease 1 1 32587930 0 ctdprd51.pub1.chem_disease 1 1 3276111 0 ctdprd51.pub1.reference 3 2 69216 0 ctdprd51.pg_toast.pg_toast_4790139 1 0 0 0 ctdprd51.pub1.reference_party_role 1 0 0 0 ctdprd51.edit.db_link 1 0 0 0 ctdprd51.pub1.term_label 1 0 0 0 ctdprd51.pub1.exp_event_project 1 0 0 0 ctdprd51.pub2.term_set_enrichment_agent 2 0 0 0 ctdprd51.pub1.exp_receptor 1 0 0 0 ctdprd51.pg_toast.pg_toast_4790070 1 1 70 0 ctdprd51.pub1.term_pathway 1 0 0 0 ctdprd51.pg_toast.pg_toast_2619 3 3 12306 0 ctdprd51.pub1.gene_taxon 1 0 0 0 ctdprd51.pg_catalog.pg_class 4 4 499 0 ctdprd51.pub1.term 4 2 2074391 0 ctdprd51.pubc.log_query 98 20 7828 0 ctdprd51.pub1.dag_edge 1 0 0 0 ctdprd51.pub1.exp_study_factor 1 0 0 0 ctdprd51.pub1.exp_anatomy 1 0 0 0 ctdprd51.pub1.exp_event_location 1 0 0 0 ctdprd51.pub1.gene_chem_ref_gene_form 1 0 0 0 ctdprd51.pub1.gene_go_annot 1 0 0 0 ctdprd51.pub1.exp_event 1 0 0 0 ctdprd51.pg_catalog.pg_type 2 2 262 0 ctdprd51.pg_catalog.pg_statistic 4 4 1736 0 ctdprd51.pub1.slim_term_mapping 1 0 0 0 ctdprd51.edit.action_degree 1 1 208 0 ctdprd51.pub1.exp_receptor_race 1 0 0 0 ctdprd51.pg_catalog.pg_trigger 1 1 694 0 ctdprd51.pg_catalog.pg_index 1 1 321 0 ctdprd51.pub1.reference_party 1 0 0 0 ctdprd51.edit.db_report 1 1 80 0 ctdprd51.pub1.exposure 1 0 0 0 ctdprd51.pub1.db_link 1 0 0 0 ctdprd51.pub1.gene_gene 1 0 0 0 ctdprd51.pg_catalog.pg_constraint 1 1 279 0 ctdprd51.edit.reference_db_link 1 0 0 0 ctdprd51.pub1.exp_outcome 1 0 0 0 ctdprd51.pub1.ixn 1 1 51678 0 ctdprd51.pub1.term_comp_agent 1 0 0 0 ctdprd51.pub1.gene_gene_reference 1 0 0 0 ctdprd51.pub1.img 1 0 0 0 ctdprd51.pub1.reference_exp 1 0 0 0 ctdprd51.pub1.exp_receptor_gender 1 0 0 0 ctdprd51.pub1.exp_stressor 1 0 0 0 ctdprd51.pub1.dag_node 2 1 1698893 0 ctdprd51.pub1.term_reference 1 0 0 0 ctdprd51.pg_catalog.pg_shdepend 1 1 713 0 ctdprd51.pg_toast.pg_toast_486223 2 0 0 0 ctdprd51.pub2.term_set_enrichment 2 0 0 0 ctdprd51.pg_catalog.pg_attribute 2 2 3153 0 ctdprd51.pub1.term_set_enrichment 2 0 0 0 ctdprd51.pub1.exp_receptor_tobacco_use 1 0 0 0 ctdprd51.pub1.db 1 1 130 0 ctdprd51.pub1.gene_gene_ref_throughput 1 0 0 0 ctdprd51.pub1.exp_stressor_stressor_src 1 0 0 0 ctdprd51.pub1.term_set_enrichment_agent 3 0 0 0 ctdprd51.pg_catalog.pg_depend 1 1 2190 0 ctdprd51.pub1.exp_event_assay_method 1 0 0 0 Total 181 54 59,236,427 0 Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Mar 24 00 0 0 01 0 2 02 0 1 03 0 2 04 0 2 05 0 4 06 0 0 07 0 1 08 0 1 09 0 0 10 0 1 11 0 0 12 0 1 13 0 0 14 0 0 15 0 0 16 0 1 17 0 0 18 0 0 19 0 0 20 0 0 21 0 1 22 0 0 23 0 1 Mar 25 00 0 0 01 0 1 02 0 1 03 0 1 04 0 3 05 0 3 06 0 1 07 0 0 08 0 2 09 0 0 10 0 1 11 0 1 12 0 0 13 0 1 14 0 0 15 0 0 16 0 1 17 0 0 18 0 0 19 0 0 20 0 0 21 0 1 22 0 0 23 0 1 Mar 26 00 0 0 01 0 2 02 0 2 03 0 3 04 0 2 05 0 3 06 0 0 07 0 1 08 0 0 09 0 1 10 0 1 11 0 0 12 0 1 13 0 0 14 0 0 15 0 1 16 0 0 17 0 0 18 0 0 19 0 0 20 0 1 21 0 0 22 0 0 23 0 1 Mar 27 00 0 1 01 0 1 02 0 2 03 0 1 04 0 1 05 0 3 06 0 1 07 0 0 08 0 2 09 0 1 10 0 1 11 0 0 12 0 20 13 0 2 14 0 0 15 0 15 16 0 3 17 0 19 18 0 0 19 0 1 20 0 0 21 0 0 22 0 2 23 0 29 Mar 28 00 0 0 01 0 4 02 0 2 03 0 6 04 0 0 05 0 7 06 0 1 07 0 0 08 0 1 09 0 1 10 0 0 11 0 1 12 0 8 13 0 0 14 0 0 15 0 1 16 0 0 17 0 0 18 0 0 19 0 1 20 0 0 21 0 0 22 0 1 23 0 0 Mar 29 00 0 6 01 0 3 02 0 5 03 0 2 04 0 3 05 0 3 06 0 0 07 0 1 08 0 0 09 0 1 10 0 0 11 0 1 12 0 1 13 0 0 14 0 0 15 0 1 16 0 1 17 0 0 18 0 1 19 0 0 20 0 0 21 0 9 22 0 3 23 0 0 Mar 30 00 0 4 01 0 4 02 0 1 03 0 1 04 0 1 05 0 4 06 0 1 07 0 1 08 0 1 09 0 0 10 0 1 11 0 1 12 0 1 13 0 0 14 0 14 15 0 0 16 0 0 17 0 2 18 0 1 19 0 3 20 0 1 21 0 6 22 0 2 23 0 1 - 248.98 sec Highest CPU-cost vacuum
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Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
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Queries
Queries by type
Key values
- 5,046 Total read queries
- 2,943 Total write queries
Queries by database
Key values
- unknown Main database
- 5,895 Requests
- 20h53m20s (unknown)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 15,675 Requests
User Request type Count Duration editeu Total 6 21s543ms select 6 21s543ms load Total 72 46m45s others 2 5s288ms select 70 46m39s postgres Total 108 38m36s copy to 108 38m36s pub1 Total 18 23m21s ddl 2 8s885ms insert 6 22m35s select 8 34s336ms tcl 2 2s861ms pub2 Total 4 4s878ms select 4 4s878ms pubeu Total 4,717 9h12m24s cte 1,346 52m39s select 3,371 8h19m44s qaeu Total 139 1h30m46s cte 19 1m6s select 120 1h29m40s unknown Total 15,675 1d21h25m15s copy to 667 6h18m4s cte 6,232 3h57m25s ddl 101 1h14m58s insert 51 1h14m53s others 40 54m38s select 8,566 1d6h40m46s update 18 1h4m28s zbx_monitor Total 1 2s706ms select 1 2s706ms Duration by user
Key values
- 1d21h25m15s (unknown) Main time consuming user
User Request type Count Duration editeu Total 6 21s543ms select 6 21s543ms load Total 72 46m45s others 2 5s288ms select 70 46m39s postgres Total 108 38m36s copy to 108 38m36s pub1 Total 18 23m21s ddl 2 8s885ms insert 6 22m35s select 8 34s336ms tcl 2 2s861ms pub2 Total 4 4s878ms select 4 4s878ms pubeu Total 4,717 9h12m24s cte 1,346 52m39s select 3,371 8h19m44s qaeu Total 139 1h30m46s cte 19 1m6s select 120 1h29m40s unknown Total 15,675 1d21h25m15s copy to 667 6h18m4s cte 6,232 3h57m25s ddl 101 1h14m58s insert 51 1h14m53s others 40 54m38s select 8,566 1d6h40m46s update 18 1h4m28s zbx_monitor Total 1 2s706ms select 1 2s706ms Queries by host
Key values
- unknown Main host
- 20,740 Requests
- 2d9h57m40s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 7,936 Requests
- 1d1h50m15s (unknown)
- Main time consuming application
Application Request type Count Duration pgAdmin 4 - CONN:7243206 Total 1 1s430ms tcl 1 1s430ms pgAdmin 4 - DB:ctdprd51 Total 1 1s422ms select 1 1s422ms pg_bulkload Total 27 13m29s select 27 13m29s pg_dump Total 49 17m37s copy to 49 17m37s psql Total 5 15s293ms ddl 1 4s442ms select 4 10s850ms unknown Total 7,936 1d1h50m15s copy to 251 1h44m6s cte 2,551 1h37m57s ddl 52 37m56s insert 29 50m5s others 30 51m51s select 5,014 19h36m4s update 9 32m14s Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2024-03-28 09:11:43 Date
Number of cancelled queries (5 minutes period)
NO DATASET
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Top Queries
Histogram of query times
Key values
- 7,582 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 1h55m8s select pub1.maint_term_derive_data ();[ Date: 2024-03-28 05:06:11 - Bind query: yes ]
2 1h32m42s select pub1.maint_gene_chem_ref_gene_form_refresh ();[ Date: 2024-03-28 01:17:15 - Bind query: yes ]
3 59m23s SELECT maint_term_derive_nm_fts ();[ Date: 2024-03-28 02:19:28 - Bind query: yes ]
4 45m57s VACUUM FULL ANALYZE;[ Date: 2024-03-28 03:10:40 - Bind query: yes ]
5 35m48s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');[ Date: 2024-03-27 19:38:27 - Bind query: yes ]
6 35m41s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');[ Date: 2024-03-27 20:14:14 - Bind query: yes ]
7 35m34s select pub1.maint_cached_value_refresh_data_metrics ();[ Date: 2024-03-28 05:52:06 - Bind query: yes ]
8 33m58s SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;[ Date: 2024-03-27 18:13:08 - Bind query: yes ]
9 33m29s SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;[ Date: 2024-03-28 13:03:28 - Database: ctdprd51 - User: qaeu - Bind query: yes ]
10 24m20s update pub1.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));[ Date: 2024-03-27 23:39:25 - Bind query: yes ]
11 23m15s COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2024-03-30 19:00:00 ]
12 23m3s COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2024-03-30 19:39:38 ]
13 21m15s insert into pub1.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;[ Date: 2024-03-27 17:31:16 - Bind query: yes ]
14 18m14s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-03-29 12:30:18 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
15 17m26s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1230239') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-03-30 01:18:38 - Bind query: yes ]
16 17m22s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-03-28 14:20:16 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
17 17m19s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2024-03-30 00:17:20 ]
18 17m15s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-03-24 13:19:11 - Bind query: yes ]
19 17m7s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1230239') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-03-30 22:13:03 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
20 17m2s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-03-27 11:20:14 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 2h46m9s 61 1s376ms 18m14s 2m43s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Mar 24 03 1 1s500ms 1s500ms 09 1 3s125ms 3s125ms 13 1 17m15s 17m15s 16 1 3s18ms 3s18ms 19 1 1s962ms 1s962ms 22 3 10s725ms 3s575ms Mar 25 00 1 3s122ms 3s122ms 04 1 1s666ms 1s666ms 06 1 8m23s 8m23s 08 1 8m23s 8m23s 09 1 3s160ms 3s160ms 10 2 4s607ms 2s303ms 18 1 3s103ms 3s103ms 22 1 1s557ms 1s557ms 23 1 1s958ms 1s958ms Mar 26 04 1 1s571ms 1s571ms 08 1 2s879ms 2s879ms 09 1 1s376ms 1s376ms 10 1 3s101ms 3s101ms 19 1 1s949ms 1s949ms 23 2 6s426ms 3s213ms Mar 27 11 1 17m2s 17m2s 16 1 1s973ms 1s973ms 17 1 1s687ms 1s687ms 19 1 1s614ms 1s614ms 21 1 3s193ms 3s193ms Mar 28 02 1 3s643ms 3s643ms 03 1 1s464ms 1s464ms 09 1 4m25s 4m25s 13 1 3m35s 3m35s 14 1 17m22s 17m22s 17 2 5s136ms 2s568ms 19 1 1s671ms 1s671ms Mar 29 01 1 1s464ms 1s464ms 02 1 1s405ms 1s405ms 04 1 5m6s 5m6s 11 1 3s104ms 3s104ms 12 4 28m30s 7m7s 13 1 2s882ms 2s882ms 15 1 1s381ms 1s381ms 16 1 1s880ms 1s880ms Mar 30 00 1 3s90ms 3s90ms 01 2 25m55s 12m57s 02 1 3s78ms 3s78ms 03 2 3s100ms 1s550ms 10 1 1s435ms 1s435ms 15 1 2s975ms 2s975ms 20 1 11s573ms 11s573ms 21 1 3s64ms 3s64ms 22 1 17m7s 17m7s 23 1 11m2s 11m2s [ User: pubeu - Total duration: 1h24m6s - Times executed: 29 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-29 12:30:18 Duration: 18m14s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1230239') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-30 01:18:38 Duration: 17m26s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-28 14:20:16 Duration: 17m22s Database: ctdprd51 User: pubeu Bind query: yes
2 1h55m8s 1 1h55m8s 1h55m8s 1h55m8s select pub1.maint_term_derive_data ();Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Mar 28 05 1 1h55m8s 1h55m8s -
select pub1.maint_term_derive_data ();
Date: 2024-03-28 05:06:11 Duration: 1h55m8s Bind query: yes
3 1h47m5s 7 14m53s 17m19s 15m17s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Mar 24 00 1 14m54s 14m54s Mar 25 00 1 14m53s 14m53s Mar 26 00 1 14m56s 14m56s Mar 27 00 1 14m55s 14m55s Mar 28 00 1 15m12s 15m12s Mar 29 00 1 14m55s 14m55s Mar 30 00 1 17m19s 17m19s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-03-30 00:17:20 Duration: 17m19s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-03-28 00:15:13 Duration: 15m12s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-03-26 00:14:58 Duration: 14m56s
4 1h37m51s 2,548 1s4ms 4s85ms 2s304ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Mar 24 05 4 8s814ms 2s203ms 21 3 9s351ms 3s117ms Mar 25 05 4 8s837ms 2s209ms 09 1 3s310ms 3s310ms 13 1 1s944ms 1s944ms 14 2 6s652ms 3s326ms 17 1 2s550ms 2s550ms 20 1 3s276ms 3s276ms Mar 26 05 4 8s877ms 2s219ms 11 2 6s762ms 3s381ms Mar 27 00 1 2s444ms 2s444ms 05 4 8s797ms 2s199ms 06 2 5s327ms 2s663ms 10 1 3s262ms 3s262ms 16 16 36s478ms 2s279ms 17 28 1m5s 2s348ms 18 29 1m6s 2s295ms 19 15 34s533ms 2s302ms 20 21 50s785ms 2s418ms 21 30 1m9s 2s308ms 22 25 1m2s 2s505ms 23 10 22s951ms 2s295ms Mar 28 00 5 13s790ms 2s758ms 01 1 2s361ms 2s361ms 02 2 6s208ms 3s104ms 03 2 4s200ms 2s100ms 04 1 2s213ms 2s213ms 05 20 49s432ms 2s471ms 06 14 34s756ms 2s482ms 07 4 9s147ms 2s286ms 08 7 16s808ms 2s401ms 09 4 8s949ms 2s237ms 10 5 10s685ms 2s137ms 11 5 12s412ms 2s482ms 14 18 42s616ms 2s367ms 15 22 51s187ms 2s326ms 16 20 44s334ms 2s216ms 17 7 14s609ms 2s87ms 19 1 1s852ms 1s852ms 20 3 7s314ms 2s438ms 21 3 6s422ms 2s140ms 22 6 15s107ms 2s517ms Mar 29 05 4 8s989ms 2s247ms 06 1 2s123ms 2s123ms 07 3 7s380ms 2s460ms 08 5 11s519ms 2s303ms 09 3 7s29ms 2s343ms 12 7 15s712ms 2s244ms 13 2 5s173ms 2s586ms 14 14 27s638ms 1s974ms 15 23 52s982ms 2s303ms 16 28 1m3s 2s275ms 17 26 58s377ms 2s245ms 18 7 17s589ms 2s512ms 19 8 19s509ms 2s438ms 20 7 16s862ms 2s408ms 21 6 14s120ms 2s353ms Mar 30 01 1 2s157ms 2s157ms 02 7 16s819ms 2s402ms 03 3 9s441ms 3s147ms 05 32 1m12s 2s258ms 06 1 1s777ms 1s777ms 07 22 51s871ms 2s357ms 08 111 4m8s 2s241ms 09 145 5m27s 2s255ms 10 152 5m46s 2s277ms 11 189 7m7s 2s263ms 12 240 9m7s 2s280ms 13 310 11m54s 2s305ms 15 343 13m18s 2s327ms 16 390 14m59s 2s306ms 19 46 1m45s 2s292ms 20 57 2m9s 2s264ms [ User: pubeu - Total duration: 18m44s - Times executed: 478 ]
[ User: qaeu - Total duration: 28s123ms - Times executed: 8 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '587019' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-03-28 05:40:12 Duration: 4s85ms Database: ctdprd51 User: qaeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '646767' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2024-03-27 22:53:34 Duration: 3s858ms Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '587019' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-03-28 05:35:15 Duration: 3s655ms Database: ctdprd51 User: pubeu Bind query: yes
5 1h32m42s 1 1h32m42s 1h32m42s 1h32m42s select pub1.maint_gene_chem_ref_gene_form_refresh ();Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Mar 28 01 1 1h32m42s 1h32m42s -
select pub1.maint_gene_chem_ref_gene_form_refresh ();
Date: 2024-03-28 01:17:15 Duration: 1h32m42s Bind query: yes
6 59m23s 1 59m23s 59m23s 59m23s select maint_term_derive_nm_fts ();Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Mar 28 02 1 59m23s 59m23s -
SELECT maint_term_derive_nm_fts ();
Date: 2024-03-28 02:19:28 Duration: 59m23s Bind query: yes
7 47m49s 5 9m25s 9m59s 9m33s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by diseaseterm.nm_sort, phenotypeterm.nm_sort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Mar 27 17 5 47m49s 9m33s [ User: pubeu - Total duration: 9m27s - Times executed: 1 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:47:32 Duration: 9m59s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:46:57 Duration: 9m28s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:46:55 Duration: 9m27s Database: ctdprd51 User: pubeu Bind query: yes
8 46m12s 175 2s480ms 33m29s 15s844ms select g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(r.acc_txt, ? order by r.acc_txt) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id group by g.nm, g.acc_txt, d.nm, d.acc_db_cd || ? || d.acc_txt, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by g.nm, d.nm;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Mar 28 13 175 46m12s 15s844ms [ User: qaeu - Total duration: 33m29s - Times executed: 1 ]
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-03-28 13:03:28 Duration: 33m29s Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-03-28 13:22:06 Duration: 5s848ms Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-03-28 13:28:10 Duration: 5s667ms Bind query: yes
9 45m57s 1 45m57s 45m57s 45m57s vacuum full analyze;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Mar 28 03 1 45m57s 45m57s -
VACUUM FULL ANALYZE;
Date: 2024-03-28 03:10:40 Duration: 45m57s Bind query: yes
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VACUUM FULL ANALYZE;
Date: 2024-03-28 02:24:43 Duration: 0ms
10 42m59s 76 1s11ms 6m24s 33s938ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Mar 27 15 31 12m28s 24s129ms 16 12 7m21s 36s785ms 18 6 1m6s 11s71ms 20 5 14m6s 2m49s 21 1 26s628ms 26s628ms 22 18 7m7s 23s743ms 23 3 22s842ms 7s614ms [ User: load - Total duration: 13m29s - Times executed: 27 ]
[ Application: pg_bulkload - Total duration: 13m29s - Times executed: 27 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-03-27 20:24:57 Duration: 6m24s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-03-27 20:52:22 Duration: 5m21s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-03-27 15:49:25 Duration: 3m24s Bind query: yes
11 36m15s 530 1s1ms 1m23s 4s104ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Mar 24 00 2 3s989ms 1s994ms 01 3 11s141ms 3s713ms 02 6 18s98ms 3s16ms 03 4 19s531ms 4s882ms 04 4 16s6ms 4s1ms 05 5 15s143ms 3s28ms 06 4 11s626ms 2s906ms 07 2 4s188ms 2s94ms 08 4 20s236ms 5s59ms 09 3 11s689ms 3s896ms 10 2 6s613ms 3s306ms 11 3 10s487ms 3s495ms 12 2 6s704ms 3s352ms 13 6 14s872ms 2s478ms 14 6 19s784ms 3s297ms 15 2 6s256ms 3s128ms 16 2 5s699ms 2s849ms 17 8 24s318ms 3s39ms 18 3 13s812ms 4s604ms 19 3 14s967ms 4s989ms 20 7 47s557ms 6s793ms 21 5 11s330ms 2s266ms 22 7 18s628ms 2s661ms 23 8 22s660ms 2s832ms Mar 25 00 4 11s256ms 2s814ms 01 3 8s21ms 2s673ms 02 4 9s401ms 2s350ms 03 3 12s28ms 4s9ms 04 10 44s84ms 4s408ms 05 4 13s557ms 3s389ms 06 9 1m17s 8s664ms 07 6 46s587ms 7s764ms 08 9 30s762ms 3s418ms 09 8 24s469ms 3s58ms 10 3 16s276ms 5s425ms 11 5 16s226ms 3s245ms 12 13 1m 4s649ms 13 7 35s974ms 5s139ms 14 4 17s683ms 4s420ms 15 3 7s206ms 2s402ms 16 6 14s48ms 2s341ms 17 9 30s690ms 3s410ms 18 7 14s196ms 2s28ms 19 5 14s89ms 2s817ms 20 6 38s634ms 6s439ms 21 2 4s36ms 2s18ms 22 5 27s403ms 5s480ms 23 4 16s826ms 4s206ms Mar 26 00 1 2s201ms 2s201ms 01 7 21s689ms 3s98ms 02 3 14s33ms 4s677ms 03 6 21s471ms 3s578ms 04 8 27s172ms 3s396ms 05 2 7s204ms 3s602ms 06 6 14s331ms 2s388ms 07 7 15s985ms 2s283ms 08 3 6s739ms 2s246ms 09 2 18s759ms 9s379ms 10 6 15s108ms 2s518ms 11 5 24s64ms 4s812ms 12 1 1s100ms 1s100ms 13 1 1s55ms 1s55ms 16 1 2s703ms 2s703ms 19 1 1s199ms 1s199ms 23 1 11s972ms 11s972ms Mar 27 03 2 5s26ms 2s513ms 04 2 3s960ms 1s980ms 05 1 2s18ms 2s18ms 06 1 5s18ms 5s18ms 07 1 2s166ms 2s166ms 08 1 1s379ms 1s379ms 10 2 5s361ms 2s680ms 11 2 5s421ms 2s710ms 12 1 4s318ms 4s318ms 13 4 25s875ms 6s468ms 14 4 13s828ms 3s457ms 16 2 5s509ms 2s754ms 17 1 2s318ms 2s318ms 19 1 7s233ms 7s233ms 20 2 4s453ms 2s226ms 21 2 4s327ms 2s163ms Mar 28 00 3 9s645ms 3s215ms 01 3 13s400ms 4s466ms 02 1 1s74ms 1s74ms 03 3 3s754ms 1s251ms 04 4 10s419ms 2s604ms 05 1 2s572ms 2s572ms 06 1 2s293ms 2s293ms 07 3 12s36ms 4s12ms 08 1 1s873ms 1s873ms 09 5 13s979ms 2s795ms 10 3 25s748ms 8s582ms 11 1 3s107ms 3s107ms 12 2 3s948ms 1s974ms 13 2 6s282ms 3s141ms 14 4 14s483ms 3s620ms 15 3 7s864ms 2s621ms 17 4 25s389ms 6s347ms 18 1 2s270ms 2s270ms 19 2 6s407ms 3s203ms 21 3 11s983ms 3s994ms 22 3 8s204ms 2s734ms 23 8 13s834ms 1s729ms Mar 29 00 3 6s182ms 2s60ms 01 4 14s155ms 3s538ms 02 1 5s478ms 5s478ms 03 3 5s349ms 1s783ms 04 1 1s227ms 1s227ms 05 4 17s180ms 4s295ms 06 1 6s632ms 6s632ms 07 2 7s800ms 3s900ms 09 6 37s287ms 6s214ms 10 1 2s233ms 2s233ms 11 2 9s936ms 4s968ms 12 11 3m 16s402ms 13 1 2s597ms 2s597ms 14 4 10s188ms 2s547ms 15 1 1s350ms 1s350ms 16 2 4s149ms 2s74ms 17 2 8s209ms 4s104ms 20 2 5s766ms 2s883ms 21 3 9s569ms 3s189ms 22 1 1s159ms 1s159ms 23 5 22s944ms 4s588ms Mar 30 00 11 56s989ms 5s180ms 01 22 2m23s 6s533ms 02 1 3s145ms 3s145ms 03 3 8s311ms 2s770ms 04 2 2s701ms 1s350ms 07 5 11s545ms 2s309ms 09 4 5s47ms 1s261ms 10 1 2s238ms 2s238ms 11 2 5s430ms 2s715ms 12 1 1s240ms 1s240ms 13 3 11s203ms 3s734ms 14 4 21s551ms 5s387ms 15 1 5s173ms 5s173ms 16 4 16s712ms 4s178ms 17 3 20s262ms 6s754ms 18 1 3s34ms 3s34ms 19 3 15s280ms 5s93ms 20 1 6s884ms 6s884ms 21 5 19s911ms 3s982ms 22 1 1s271ms 1s271ms 23 1 1s85ms 1s85ms [ User: pubeu - Total duration: 16m46s - Times executed: 253 ]
[ User: qaeu - Total duration: 1s790ms - Times executed: 1 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2047455') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-29 12:13:37 Duration: 1m23s Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2047310') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-29 12:12:50 Duration: 32s362ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2059246') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-29 12:12:42 Duration: 29s867ms Bind query: yes
12 35m48s 1 35m48s 35m48s 35m48s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.object_type where cd = ?), ptr.term_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.phenotype_term_reference ptr, pub1.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Mar 27 19 1 35m48s 35m48s -
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 19:38:27 Duration: 35m48s Bind query: yes
13 35m41s 1 35m41s 35m41s 35m41s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.gene_go_annot gga, pub1.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Mar 27 20 1 35m41s 35m41s -
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 20:14:14 Duration: 35m41s Bind query: yes
14 35m34s 1 35m34s 35m34s 35m34s select pub1.maint_cached_value_refresh_data_metrics ();Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Mar 28 05 1 35m34s 35m34s -
select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-03-28 05:52:06 Duration: 35m34s Bind query: yes
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select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-03-28 05:47:48 Duration: 0ms
15 33m58s 1 33m58s 33m58s 33m58s select i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) from edit.ixn i, edit.reference_ixn r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in (...) order by i.id asc;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Mar 27 18 1 33m58s 33m58s -
SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;
Date: 2024-03-27 18:13:08 Duration: 33m58s Bind query: yes
16 30m43s 10 3s679ms 4m29s 3m4s select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where diseaseterm.id = any (array ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?)) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Mar 25 11 1 7s309ms 7s309ms Mar 29 12 8 26m17s 3m17s 13 1 4m17s 4m17s [ User: pubeu - Total duration: 13m18s - Times executed: 6 ]
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where diseaseTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 3 and upper(baseTerm.nm) LIKE 'HYPERTENSION')) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-03-29 12:35:42 Duration: 4m29s Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where diseaseTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 3 and upper(baseTerm.nm) LIKE 'HYPERTENSION')) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-03-29 12:38:18 Duration: 4m22s Database: ctdprd51 User: pubeu Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where diseaseTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 3 and upper(baseTerm.nm) LIKE 'HYPERTENSION')) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-03-29 12:48:04 Duration: 4m19s Bind query: yes
17 24m20s 1 24m20s 24m20s 24m20s update pub1.gene_disease gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.gene_disease_reference gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.reference r where has_exposures = true));Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Mar 27 23 1 24m20s 24m20s -
update pub1.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));
Date: 2024-03-27 23:39:25 Duration: 24m20s Bind query: yes
18 23m15s 1 23m15s 23m15s 23m15s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Mar 30 19 1 23m15s 23m15s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2024-03-30 19:00:00 Duration: 23m15s
19 23m3s 1 23m3s 23m3s 23m3s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Mar 30 19 1 23m3s 23m3s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2024-03-30 19:39:38 Duration: 23m3s
20 21m15s 1 21m15s 21m15s 21m15s insert into pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.gene_go_annot;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Mar 27 17 1 21m15s 21m15s -
insert into pub1.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;
Date: 2024-03-27 17:31:16 Duration: 21m15s Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 2,548 1h37m51s 1s4ms 4s85ms 2s304ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Mar 24 05 4 8s814ms 2s203ms 21 3 9s351ms 3s117ms Mar 25 05 4 8s837ms 2s209ms 09 1 3s310ms 3s310ms 13 1 1s944ms 1s944ms 14 2 6s652ms 3s326ms 17 1 2s550ms 2s550ms 20 1 3s276ms 3s276ms Mar 26 05 4 8s877ms 2s219ms 11 2 6s762ms 3s381ms Mar 27 00 1 2s444ms 2s444ms 05 4 8s797ms 2s199ms 06 2 5s327ms 2s663ms 10 1 3s262ms 3s262ms 16 16 36s478ms 2s279ms 17 28 1m5s 2s348ms 18 29 1m6s 2s295ms 19 15 34s533ms 2s302ms 20 21 50s785ms 2s418ms 21 30 1m9s 2s308ms 22 25 1m2s 2s505ms 23 10 22s951ms 2s295ms Mar 28 00 5 13s790ms 2s758ms 01 1 2s361ms 2s361ms 02 2 6s208ms 3s104ms 03 2 4s200ms 2s100ms 04 1 2s213ms 2s213ms 05 20 49s432ms 2s471ms 06 14 34s756ms 2s482ms 07 4 9s147ms 2s286ms 08 7 16s808ms 2s401ms 09 4 8s949ms 2s237ms 10 5 10s685ms 2s137ms 11 5 12s412ms 2s482ms 14 18 42s616ms 2s367ms 15 22 51s187ms 2s326ms 16 20 44s334ms 2s216ms 17 7 14s609ms 2s87ms 19 1 1s852ms 1s852ms 20 3 7s314ms 2s438ms 21 3 6s422ms 2s140ms 22 6 15s107ms 2s517ms Mar 29 05 4 8s989ms 2s247ms 06 1 2s123ms 2s123ms 07 3 7s380ms 2s460ms 08 5 11s519ms 2s303ms 09 3 7s29ms 2s343ms 12 7 15s712ms 2s244ms 13 2 5s173ms 2s586ms 14 14 27s638ms 1s974ms 15 23 52s982ms 2s303ms 16 28 1m3s 2s275ms 17 26 58s377ms 2s245ms 18 7 17s589ms 2s512ms 19 8 19s509ms 2s438ms 20 7 16s862ms 2s408ms 21 6 14s120ms 2s353ms Mar 30 01 1 2s157ms 2s157ms 02 7 16s819ms 2s402ms 03 3 9s441ms 3s147ms 05 32 1m12s 2s258ms 06 1 1s777ms 1s777ms 07 22 51s871ms 2s357ms 08 111 4m8s 2s241ms 09 145 5m27s 2s255ms 10 152 5m46s 2s277ms 11 189 7m7s 2s263ms 12 240 9m7s 2s280ms 13 310 11m54s 2s305ms 15 343 13m18s 2s327ms 16 390 14m59s 2s306ms 19 46 1m45s 2s292ms 20 57 2m9s 2s264ms [ User: pubeu - Total duration: 18m44s - Times executed: 478 ]
[ User: qaeu - Total duration: 28s123ms - Times executed: 8 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '587019' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-03-28 05:40:12 Duration: 4s85ms Database: ctdprd51 User: qaeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '646767' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2024-03-27 22:53:34 Duration: 3s858ms Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '587019' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-03-28 05:35:15 Duration: 3s655ms Database: ctdprd51 User: pubeu Bind query: yes
2 933 17m57s 1s39ms 12s140ms 1s154ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Mar 24 03 1 1s126ms 1s126ms 05 5 5s745ms 1s149ms 06 1 1s128ms 1s128ms 07 1 1s102ms 1s102ms 09 1 1s106ms 1s106ms 13 2 2s244ms 1s122ms 14 1 1s113ms 1s113ms 16 1 1s138ms 1s138ms 22 1 1s117ms 1s117ms Mar 25 05 6 6s862ms 1s143ms 06 3 3s344ms 1s114ms 07 9 9s989ms 1s109ms 08 5 5s389ms 1s77ms 09 4 4s376ms 1s94ms 10 3 3s315ms 1s105ms 11 4 4s393ms 1s98ms 12 5 5s482ms 1s96ms 13 5 5s639ms 1s127ms 14 6 6s777ms 1s129ms 15 2 2s249ms 1s124ms 16 2 2s198ms 1s99ms 17 5 5s508ms 1s101ms 18 4 4s370ms 1s92ms 19 4 4s428ms 1s107ms 20 18 19s715ms 1s95ms 21 24 26s643ms 1s110ms 22 11 12s364ms 1s124ms 23 4 4s508ms 1s127ms Mar 26 00 2 2s218ms 1s109ms 02 4 4s418ms 1s104ms 03 3 3s296ms 1s98ms 04 3 3s352ms 1s117ms 05 5 5s673ms 1s134ms 07 1 1s92ms 1s92ms 08 2 2s182ms 1s91ms 10 1 1s135ms 1s135ms 11 1 1s118ms 1s118ms 12 2 2s165ms 1s82ms 13 1 1s86ms 1s86ms 14 1 1s83ms 1s83ms 21 2 2s180ms 1s90ms Mar 27 05 2 2s402ms 1s201ms 06 1 1s86ms 1s86ms 07 1 1s71ms 1s71ms 08 3 3s201ms 1s67ms 11 1 1s85ms 1s85ms 16 4 4s509ms 1s127ms 17 1 1s119ms 1s119ms 18 3 3s295ms 1s98ms 21 1 1s139ms 1s139ms 22 2 2s312ms 1s156ms Mar 28 00 1 1s113ms 1s113ms 01 1 1s143ms 1s143ms 02 2 2s355ms 1s177ms 03 2 2s258ms 1s129ms 05 2 2s448ms 1s224ms 07 2 2s313ms 1s156ms 12 2 2s278ms 1s139ms 14 2 2s194ms 1s97ms 15 1 1s91ms 1s91ms 17 1 1s107ms 1s107ms 19 1 1s129ms 1s129ms 20 2 2s231ms 1s115ms 21 2 2s224ms 1s112ms 22 2 2s250ms 1s125ms 23 9 10s469ms 1s163ms Mar 29 00 26 29s536ms 1s136ms 01 10 11s205ms 1s120ms 02 46 51s833ms 1s126ms 03 17 20s45ms 1s179ms 04 39 43s911ms 1s125ms 05 36 40s509ms 1s125ms 06 5 5s595ms 1s119ms 07 17 19s15ms 1s118ms 08 7 7s772ms 1s110ms 09 7 7s894ms 1s127ms 10 9 9s919ms 1s102ms 11 7 7s870ms 1s124ms 12 5 31s456ms 6s291ms 13 8 8s987ms 1s123ms 14 15 16s686ms 1s112ms 15 6 6s666ms 1s111ms 16 13 14s748ms 1s134ms 17 6 6s739ms 1s123ms 18 19 21s397ms 1s126ms 19 13 14s695ms 1s130ms 20 13 14s756ms 1s135ms 21 7 7s951ms 1s135ms 22 15 17s63ms 1s137ms 23 13 14s742ms 1s134ms Mar 30 00 12 13s892ms 1s157ms 01 16 19s477ms 1s217ms 02 17 19s208ms 1s129ms 03 13 14s593ms 1s122ms 04 9 10s344ms 1s149ms 05 10 11s452ms 1s145ms 06 22 24s692ms 1s122ms 07 14 15s681ms 1s120ms 08 13 14s702ms 1s130ms 09 14 15s793ms 1s128ms 10 29 32s690ms 1s127ms 11 8 9s42ms 1s130ms 12 15 16s913ms 1s127ms 13 17 19s390ms 1s140ms 14 10 11s402ms 1s140ms 15 11 12s408ms 1s128ms 16 16 18s293ms 1s143ms 17 12 13s624ms 1s135ms 18 14 15s865ms 1s133ms 19 14 15s551ms 1s110ms 20 27 29s407ms 1s89ms 21 16 17s691ms 1s105ms 22 18 20s395ms 1s133ms 23 10 11s265ms 1s126ms [ User: pubeu - Total duration: 4m46s - Times executed: 254 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '2011917' or receptorTerm.id = '2011917' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-29 12:13:15 Duration: 12s140ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '2002974' or receptorTerm.id = '2002974' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-29 12:13:21 Duration: 10s828ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1966075' or receptorTerm.id = '1966075' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-29 12:13:12 Duration: 6s276ms Bind query: yes
3 530 36m15s 1s1ms 1m23s 4s104ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Mar 24 00 2 3s989ms 1s994ms 01 3 11s141ms 3s713ms 02 6 18s98ms 3s16ms 03 4 19s531ms 4s882ms 04 4 16s6ms 4s1ms 05 5 15s143ms 3s28ms 06 4 11s626ms 2s906ms 07 2 4s188ms 2s94ms 08 4 20s236ms 5s59ms 09 3 11s689ms 3s896ms 10 2 6s613ms 3s306ms 11 3 10s487ms 3s495ms 12 2 6s704ms 3s352ms 13 6 14s872ms 2s478ms 14 6 19s784ms 3s297ms 15 2 6s256ms 3s128ms 16 2 5s699ms 2s849ms 17 8 24s318ms 3s39ms 18 3 13s812ms 4s604ms 19 3 14s967ms 4s989ms 20 7 47s557ms 6s793ms 21 5 11s330ms 2s266ms 22 7 18s628ms 2s661ms 23 8 22s660ms 2s832ms Mar 25 00 4 11s256ms 2s814ms 01 3 8s21ms 2s673ms 02 4 9s401ms 2s350ms 03 3 12s28ms 4s9ms 04 10 44s84ms 4s408ms 05 4 13s557ms 3s389ms 06 9 1m17s 8s664ms 07 6 46s587ms 7s764ms 08 9 30s762ms 3s418ms 09 8 24s469ms 3s58ms 10 3 16s276ms 5s425ms 11 5 16s226ms 3s245ms 12 13 1m 4s649ms 13 7 35s974ms 5s139ms 14 4 17s683ms 4s420ms 15 3 7s206ms 2s402ms 16 6 14s48ms 2s341ms 17 9 30s690ms 3s410ms 18 7 14s196ms 2s28ms 19 5 14s89ms 2s817ms 20 6 38s634ms 6s439ms 21 2 4s36ms 2s18ms 22 5 27s403ms 5s480ms 23 4 16s826ms 4s206ms Mar 26 00 1 2s201ms 2s201ms 01 7 21s689ms 3s98ms 02 3 14s33ms 4s677ms 03 6 21s471ms 3s578ms 04 8 27s172ms 3s396ms 05 2 7s204ms 3s602ms 06 6 14s331ms 2s388ms 07 7 15s985ms 2s283ms 08 3 6s739ms 2s246ms 09 2 18s759ms 9s379ms 10 6 15s108ms 2s518ms 11 5 24s64ms 4s812ms 12 1 1s100ms 1s100ms 13 1 1s55ms 1s55ms 16 1 2s703ms 2s703ms 19 1 1s199ms 1s199ms 23 1 11s972ms 11s972ms Mar 27 03 2 5s26ms 2s513ms 04 2 3s960ms 1s980ms 05 1 2s18ms 2s18ms 06 1 5s18ms 5s18ms 07 1 2s166ms 2s166ms 08 1 1s379ms 1s379ms 10 2 5s361ms 2s680ms 11 2 5s421ms 2s710ms 12 1 4s318ms 4s318ms 13 4 25s875ms 6s468ms 14 4 13s828ms 3s457ms 16 2 5s509ms 2s754ms 17 1 2s318ms 2s318ms 19 1 7s233ms 7s233ms 20 2 4s453ms 2s226ms 21 2 4s327ms 2s163ms Mar 28 00 3 9s645ms 3s215ms 01 3 13s400ms 4s466ms 02 1 1s74ms 1s74ms 03 3 3s754ms 1s251ms 04 4 10s419ms 2s604ms 05 1 2s572ms 2s572ms 06 1 2s293ms 2s293ms 07 3 12s36ms 4s12ms 08 1 1s873ms 1s873ms 09 5 13s979ms 2s795ms 10 3 25s748ms 8s582ms 11 1 3s107ms 3s107ms 12 2 3s948ms 1s974ms 13 2 6s282ms 3s141ms 14 4 14s483ms 3s620ms 15 3 7s864ms 2s621ms 17 4 25s389ms 6s347ms 18 1 2s270ms 2s270ms 19 2 6s407ms 3s203ms 21 3 11s983ms 3s994ms 22 3 8s204ms 2s734ms 23 8 13s834ms 1s729ms Mar 29 00 3 6s182ms 2s60ms 01 4 14s155ms 3s538ms 02 1 5s478ms 5s478ms 03 3 5s349ms 1s783ms 04 1 1s227ms 1s227ms 05 4 17s180ms 4s295ms 06 1 6s632ms 6s632ms 07 2 7s800ms 3s900ms 09 6 37s287ms 6s214ms 10 1 2s233ms 2s233ms 11 2 9s936ms 4s968ms 12 11 3m 16s402ms 13 1 2s597ms 2s597ms 14 4 10s188ms 2s547ms 15 1 1s350ms 1s350ms 16 2 4s149ms 2s74ms 17 2 8s209ms 4s104ms 20 2 5s766ms 2s883ms 21 3 9s569ms 3s189ms 22 1 1s159ms 1s159ms 23 5 22s944ms 4s588ms Mar 30 00 11 56s989ms 5s180ms 01 22 2m23s 6s533ms 02 1 3s145ms 3s145ms 03 3 8s311ms 2s770ms 04 2 2s701ms 1s350ms 07 5 11s545ms 2s309ms 09 4 5s47ms 1s261ms 10 1 2s238ms 2s238ms 11 2 5s430ms 2s715ms 12 1 1s240ms 1s240ms 13 3 11s203ms 3s734ms 14 4 21s551ms 5s387ms 15 1 5s173ms 5s173ms 16 4 16s712ms 4s178ms 17 3 20s262ms 6s754ms 18 1 3s34ms 3s34ms 19 3 15s280ms 5s93ms 20 1 6s884ms 6s884ms 21 5 19s911ms 3s982ms 22 1 1s271ms 1s271ms 23 1 1s85ms 1s85ms [ User: pubeu - Total duration: 16m46s - Times executed: 253 ]
[ User: qaeu - Total duration: 1s790ms - Times executed: 1 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2047455') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-29 12:13:37 Duration: 1m23s Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2047310') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-29 12:12:50 Duration: 32s362ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2059246') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-29 12:12:42 Duration: 29s867ms Bind query: yes
4 262 18m13s 3s802ms 18s137ms 4s171ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Mar 24 00 1 5s357ms 5s357ms 01 2 7s876ms 3s938ms 03 4 17s21ms 4s255ms 05 1 3s984ms 3s984ms 06 1 3s994ms 3s994ms 09 3 12s82ms 4s27ms 10 3 13s289ms 4s429ms 11 4 15s861ms 3s965ms 13 1 3s977ms 3s977ms 14 1 3s997ms 3s997ms 16 1 4s30ms 4s30ms 17 1 4s11ms 4s11ms 19 1 4s85ms 4s85ms 20 6 23s729ms 3s954ms 23 1 4s31ms 4s31ms Mar 25 01 2 8s91ms 4s45ms 02 1 3s943ms 3s943ms 03 2 8s180ms 4s90ms 04 2 8s138ms 4s69ms 05 2 8s84ms 4s42ms 06 4 17s7ms 4s251ms 07 5 20s556ms 4s111ms 08 2 7s972ms 3s986ms 09 2 7s885ms 3s942ms 10 3 12s246ms 4s82ms 11 4 16s136ms 4s34ms 13 1 4s441ms 4s441ms 15 2 8s91ms 4s45ms 16 1 4s16ms 4s16ms 18 1 4s59ms 4s59ms 19 1 3s978ms 3s978ms 21 1 3s914ms 3s914ms 23 2 7s977ms 3s988ms Mar 26 03 3 12s247ms 4s82ms 04 4 16s246ms 4s61ms 05 2 7s976ms 3s988ms 06 3 12s126ms 4s42ms 07 4 16s258ms 4s64ms 09 3 11s958ms 3s986ms 11 5 20s336ms 4s67ms 12 4 16s93ms 4s23ms 13 5 19s786ms 3s957ms 14 2 7s894ms 3s947ms 16 1 4s141ms 4s141ms 19 1 4s52ms 4s52ms 22 1 3s983ms 3s983ms Mar 27 01 7 28s464ms 4s66ms 03 2 7s965ms 3s982ms 04 3 12s180ms 4s60ms 05 1 3s957ms 3s957ms 06 8 41s892ms 5s236ms 08 2 7s962ms 3s981ms 09 2 8s284ms 4s142ms 10 1 4s 4s 11 5 20s15ms 4s3ms 14 4 16s16ms 4s4ms 15 1 4s282ms 4s282ms 16 3 12s614ms 4s204ms 17 2 8s81ms 4s40ms 18 5 21s194ms 4s238ms 21 1 4s278ms 4s278ms 22 2 8s107ms 4s53ms 23 4 16s420ms 4s105ms Mar 28 00 4 16s148ms 4s37ms 01 3 12s266ms 4s88ms 02 1 4s374ms 4s374ms 04 1 4s132ms 4s132ms 05 1 4s627ms 4s627ms 06 1 4s30ms 4s30ms 07 3 12s42ms 4s14ms 08 6 23s814ms 3s969ms 09 2 8s251ms 4s125ms 10 2 7s934ms 3s967ms 11 4 16s241ms 4s60ms 12 3 12s589ms 4s196ms 13 2 8s146ms 4s73ms 15 3 12s250ms 4s83ms 18 1 4s35ms 4s35ms 19 5 20s88ms 4s17ms 21 9 36s478ms 4s53ms 23 9 36s366ms 4s40ms Mar 29 00 1 4s188ms 4s188ms 01 2 8s27ms 4s13ms 02 3 12s575ms 4s191ms 03 2 8s265ms 4s132ms 05 4 17s471ms 4s367ms 06 1 3s994ms 3s994ms 09 2 7s911ms 3s955ms 12 2 7s952ms 3s976ms 16 1 4s278ms 4s278ms 20 1 4s44ms 4s44ms 21 1 4s158ms 4s158ms Mar 30 01 1 4s505ms 4s505ms 03 1 4s64ms 4s64ms 05 1 4s17ms 4s17ms 06 1 4s99ms 4s99ms 07 1 4s161ms 4s161ms 09 2 8s687ms 4s343ms 11 1 4s105ms 4s105ms 13 2 8s402ms 4s201ms 15 1 18s137ms 18s137ms 17 1 4s247ms 4s247ms 19 1 4s131ms 4s131ms 20 1 4s235ms 4s235ms 21 4 16s597ms 4s149ms 22 4 16s64ms 4s16ms [ User: pubeu - Total duration: 8m59s - Times executed: 129 ]
[ User: qaeu - Total duration: 4s141ms - Times executed: 1 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1381425') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1381425') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-03-30 15:45:03 Duration: 18s137ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1418309') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1418309') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-03-27 06:31:48 Duration: 13s817ms Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1309399') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1309399') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-03-24 00:52:19 Duration: 5s357ms Bind query: yes
5 209 4m28s 1s228ms 4s639ms 1s285ms select coalesce(d.abbr_display, d.nm_display) nm # ?, d.description # ?, coalesce(d.abbr, d.nm) anchor # ?, get_homepage_url (d.id) url # ? from db d # ? where d.id in (# ? select l.db_id # ? from db_link l # ? where l.type_cd = ? # ? and l.object_type_id = ?) # ? order by ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Mar 24 02 3 3s740ms 1s246ms 03 4 4s988ms 1s247ms 05 5 6s255ms 1s251ms 21 1 1s252ms 1s252ms Mar 25 04 1 1s266ms 1s266ms 05 3 3s778ms 1s259ms 09 1 1s262ms 1s262ms 11 2 2s505ms 1s252ms 12 1 1s246ms 1s246ms 15 3 3s761ms 1s253ms 16 2 2s507ms 1s253ms 17 5 6s232ms 1s246ms 18 6 7s518ms 1s253ms 19 4 5s1ms 1s250ms 20 3 3s738ms 1s246ms 21 7 8s867ms 1s266ms 22 6 7s538ms 1s256ms Mar 26 00 1 1s251ms 1s251ms 01 2 2s513ms 1s256ms 02 1 1s273ms 1s273ms 03 1 1s248ms 1s248ms 04 1 1s263ms 1s263ms 05 2 2s511ms 1s255ms 06 1 1s246ms 1s246ms 10 1 1s252ms 1s252ms 11 1 1s243ms 1s243ms 13 1 1s251ms 1s251ms 14 2 2s486ms 1s243ms 15 1 1s247ms 1s247ms 16 1 1s249ms 1s249ms 17 1 1s242ms 1s242ms 19 1 1s244ms 1s244ms 20 1 1s237ms 1s237ms 21 5 6s267ms 1s253ms 22 1 1s243ms 1s243ms Mar 27 00 1 1s243ms 1s243ms 01 2 2s496ms 1s248ms 02 1 1s244ms 1s244ms 03 3 3s738ms 1s246ms 04 3 3s735ms 1s245ms 05 3 3s776ms 1s258ms 07 2 2s508ms 1s254ms 08 1 1s239ms 1s239ms 11 2 2s496ms 1s248ms 12 2 2s514ms 1s257ms 13 1 1s284ms 1s284ms 14 2 2s495ms 1s247ms 16 1 1s286ms 1s286ms 17 1 1s245ms 1s245ms 18 1 1s250ms 1s250ms 20 1 1s367ms 1s367ms 21 3 3s855ms 1s285ms 22 1 1s321ms 1s321ms Mar 28 01 2 3s124ms 1s562ms 02 1 1s259ms 1s259ms 05 4 5s784ms 1s446ms 06 1 1s246ms 1s246ms 08 1 1s246ms 1s246ms 12 1 1s329ms 1s329ms 16 2 2s511ms 1s255ms 17 1 1s228ms 1s228ms 21 1 1s241ms 1s241ms 22 2 2s465ms 1s232ms Mar 29 00 2 2s472ms 1s236ms 05 2 2s644ms 1s322ms 06 1 1s256ms 1s256ms 08 1 1s233ms 1s233ms 10 1 1s230ms 1s230ms 12 1 4s639ms 4s639ms 16 1 1s259ms 1s259ms 17 1 1s259ms 1s259ms 19 2 2s597ms 1s298ms 20 1 1s268ms 1s268ms Mar 30 00 27 34s521ms 1s278ms 01 16 20s570ms 1s285ms 04 1 1s248ms 1s248ms 05 2 2s532ms 1s266ms 07 1 1s263ms 1s263ms 09 2 2s536ms 1s268ms 10 1 1s262ms 1s262ms 11 2 2s520ms 1s260ms 12 3 3s861ms 1s287ms 13 1 1s267ms 1s267ms 14 1 1s278ms 1s278ms 15 3 3s784ms 1s261ms 19 2 2s524ms 1s262ms 20 4 5s8ms 1s252ms 21 1 1s276ms 1s276ms [ User: pubeu - Total duration: 1m37s - Times executed: 74 ]
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-03-29 12:12:07 Duration: 4s639ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-03-28 05:38:48 Duration: 1s833ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-03-28 01:22:32 Duration: 1s810ms Database: ctdprd51 User: pubeu Bind query: yes
6 175 46m12s 2s480ms 33m29s 15s844ms select g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(r.acc_txt, ? order by r.acc_txt) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id group by g.nm, g.acc_txt, d.nm, d.acc_db_cd || ? || d.acc_txt, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by g.nm, d.nm;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Mar 28 13 175 46m12s 15s844ms [ User: qaeu - Total duration: 33m29s - Times executed: 1 ]
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-03-28 13:03:28 Duration: 33m29s Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-03-28 13:22:06 Duration: 5s848ms Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-03-28 13:28:10 Duration: 5s667ms Bind query: yes
7 173 3m52s 1s155ms 13s754ms 1s345ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Mar 24 00 1 1s231ms 1s231ms 03 1 1s322ms 1s322ms 04 1 1s306ms 1s306ms 05 4 5s184ms 1s296ms 07 1 1s230ms 1s230ms 08 1 1s307ms 1s307ms 10 2 2s930ms 1s465ms 11 1 1s251ms 1s251ms 12 1 1s195ms 1s195ms 17 1 1s217ms 1s217ms 23 1 1s238ms 1s238ms Mar 25 01 1 1s286ms 1s286ms 05 3 3s858ms 1s286ms 07 1 1s245ms 1s245ms 09 2 2s469ms 1s234ms 10 1 1s198ms 1s198ms 11 1 1s170ms 1s170ms 12 1 1s249ms 1s249ms 14 1 1s164ms 1s164ms 15 1 1s284ms 1s284ms 16 1 1s175ms 1s175ms 17 1 1s211ms 1s211ms 19 6 7s229ms 1s204ms 20 1 1s211ms 1s211ms 21 2 2s635ms 1s317ms 22 1 1s252ms 1s252ms Mar 26 00 2 2s398ms 1s199ms 02 3 3s650ms 1s216ms 04 1 1s208ms 1s208ms 05 5 6s305ms 1s261ms 07 4 5s6ms 1s251ms 08 1 1s229ms 1s229ms 09 1 1s567ms 1s567ms 10 2 2s403ms 1s201ms 11 1 1s238ms 1s238ms 12 1 1s181ms 1s181ms 15 1 1s155ms 1s155ms 19 1 1s239ms 1s239ms Mar 27 00 1 1s257ms 1s257ms 04 1 1s185ms 1s185ms 05 3 4s160ms 1s386ms 06 1 1s212ms 1s212ms 10 1 1s242ms 1s242ms 11 1 1s277ms 1s277ms 12 1 1s286ms 1s286ms 13 1 1s201ms 1s201ms 14 1 1s278ms 1s278ms 15 2 2s447ms 1s223ms 16 1 1s250ms 1s250ms 18 2 2s532ms 1s266ms 19 1 1s292ms 1s292ms 20 1 1s247ms 1s247ms 23 2 2s460ms 1s230ms Mar 28 00 1 1s194ms 1s194ms 03 1 1s247ms 1s247ms 05 2 2s688ms 1s344ms 06 2 2s451ms 1s225ms 08 1 1s269ms 1s269ms 10 1 1s200ms 1s200ms 11 1 1s195ms 1s195ms 12 1 1s334ms 1s334ms 15 2 2s433ms 1s216ms 21 1 1s223ms 1s223ms Mar 29 00 2 2s556ms 1s278ms 01 2 2s487ms 1s243ms 02 1 1s221ms 1s221ms 03 2 2s628ms 1s314ms 04 2 2s515ms 1s257ms 05 5 6s386ms 1s277ms 07 2 2s466ms 1s233ms 08 1 1s201ms 1s201ms 09 5 6s190ms 1s238ms 10 3 3s681ms 1s227ms 12 1 13s754ms 13s754ms 13 2 3s179ms 1s589ms 15 1 1s217ms 1s217ms 16 1 1s345ms 1s345ms 18 1 1s204ms 1s204ms 19 4 4s891ms 1s222ms 21 2 2s785ms 1s392ms 22 1 1s324ms 1s324ms 23 5 6s958ms 1s391ms Mar 30 00 1 1s347ms 1s347ms 01 9 12s640ms 1s404ms 02 2 2s481ms 1s240ms 03 2 2s531ms 1s265ms 05 2 2s717ms 1s358ms 06 1 1s196ms 1s196ms 07 2 2s423ms 1s211ms 09 8 10s312ms 1s289ms 11 2 2s400ms 1s200ms 12 2 2s468ms 1s234ms 14 1 1s241ms 1s241ms 15 1 1s318ms 1s318ms 22 1 1s257ms 1s257ms 23 1 1s260ms 1s260ms [ User: pubeu - Total duration: 1m29s - Times executed: 71 ]
[ User: qaeu - Total duration: 2s549ms - Times executed: 2 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2050058') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2050058') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-29 12:12:42 Duration: 13s754ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2055833') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2055833') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-30 01:01:50 Duration: 2s419ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2051315') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2051315') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-29 23:09:32 Duration: 1s700ms Bind query: yes
8 170 8m52s 1s2ms 32s382ms 3s132ms select e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, ( select string_agg(distinct stressorterm.nm || ? || ( select cd from object_type where id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?)) as stressoragents, ( select string_agg(distinct coalesce(receptorterm.nm, ?) || ? || coalesce(( select cd from object_type where id = receptorterm.object_type_id), ?) || ? || coalesce(receptorterm.nm_html, ?) || ? || coalesce(receptorterm.acc_txt, ?) || ? || coalesce(receptorterm.acc_db_cd, ?) || ? || receptor.description, ?)) as receptors, ( select string_agg(distinct country.nm, ?)) as studycountries, ( select string_agg(distinct location.locality_txt, ?)) as localities, ( select string_agg(distinct event.medium_nm || ? || coalesce(event.medium_term_acc_txt, ?), ?)) as assaymediums, ( select string_agg(distinct exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?)) as assayedmarkers, ( select string_agg(distinct diseaseterm.nm || ? || ( select cd from object_type where id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?)) as diseases, ( select string_agg(distinct phenotypeterm.nm || ? || ( select cd from object_type where id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?)) as phenotypes, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, re.author_summary summary, count(*) over () fullrowcount from exposure e inner join reference r on e.reference_id = r.id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join term receptorterm on receptor.term_id = receptorterm.id left outer join exp_event event on e.exp_event_id = event.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join exp_event_location location on e.exp_event_id = location.exp_event_id left outer join country on location.country_id = country.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id inner join reference_exp re on e.reference_id = re.reference_id left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id where e.reference_id = any (array ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like ?) and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressoragents limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Mar 24 02 1 1s232ms 1s232ms 03 1 1s709ms 1s709ms 04 3 4s816ms 1s605ms 13 1 3s509ms 3s509ms 15 1 1s314ms 1s314ms 16 1 3s484ms 3s484ms 17 1 3s498ms 3s498ms 23 1 4s861ms 4s861ms Mar 25 02 3 7s83ms 2s361ms 05 1 1s625ms 1s625ms 06 2 2s154ms 1s77ms 07 1 3s540ms 3s540ms 10 1 1s8ms 1s8ms 11 1 1s235ms 1s235ms 12 1 2s111ms 2s111ms 14 2 7s50ms 3s525ms 16 1 1s621ms 1s621ms 17 2 2s413ms 1s206ms 18 1 4s800ms 4s800ms 19 1 4s950ms 4s950ms 21 1 2s185ms 2s185ms 22 1 3s501ms 3s501ms Mar 26 00 2 6s228ms 3s114ms 03 1 1s213ms 1s213ms 04 1 1s224ms 1s224ms 06 1 4s907ms 4s907ms 07 4 8s619ms 2s154ms 08 1 3s453ms 3s453ms 12 2 2s440ms 1s220ms 14 1 1s2ms 1s2ms 22 1 2s707ms 2s707ms Mar 27 08 1 1s103ms 1s103ms 12 1 3s538ms 3s538ms 13 1 1s579ms 1s579ms 15 1 2s718ms 2s718ms Mar 28 07 2 4s874ms 2s437ms 08 1 1s100ms 1s100ms 11 2 6s114ms 3s57ms 12 1 2s760ms 2s760ms 13 1 3s587ms 3s587ms 16 1 2s245ms 2s245ms 20 1 2s683ms 2s683ms 22 3 9s482ms 3s160ms 23 4 14s464ms 3s616ms Mar 29 00 5 9s35ms 1s807ms 01 1 3s533ms 3s533ms 02 2 4s742ms 2s371ms 03 1 3s574ms 3s574ms 04 2 6s499ms 3s249ms 05 3 9s440ms 3s146ms 06 2 8s280ms 4s140ms 07 1 3s614ms 3s614ms 08 2 2s419ms 1s209ms 10 1 2s113ms 2s113ms 12 23 2m27s 6s395ms 13 2 4s589ms 2s294ms 14 3 7s186ms 2s395ms 16 5 12s817ms 2s563ms 20 5 15s851ms 3s170ms 21 2 5s955ms 2s977ms 22 2 2s428ms 1s214ms Mar 30 00 5 17s342ms 3s468ms 01 12 36s69ms 3s5ms 02 3 11s112ms 3s704ms 03 1 1s4ms 1s4ms 04 2 8s177ms 4s88ms 06 1 2s221ms 2s221ms 08 1 1s14ms 1s14ms 10 1 3s494ms 3s494ms 11 2 4s10ms 2s5ms 12 2 8s457ms 4s228ms 13 1 1s200ms 1s200ms 14 4 14s607ms 3s651ms 15 1 5s6ms 5s6ms 16 4 4s861ms 1s215ms 18 3 3s70ms 1s23ms 19 1 2s702ms 2s702ms 22 1 1s291ms 1s291ms [ User: pubeu - Total duration: 2m45s - Times executed: 57 ]
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1379157') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1379157') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-03-29 12:12:46 Duration: 32s382ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1408019') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1408019') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-03-29 12:12:40 Duration: 27s407ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1260577') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1260577') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-03-29 12:12:23 Duration: 12s34ms Database: ctdprd51 User: pubeu Bind query: yes
9 151 3m43s 1s354ms 8s524ms 1s480ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Mar 24 02 3 4s292ms 1s430ms 04 1 1s396ms 1s396ms 05 5 7s84ms 1s416ms 08 1 1s430ms 1s430ms 12 1 1s435ms 1s435ms 13 1 1s397ms 1s397ms 14 1 1s403ms 1s403ms 15 1 1s425ms 1s425ms 19 1 1s409ms 1s409ms 20 1 1s525ms 1s525ms 21 5 6s965ms 1s393ms Mar 25 04 1 1s392ms 1s392ms 05 2 2s838ms 1s419ms 10 1 1s420ms 1s420ms 11 2 2s808ms 1s404ms 12 1 1s403ms 1s403ms 14 1 1s403ms 1s403ms 16 1 1s378ms 1s378ms 18 1 1s396ms 1s396ms 22 2 2s770ms 1s385ms 23 1 1s407ms 1s407ms Mar 26 01 1 1s401ms 1s401ms 03 8 11s501ms 1s437ms 05 5 7s72ms 1s414ms 06 3 4s198ms 1s399ms 10 1 1s401ms 1s401ms 12 2 2s781ms 1s390ms 13 1 1s379ms 1s379ms 14 14 19s408ms 1s386ms 19 2 2s819ms 1s409ms 22 1 1s432ms 1s432ms 23 1 1s380ms 1s380ms Mar 27 02 1 1s397ms 1s397ms 04 1 1s382ms 1s382ms 05 2 2s756ms 1s378ms 07 1 1s391ms 1s391ms 10 2 2s838ms 1s419ms 15 2 2s976ms 1s488ms 16 1 1s449ms 1s449ms 17 2 2s836ms 1s418ms 21 1 1s515ms 1s515ms 23 1 1s718ms 1s718ms Mar 28 01 1 1s469ms 1s469ms 02 9 13s285ms 1s476ms 03 7 9s846ms 1s406ms 05 3 4s543ms 1s514ms 06 1 1s451ms 1s451ms 08 2 2s805ms 1s402ms 12 1 1s555ms 1s555ms 13 1 1s405ms 1s405ms 14 1 1s428ms 1s428ms 15 1 1s400ms 1s400ms 16 1 1s377ms 1s377ms 21 1 1s406ms 1s406ms Mar 29 02 2 2s791ms 1s395ms 03 1 1s392ms 1s392ms 04 1 1s516ms 1s516ms 05 3 4s241ms 1s413ms 08 1 1s388ms 1s388ms 11 1 1s392ms 1s392ms 12 1 8s524ms 8s524ms 16 1 1s467ms 1s467ms 18 2 2s959ms 1s479ms 22 1 1s498ms 1s498ms Mar 30 00 3 4s477ms 1s492ms 01 4 6s102ms 1s525ms 02 1 1s490ms 1s490ms 03 1 1s424ms 1s424ms 05 2 2s983ms 1s491ms 08 1 1s451ms 1s451ms 09 2 2s928ms 1s464ms 10 3 4s414ms 1s471ms 12 3 4s498ms 1s499ms 22 1 1s555ms 1s555ms [ User: pubeu - Total duration: 1m41s - Times executed: 66 ]
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-03-29 12:12:13 Duration: 8s524ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-03-27 23:36:56 Duration: 1s718ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-03-28 05:42:09 Duration: 1s654ms Bind query: yes
10 139 15m11s 1s2ms 34s553ms 6s559ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Mar 24 01 1 5s226ms 5s226ms 05 1 5s274ms 5s274ms 08 1 1s37ms 1s37ms 10 1 5s114ms 5s114ms 11 1 1s80ms 1s80ms 17 1 1s9ms 1s9ms 20 1 5s244ms 5s244ms 23 1 1s39ms 1s39ms Mar 25 03 1 5s137ms 5s137ms 05 1 1s2ms 1s2ms 08 1 1s31ms 1s31ms 09 1 1s29ms 1s29ms 10 1 5s265ms 5s265ms 11 1 5s419ms 5s419ms 13 1 5s817ms 5s817ms 19 3 11s401ms 3s800ms Mar 26 00 1 1s40ms 1s40ms 04 3 16s21ms 5s340ms 07 1 1s12ms 1s12ms 08 2 10s403ms 5s201ms 09 4 20s879ms 5s219ms 11 1 5s228ms 5s228ms 18 1 5s125ms 5s125ms 19 1 5s328ms 5s328ms 23 1 5s162ms 5s162ms Mar 27 00 1 5s557ms 5s557ms 02 2 6s285ms 3s142ms 03 1 5s303ms 5s303ms 09 1 1s14ms 1s14ms 10 2 10s394ms 5s197ms 16 1 5s269ms 5s269ms 20 2 10s864ms 5s432ms 22 1 5s956ms 5s956ms 23 1 6s50ms 6s50ms Mar 28 02 1 6s328ms 6s328ms 07 1 5s369ms 5s369ms 08 1 5s171ms 5s171ms 09 1 5s69ms 5s69ms 12 5 9s908ms 1s981ms 15 1 5s762ms 5s762ms 19 1 4s949ms 4s949ms 21 1 5s182ms 5s182ms 23 1 5s71ms 5s71ms Mar 29 02 8 34s352ms 4s294ms 04 8 33s738ms 4s217ms 05 2 6s121ms 3s60ms 09 1 5s180ms 5s180ms 10 2 10s140ms 5s70ms 11 2 2s23ms 1s11ms 12 15 6m52s 27s517ms 13 4 20s154ms 5s38ms 14 2 10s293ms 5s146ms 16 3 3s419ms 1s139ms 22 1 5s852ms 5s852ms Mar 30 00 1 5s724ms 5s724ms 01 3 18s505ms 6s168ms 02 4 23s526ms 5s881ms 03 2 6s998ms 3s499ms 04 2 2s292ms 1s146ms 05 7 12s699ms 1s814ms 06 1 5s643ms 5s643ms 09 1 5s997ms 5s997ms 11 1 1s173ms 1s173ms 12 1 1s144ms 1s144ms 13 2 2s119ms 1s59ms 15 1 5s739ms 5s739ms 18 1 1s19ms 1s19ms 19 2 11s323ms 5s661ms 20 3 16s679ms 5s559ms 21 1 6s239ms 6s239ms [ User: pubeu - Total duration: 2m50s - Times executed: 39 ]
[ User: qaeu - Total duration: 2s323ms - Times executed: 2 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1283908' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-03-29 12:13:10 Duration: 34s553ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1369583' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-03-29 12:13:27 Duration: 33s837ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1325581' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-03-29 12:12:47 Duration: 33s500ms Bind query: yes
11 116 13m39s 1s62ms 37s203ms 7s66ms select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Mar 24 03 3 13s993ms 4s664ms 04 6 28s7ms 4s667ms 05 3 14s80ms 4s693ms 06 6 28s166ms 4s694ms 22 2 2s350ms 1s175ms Mar 25 08 2 2s161ms 1s80ms Mar 26 02 1 1s62ms 1s62ms 13 3 14s108ms 4s702ms 15 8 37s527ms 4s690ms 16 9 42s44ms 4s671ms 17 6 28s13ms 4s668ms 20 6 28s141ms 4s690ms 21 3 14s30ms 4s676ms Mar 27 06 10 28s314ms 2s831ms Mar 28 15 2 9s371ms 4s685ms Mar 29 12 17 6m30s 22s982ms Mar 30 12 2 9s472ms 4s736ms 13 4 18s989ms 4s747ms 14 3 14s158ms 4s719ms 15 8 37s842ms 4s730ms 16 3 14s275ms 4s758ms 18 9 42s886ms 4s765ms [ User: pubeu - Total duration: 2m21s - Times executed: 35 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'TP73') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'TP73') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TP73')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'TP73')) ii GROUP BY ii.cd;
Date: 2024-03-29 12:14:05 Duration: 37s203ms Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CML33') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CML33') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CML33')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CML33')) ii GROUP BY ii.cd;
Date: 2024-03-29 12:14:09 Duration: 36s717ms Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FPP') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FPP') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FPP')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FPP')) ii GROUP BY ii.cd;
Date: 2024-03-29 12:14:05 Duration: 35s703ms Bind query: yes
12 114 14m58s 1s92ms 41s117ms 7s879ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Mar 24 01 1 12s685ms 12s685ms 02 2 3s163ms 1s581ms 11 2 2s571ms 1s285ms 14 1 12s703ms 12s703ms 17 1 1s612ms 1s612ms 20 1 38s988ms 38s988ms 21 1 12s673ms 12s673ms Mar 25 02 1 1s324ms 1s324ms 04 3 43s4ms 14s334ms 05 1 1s374ms 1s374ms 06 1 40s340ms 40s340ms 07 1 41s117ms 41s117ms 21 1 12s705ms 12s705ms 23 1 1s583ms 1s583ms Mar 26 01 1 12s811ms 12s811ms 04 1 1s270ms 1s270ms 17 1 1s547ms 1s547ms Mar 27 02 4 4s495ms 1s123ms 03 1 1s127ms 1s127ms 04 1 2s189ms 2s189ms 05 5 9s616ms 1s923ms 09 2 3s937ms 1s968ms 10 1 7s454ms 7s454ms 21 2 3s205ms 1s602ms Mar 28 02 1 2s327ms 2s327ms 03 8 17s255ms 2s156ms 04 5 2m25s 29s156ms 05 3 1m25s 28s552ms 06 1 26s504ms 26s504ms 09 4 4s764ms 1s191ms 23 19 1m37s 5s113ms Mar 29 00 4 21s74ms 5s268ms 01 2 12s345ms 6s172ms 02 6 8s368ms 1s394ms 07 3 8s927ms 2s975ms 08 2 5s923ms 2s961ms 19 2 38s855ms 19s427ms 20 4 43s104ms 10s776ms 21 2 39s752ms 19s876ms Mar 30 01 2 5s931ms 2s965ms 02 4 11s995ms 2s998ms 11 2 19s190ms 9s595ms 12 3 29s794ms 9s931ms [ User: pubeu - Total duration: 8m18s - Times executed: 63 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-03-25 07:06:28 Duration: 41s117ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-03-25 06:56:52 Duration: 40s340ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-03-25 04:14:27 Duration: 39s789ms Bind query: yes
13 100 2m35s 1s145ms 13s781ms 1s552ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Mar 24 03 1 1s191ms 1s191ms 04 1 1s168ms 1s168ms 05 2 2s668ms 1s334ms 18 1 1s250ms 1s250ms Mar 25 03 1 1s248ms 1s248ms 05 1 1s341ms 1s341ms 12 1 1s196ms 1s196ms 16 2 2s357ms 1s178ms Mar 26 01 1 1s214ms 1s214ms 03 1 1s183ms 1s183ms 04 3 3s601ms 1s200ms 05 2 2s624ms 1s312ms 13 1 1s185ms 1s185ms 15 1 1s197ms 1s197ms 23 1 1s152ms 1s152ms Mar 27 05 2 2s631ms 1s315ms 08 1 1s199ms 1s199ms 09 1 1s186ms 1s186ms 14 2 2s547ms 1s273ms 15 1 1s212ms 1s212ms 23 2 2s490ms 1s245ms Mar 28 05 2 2s679ms 1s339ms 06 1 1s215ms 1s215ms 07 1 1s233ms 1s233ms 08 1 1s228ms 1s228ms 10 1 1s216ms 1s216ms 12 1 1s303ms 1s303ms 14 2 2s424ms 1s212ms 16 1 1s195ms 1s195ms 20 1 1s193ms 1s193ms 23 1 1s774ms 1s774ms Mar 29 00 2 2s465ms 1s232ms 03 2 2s498ms 1s249ms 04 6 7s757ms 1s292ms 05 2 2s608ms 1s304ms 06 1 1s290ms 1s290ms 07 1 1s176ms 1s176ms 10 1 1s208ms 1s208ms 11 3 3s693ms 1s231ms 12 3 34s176ms 11s392ms 14 2 2s439ms 1s219ms 16 1 1s332ms 1s332ms 17 1 1s227ms 1s227ms 19 1 1s201ms 1s201ms 22 6 7s458ms 1s243ms Mar 30 00 1 1s187ms 1s187ms 01 2 2s438ms 1s219ms 03 2 2s410ms 1s205ms 04 1 1s223ms 1s223ms 05 4 5s190ms 1s297ms 07 2 2s463ms 1s231ms 08 8 10s44ms 1s255ms 09 1 1s231ms 1s231ms 17 1 1s213ms 1s213ms 21 3 3s521ms 1s173ms 22 2 2s475ms 1s237ms [ User: pubeu - Total duration: 31s275ms - Times executed: 25 ]
[ User: qaeu - Total duration: 2s610ms - Times executed: 2 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1200037') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1200037') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-29 12:13:24 Duration: 13s781ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1229908') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1229908') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-29 12:12:30 Duration: 13s359ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1201816') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1201816') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-29 12:13:29 Duration: 7s35ms Bind query: yes
14 99 2m19s 1s8ms 4s373ms 1s413ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, count(gcr.ixn_id) ixncount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join term g on gcr.gene_id = g.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.id, g.acc_txt, g.acc_db_cd, g.nm_sort order by count(gcr.ixn_id) desc, g.nm_sort limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Mar 29 12 99 2m19s 1s413ms [ User: pubeu - Total duration: 7s296ms - Times executed: 3 ]
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SELECT /* ChemGenesDAO */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, COUNT(gcr.ixn_id) ixnCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN term g ON gcr.gene_id = g.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1258622') GROUP BY g.nm, g.id, g.acc_txt, g.acc_db_cd, g.nm_sort ORDER BY COUNT(gcr.ixn_id) DESC, g.nm_sort LIMIT 50;
Date: 2024-03-29 12:12:33 Duration: 4s373ms Bind query: yes
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SELECT /* ChemGenesDAO */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, COUNT(gcr.ixn_id) ixnCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN term g ON gcr.gene_id = g.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1249416') GROUP BY g.nm, g.id, g.acc_txt, g.acc_db_cd, g.nm_sort ORDER BY COUNT(gcr.ixn_id) DESC, g.nm_sort LIMIT 50;
Date: 2024-03-29 12:12:35 Duration: 3s614ms Bind query: yes
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SELECT /* ChemGenesDAO */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, COUNT(gcr.ixn_id) ixnCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN term g ON gcr.gene_id = g.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1408019') GROUP BY g.nm, g.id, g.acc_txt, g.acc_db_cd, g.nm_sort ORDER BY COUNT(gcr.ixn_id) DESC, g.nm_sort LIMIT 50;
Date: 2024-03-29 12:12:15 Duration: 3s468ms Database: ctdprd51 User: pubeu Bind query: yes
15 97 5m16s 1s41ms 11s824ms 3s262ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where associatedterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Mar 24 00 1 5s959ms 5s959ms 05 2 11s948ms 5s974ms 12 1 5s936ms 5s936ms 19 1 1s874ms 1s874ms 21 1 5s997ms 5s997ms 23 1 5s936ms 5s936ms Mar 25 00 2 4s666ms 2s333ms 01 1 1s998ms 1s998ms 03 2 8s763ms 4s381ms 06 1 5s937ms 5s937ms 07 1 1s855ms 1s855ms 12 1 6s60ms 6s60ms 15 2 3s806ms 1s903ms 17 2 6s18ms 3s9ms 18 1 1s999ms 1s999ms 22 1 1s819ms 1s819ms Mar 26 07 1 1s717ms 1s717ms 09 1 3s241ms 3s241ms 10 1 1s725ms 1s725ms 17 3 4s21ms 1s340ms 21 2 6s453ms 3s226ms Mar 27 14 1 1s201ms 1s201ms 15 2 8s676ms 4s338ms 19 2 5s389ms 2s694ms Mar 28 00 2 4s351ms 2s175ms 04 1 1s962ms 1s962ms 07 1 3s281ms 3s281ms 08 2 3s700ms 1s850ms 12 1 2s70ms 2s70ms 13 1 6s449ms 6s449ms 15 1 2s18ms 2s18ms 16 1 5s936ms 5s936ms 18 1 5s987ms 5s987ms 20 1 1s821ms 1s821ms 22 1 2s18ms 2s18ms 23 1 1s662ms 1s662ms Mar 29 00 1 3s325ms 3s325ms 08 1 1s760ms 1s760ms 09 1 3s850ms 3s850ms 11 1 1s823ms 1s823ms 12 16 1m4s 4s36ms 15 1 5s965ms 5s965ms 18 3 8s629ms 2s876ms 23 1 1s337ms 1s337ms Mar 30 00 5 14s333ms 2s866ms 01 8 27s445ms 3s430ms 02 1 1s965ms 1s965ms 08 1 2s843ms 2s843ms 10 1 1s878ms 1s878ms 12 4 12s191ms 3s47ms 13 1 6s26ms 6s26ms 15 3 4s209ms 1s403ms [ User: pubeu - Total duration: 1m54s - Times executed: 35 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1258622'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-29 12:12:41 Duration: 11s824ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1408019'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-29 12:12:21 Duration: 11s337ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1416799'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-29 12:12:21 Duration: 9s636ms Bind query: yes
16 82 13m44s 1s2ms 1m33s 10s57ms select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Mar 25 01 2 2s331ms 1s165ms 03 1 1s535ms 1s535ms 04 1 1s840ms 1s840ms 06 1 6s187ms 6s187ms 09 1 17s958ms 17s958ms 15 1 6s524ms 6s524ms 17 1 1s730ms 1s730ms 18 1 8s242ms 8s242ms 20 1 1s2ms 1s2ms Mar 26 00 1 17s857ms 17s857ms 05 1 1s217ms 1s217ms 07 1 6s628ms 6s628ms 23 3 1m1s 20s437ms Mar 27 21 1 9s599ms 9s599ms 22 1 1s835ms 1s835ms Mar 28 00 1 2s934ms 2s934ms 01 1 8s751ms 8s751ms 03 1 6s484ms 6s484ms 13 2 8s317ms 4s158ms 16 1 19s195ms 19s195ms 20 1 1s51ms 1s51ms Mar 29 00 2 6s792ms 3s396ms 02 8 1m 7s522ms 03 6 51s840ms 8s640ms 04 2 4s643ms 2s321ms 08 2 2s496ms 1s248ms 12 10 6m20s 38s81ms 16 2 9s733ms 4s866ms 19 1 7s294ms 7s294ms 21 2 2s175ms 1s87ms 22 2 2s618ms 1s309ms 23 2 3s910ms 1s955ms Mar 30 00 2 12s577ms 6s288ms 01 8 1m7s 8s449ms 03 1 2s370ms 2s370ms 05 1 1s60ms 1s60ms 09 1 1s61ms 1s61ms 15 1 1s292ms 1s292ms 17 2 3s971ms 1s985ms 19 1 8s483ms 8s483ms 21 1 1s288ms 1s288ms [ User: pubeu - Total duration: 6m59s - Times executed: 30 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1204159') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-03-29 12:13:37 Duration: 1m33s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1246113') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-03-29 12:13:34 Duration: 1m30s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1245786') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-03-29 12:13:32 Duration: 1m27s Database: ctdprd51 User: pubeu Bind query: yes
17 76 42m59s 1s11ms 6m24s 33s938ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Mar 27 15 31 12m28s 24s129ms 16 12 7m21s 36s785ms 18 6 1m6s 11s71ms 20 5 14m6s 2m49s 21 1 26s628ms 26s628ms 22 18 7m7s 23s743ms 23 3 22s842ms 7s614ms [ User: load - Total duration: 13m29s - Times executed: 27 ]
[ Application: pg_bulkload - Total duration: 13m29s - Times executed: 27 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-03-27 20:24:57 Duration: 6m24s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-03-27 20:52:22 Duration: 5m21s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-03-27 15:49:25 Duration: 3m24s Bind query: yes
18 72 1m33s 1s9ms 2s563ms 1s303ms select count(*) from chem_disease cd where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?);Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Mar 29 12 72 1m33s 1s303ms -
SELECT /* ChemDiseaseAssnsDAO.rowCount */ COUNT(*) FROM chem_disease cd WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1379157');
Date: 2024-03-29 12:12:26 Duration: 2s563ms Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO.rowCount */ COUNT(*) FROM chem_disease cd WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1396322');
Date: 2024-03-29 12:12:14 Duration: 1s821ms Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO.rowCount */ COUNT(*) FROM chem_disease cd WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1265932');
Date: 2024-03-29 12:12:13 Duration: 1s754ms Bind query: yes
19 71 10m1s 1s23ms 36s867ms 8s472ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Mar 24 06 1 1s236ms 1s236ms 09 1 4s462ms 4s462ms Mar 25 03 2 2s611ms 1s305ms 04 1 36s867ms 36s867ms 05 3 3s787ms 1s262ms 07 13 2m39s 12s253ms 20 13 2m38s 12s202ms 21 13 2m40s 12s325ms Mar 26 10 1 6s503ms 6s503ms 17 1 1s388ms 1s388ms Mar 27 11 3 8s229ms 2s743ms 17 1 11s554ms 11s554ms 22 2 6s639ms 3s319ms 23 1 1s356ms 1s356ms Mar 28 05 1 2s452ms 2s452ms 09 2 2s132ms 1s66ms 23 3 7s5ms 2s335ms Mar 29 14 2 5s520ms 2s760ms 18 1 1s191ms 1s191ms 22 2 2s285ms 1s142ms Mar 30 02 2 4s72ms 2s36ms 08 1 8s487ms 8s487ms 20 1 5s608ms 5s608ms [ User: pubeu - Total duration: 4m41s - Times executed: 31 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 4290400;
Date: 2024-03-25 04:21:56 Duration: 36s867ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 150;
Date: 2024-03-25 07:06:02 Duration: 12s614ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 750;
Date: 2024-03-25 21:11:02 Duration: 12s592ms Database: ctdprd51 User: pubeu Bind query: yes
20 61 2h46m9s 1s376ms 18m14s 2m43s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Mar 24 03 1 1s500ms 1s500ms 09 1 3s125ms 3s125ms 13 1 17m15s 17m15s 16 1 3s18ms 3s18ms 19 1 1s962ms 1s962ms 22 3 10s725ms 3s575ms Mar 25 00 1 3s122ms 3s122ms 04 1 1s666ms 1s666ms 06 1 8m23s 8m23s 08 1 8m23s 8m23s 09 1 3s160ms 3s160ms 10 2 4s607ms 2s303ms 18 1 3s103ms 3s103ms 22 1 1s557ms 1s557ms 23 1 1s958ms 1s958ms Mar 26 04 1 1s571ms 1s571ms 08 1 2s879ms 2s879ms 09 1 1s376ms 1s376ms 10 1 3s101ms 3s101ms 19 1 1s949ms 1s949ms 23 2 6s426ms 3s213ms Mar 27 11 1 17m2s 17m2s 16 1 1s973ms 1s973ms 17 1 1s687ms 1s687ms 19 1 1s614ms 1s614ms 21 1 3s193ms 3s193ms Mar 28 02 1 3s643ms 3s643ms 03 1 1s464ms 1s464ms 09 1 4m25s 4m25s 13 1 3m35s 3m35s 14 1 17m22s 17m22s 17 2 5s136ms 2s568ms 19 1 1s671ms 1s671ms Mar 29 01 1 1s464ms 1s464ms 02 1 1s405ms 1s405ms 04 1 5m6s 5m6s 11 1 3s104ms 3s104ms 12 4 28m30s 7m7s 13 1 2s882ms 2s882ms 15 1 1s381ms 1s381ms 16 1 1s880ms 1s880ms Mar 30 00 1 3s90ms 3s90ms 01 2 25m55s 12m57s 02 1 3s78ms 3s78ms 03 2 3s100ms 1s550ms 10 1 1s435ms 1s435ms 15 1 2s975ms 2s975ms 20 1 11s573ms 11s573ms 21 1 3s64ms 3s64ms 22 1 17m7s 17m7s 23 1 11m2s 11m2s [ User: pubeu - Total duration: 1h24m6s - Times executed: 29 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-29 12:30:18 Duration: 18m14s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1230239') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-30 01:18:38 Duration: 17m26s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-28 14:20:16 Duration: 17m22s Database: ctdprd51 User: pubeu Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 1h55m8s 1h55m8s 1h55m8s 1 1h55m8s select pub1.maint_term_derive_data ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Mar 28 05 1 1h55m8s 1h55m8s -
select pub1.maint_term_derive_data ();
Date: 2024-03-28 05:06:11 Duration: 1h55m8s Bind query: yes
2 1h32m42s 1h32m42s 1h32m42s 1 1h32m42s select pub1.maint_gene_chem_ref_gene_form_refresh ();Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Mar 28 01 1 1h32m42s 1h32m42s -
select pub1.maint_gene_chem_ref_gene_form_refresh ();
Date: 2024-03-28 01:17:15 Duration: 1h32m42s Bind query: yes
3 59m23s 59m23s 59m23s 1 59m23s select maint_term_derive_nm_fts ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Mar 28 02 1 59m23s 59m23s -
SELECT maint_term_derive_nm_fts ();
Date: 2024-03-28 02:19:28 Duration: 59m23s Bind query: yes
4 45m57s 45m57s 45m57s 1 45m57s vacuum full analyze;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Mar 28 03 1 45m57s 45m57s -
VACUUM FULL ANALYZE;
Date: 2024-03-28 03:10:40 Duration: 45m57s Bind query: yes
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VACUUM FULL ANALYZE;
Date: 2024-03-28 02:24:43 Duration: 0ms
5 35m48s 35m48s 35m48s 1 35m48s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.object_type where cd = ?), ptr.term_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.phenotype_term_reference ptr, pub1.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Mar 27 19 1 35m48s 35m48s -
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 19:38:27 Duration: 35m48s Bind query: yes
6 35m41s 35m41s 35m41s 1 35m41s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.gene_go_annot gga, pub1.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Mar 27 20 1 35m41s 35m41s -
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 20:14:14 Duration: 35m41s Bind query: yes
7 35m34s 35m34s 35m34s 1 35m34s select pub1.maint_cached_value_refresh_data_metrics ();Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Mar 28 05 1 35m34s 35m34s -
select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-03-28 05:52:06 Duration: 35m34s Bind query: yes
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select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-03-28 05:47:48 Duration: 0ms
8 33m58s 33m58s 33m58s 1 33m58s select i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) from edit.ixn i, edit.reference_ixn r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in (...) order by i.id asc;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Mar 27 18 1 33m58s 33m58s -
SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;
Date: 2024-03-27 18:13:08 Duration: 33m58s Bind query: yes
9 24m20s 24m20s 24m20s 1 24m20s update pub1.gene_disease gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.gene_disease_reference gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.reference r where has_exposures = true));Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Mar 27 23 1 24m20s 24m20s -
update pub1.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));
Date: 2024-03-27 23:39:25 Duration: 24m20s Bind query: yes
10 23m15s 23m15s 23m15s 1 23m15s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Mar 30 19 1 23m15s 23m15s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2024-03-30 19:00:00 Duration: 23m15s
11 23m3s 23m3s 23m3s 1 23m3s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Mar 30 19 1 23m3s 23m3s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2024-03-30 19:39:38 Duration: 23m3s
12 21m15s 21m15s 21m15s 1 21m15s insert into pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.gene_go_annot;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Mar 27 17 1 21m15s 21m15s -
insert into pub1.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;
Date: 2024-03-27 17:31:16 Duration: 21m15s Bind query: yes
13 14m53s 17m19s 15m17s 7 1h47m5s select maint_query_logs_archive ();Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Mar 24 00 1 14m54s 14m54s Mar 25 00 1 14m53s 14m53s Mar 26 00 1 14m56s 14m56s Mar 27 00 1 14m55s 14m55s Mar 28 00 1 15m12s 15m12s Mar 29 00 1 14m55s 14m55s Mar 30 00 1 17m19s 17m19s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-03-30 00:17:20 Duration: 17m19s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-03-28 00:15:13 Duration: 15m12s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-03-26 00:14:58 Duration: 14m56s
14 9m25s 9m59s 9m33s 5 47m49s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by diseaseterm.nm_sort, phenotypeterm.nm_sort limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Mar 27 17 5 47m49s 9m33s [ User: pubeu - Total duration: 9m27s - Times executed: 1 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:47:32 Duration: 9m59s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:46:57 Duration: 9m28s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:46:55 Duration: 9m27s Database: ctdprd51 User: pubeu Bind query: yes
15 3s679ms 4m29s 3m4s 10 30m43s select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where diseaseterm.id = any (array ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?)) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Mar 25 11 1 7s309ms 7s309ms Mar 29 12 8 26m17s 3m17s 13 1 4m17s 4m17s [ User: pubeu - Total duration: 13m18s - Times executed: 6 ]
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where diseaseTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 3 and upper(baseTerm.nm) LIKE 'HYPERTENSION')) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-03-29 12:35:42 Duration: 4m29s Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where diseaseTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 3 and upper(baseTerm.nm) LIKE 'HYPERTENSION')) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-03-29 12:38:18 Duration: 4m22s Database: ctdprd51 User: pubeu Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where diseaseTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 3 and upper(baseTerm.nm) LIKE 'HYPERTENSION')) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-03-29 12:48:04 Duration: 4m19s Bind query: yes
16 1s376ms 18m14s 2m43s 61 2h46m9s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Mar 24 03 1 1s500ms 1s500ms 09 1 3s125ms 3s125ms 13 1 17m15s 17m15s 16 1 3s18ms 3s18ms 19 1 1s962ms 1s962ms 22 3 10s725ms 3s575ms Mar 25 00 1 3s122ms 3s122ms 04 1 1s666ms 1s666ms 06 1 8m23s 8m23s 08 1 8m23s 8m23s 09 1 3s160ms 3s160ms 10 2 4s607ms 2s303ms 18 1 3s103ms 3s103ms 22 1 1s557ms 1s557ms 23 1 1s958ms 1s958ms Mar 26 04 1 1s571ms 1s571ms 08 1 2s879ms 2s879ms 09 1 1s376ms 1s376ms 10 1 3s101ms 3s101ms 19 1 1s949ms 1s949ms 23 2 6s426ms 3s213ms Mar 27 11 1 17m2s 17m2s 16 1 1s973ms 1s973ms 17 1 1s687ms 1s687ms 19 1 1s614ms 1s614ms 21 1 3s193ms 3s193ms Mar 28 02 1 3s643ms 3s643ms 03 1 1s464ms 1s464ms 09 1 4m25s 4m25s 13 1 3m35s 3m35s 14 1 17m22s 17m22s 17 2 5s136ms 2s568ms 19 1 1s671ms 1s671ms Mar 29 01 1 1s464ms 1s464ms 02 1 1s405ms 1s405ms 04 1 5m6s 5m6s 11 1 3s104ms 3s104ms 12 4 28m30s 7m7s 13 1 2s882ms 2s882ms 15 1 1s381ms 1s381ms 16 1 1s880ms 1s880ms Mar 30 00 1 3s90ms 3s90ms 01 2 25m55s 12m57s 02 1 3s78ms 3s78ms 03 2 3s100ms 1s550ms 10 1 1s435ms 1s435ms 15 1 2s975ms 2s975ms 20 1 11s573ms 11s573ms 21 1 3s64ms 3s64ms 22 1 17m7s 17m7s 23 1 11m2s 11m2s [ User: pubeu - Total duration: 1h24m6s - Times executed: 29 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-29 12:30:18 Duration: 18m14s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1230239') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-30 01:18:38 Duration: 17m26s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-28 14:20:16 Duration: 17m22s Database: ctdprd51 User: pubeu Bind query: yes
17 1s11ms 6m24s 33s938ms 76 42m59s select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Mar 27 15 31 12m28s 24s129ms 16 12 7m21s 36s785ms 18 6 1m6s 11s71ms 20 5 14m6s 2m49s 21 1 26s628ms 26s628ms 22 18 7m7s 23s743ms 23 3 22s842ms 7s614ms [ User: load - Total duration: 13m29s - Times executed: 27 ]
[ Application: pg_bulkload - Total duration: 13m29s - Times executed: 27 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-03-27 20:24:57 Duration: 6m24s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-03-27 20:52:22 Duration: 5m21s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-03-27 15:49:25 Duration: 3m24s Bind query: yes
18 2s480ms 33m29s 15s844ms 175 46m12s select g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(r.acc_txt, ? order by r.acc_txt) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id group by g.nm, g.acc_txt, d.nm, d.acc_db_cd || ? || d.acc_txt, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by g.nm, d.nm;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Mar 28 13 175 46m12s 15s844ms [ User: qaeu - Total duration: 33m29s - Times executed: 1 ]
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-03-28 13:03:28 Duration: 33m29s Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-03-28 13:22:06 Duration: 5s848ms Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-03-28 13:28:10 Duration: 5s667ms Bind query: yes
19 1s2ms 1m33s 10s57ms 82 13m44s select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Mar 25 01 2 2s331ms 1s165ms 03 1 1s535ms 1s535ms 04 1 1s840ms 1s840ms 06 1 6s187ms 6s187ms 09 1 17s958ms 17s958ms 15 1 6s524ms 6s524ms 17 1 1s730ms 1s730ms 18 1 8s242ms 8s242ms 20 1 1s2ms 1s2ms Mar 26 00 1 17s857ms 17s857ms 05 1 1s217ms 1s217ms 07 1 6s628ms 6s628ms 23 3 1m1s 20s437ms Mar 27 21 1 9s599ms 9s599ms 22 1 1s835ms 1s835ms Mar 28 00 1 2s934ms 2s934ms 01 1 8s751ms 8s751ms 03 1 6s484ms 6s484ms 13 2 8s317ms 4s158ms 16 1 19s195ms 19s195ms 20 1 1s51ms 1s51ms Mar 29 00 2 6s792ms 3s396ms 02 8 1m 7s522ms 03 6 51s840ms 8s640ms 04 2 4s643ms 2s321ms 08 2 2s496ms 1s248ms 12 10 6m20s 38s81ms 16 2 9s733ms 4s866ms 19 1 7s294ms 7s294ms 21 2 2s175ms 1s87ms 22 2 2s618ms 1s309ms 23 2 3s910ms 1s955ms Mar 30 00 2 12s577ms 6s288ms 01 8 1m7s 8s449ms 03 1 2s370ms 2s370ms 05 1 1s60ms 1s60ms 09 1 1s61ms 1s61ms 15 1 1s292ms 1s292ms 17 2 3s971ms 1s985ms 19 1 8s483ms 8s483ms 21 1 1s288ms 1s288ms [ User: pubeu - Total duration: 6m59s - Times executed: 30 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1204159') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-03-29 12:13:37 Duration: 1m33s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1246113') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-03-29 12:13:34 Duration: 1m30s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1245786') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-03-29 12:13:32 Duration: 1m27s Database: ctdprd51 User: pubeu Bind query: yes
20 1s23ms 36s867ms 8s472ms 71 10m1s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Mar 24 06 1 1s236ms 1s236ms 09 1 4s462ms 4s462ms Mar 25 03 2 2s611ms 1s305ms 04 1 36s867ms 36s867ms 05 3 3s787ms 1s262ms 07 13 2m39s 12s253ms 20 13 2m38s 12s202ms 21 13 2m40s 12s325ms Mar 26 10 1 6s503ms 6s503ms 17 1 1s388ms 1s388ms Mar 27 11 3 8s229ms 2s743ms 17 1 11s554ms 11s554ms 22 2 6s639ms 3s319ms 23 1 1s356ms 1s356ms Mar 28 05 1 2s452ms 2s452ms 09 2 2s132ms 1s66ms 23 3 7s5ms 2s335ms Mar 29 14 2 5s520ms 2s760ms 18 1 1s191ms 1s191ms 22 2 2s285ms 1s142ms Mar 30 02 2 4s72ms 2s36ms 08 1 8s487ms 8s487ms 20 1 5s608ms 5s608ms [ User: pubeu - Total duration: 4m41s - Times executed: 31 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 4290400;
Date: 2024-03-25 04:21:56 Duration: 36s867ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 150;
Date: 2024-03-25 07:06:02 Duration: 12s614ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 750;
Date: 2024-03-25 21:11:02 Duration: 12s592ms Database: ctdprd51 User: pubeu Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 3s266ms 2 1s633ms 1s633ms 1s633ms select distinct ptr.phenotype_id, ptr.term_id, i.action_type_nm, i.action_type_cd, i.action_degree_type_nm, i.action_degree_type_cd from pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.IXN_AXN i where ptr.ixn_id = i.ixn_id;Times Reported Time consuming bind #1
Day Hour Count Duration Avg duration Mar 30 23 2 3s266ms 1s633ms -
select distinct ptr.phenotype_id, ptr.term_id, i.action_type_nm, i.action_type_cd, i.action_degree_type_nm, i.action_degree_type_cd from pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.IXN_AXN i where ptr.ixn_id = i.ixn_id;
Date: 2024-03-27 23:08:16 Duration: 1s633ms Database: postgres
2 0ms 249 0ms 0ms 0ms ;Times Reported Time consuming bind #2
Day Hour Count Duration Avg duration Mar 23 14 2 0ms 0ms Mar 24 06 2 0ms 0ms 07 2 0ms 0ms 08 6 0ms 0ms 16 6 0ms 0ms Mar 25 05 2 0ms 0ms 06 4 0ms 0ms 07 4 0ms 0ms 08 2 0ms 0ms 09 2 0ms 0ms 10 2 0ms 0ms 13 4 0ms 0ms 14 2 0ms 0ms 15 12 0ms 0ms Mar 26 08 10 0ms 0ms 09 6 0ms 0ms 11 2 0ms 0ms Mar 27 06 4 0ms 0ms 11 2 0ms 0ms 16 4 0ms 0ms Mar 28 00 1 0ms 0ms 02 1 0ms 0ms 03 1 0ms 0ms 06 2 0ms 0ms 07 6 0ms 0ms 11 2 0ms 0ms 12 2 0ms 0ms 13 2 0ms 0ms 14 2 0ms 0ms 15 2 0ms 0ms 16 10 0ms 0ms Mar 29 06 15 0ms 0ms 07 6 0ms 0ms 08 3 0ms 0ms 09 3 0ms 0ms 11 3 0ms 0ms 12 30 0ms 0ms 14 12 0ms 0ms 15 18 0ms 0ms 16 3 0ms 0ms Mar 30 10 6 0ms 0ms 11 6 0ms 0ms 12 27 0ms 0ms 17 6 0ms 0ms [ User: pubeu - Total duration: 12m24s - Times executed: 99 ]
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;
Date: Duration: 0ms Database: postgres parameters: $1 = '2056338'
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Events
Log levels
Key values
- 568,502 Log entries
Events distribution
Key values
- 0 PANIC entries
- 16 FATAL entries
- 39 ERROR entries
- 1425 WARNING entries
Most Frequent Errors/Events
Key values
- 1,152 Max number of times the same event was reported
- 1,480 Total events found
Rank Times reported Error 1 1,152 WARNING: skipping "..." --- only table or database owner can vacuum it
Times Reported Most Frequent Error / Event #1
Day Hour Count Mar 28 02 1,152 2 224 WARNING: skipping "..." --- only superuser or database owner can vacuum it
Times Reported Most Frequent Error / Event #2
Day Hour Count Mar 28 02 224 3 43 WARNING: skipping "..." --- only superuser can vacuum it
Times Reported Most Frequent Error / Event #3
Day Hour Count Mar 28 02 43 4 16 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #4
Day Hour Count Mar 27 19 2 20 1 Mar 28 17 2 Mar 29 02 5 03 6 5 14 FATAL: connection to client lost
Times Reported Most Frequent Error / Event #5
Day Hour Count Mar 24 13 1 Mar 25 15 2 Mar 27 11 1 20 4 Mar 28 02 1 14 1 Mar 29 12 1 Mar 30 01 1 22 1 23 1 6 14 LOG: could not send data to client: Broken pipe
Times Reported Most Frequent Error / Event #6
Day Hour Count Mar 24 13 1 Mar 25 15 2 Mar 27 11 1 20 4 Mar 28 02 1 14 1 Mar 29 12 1 Mar 30 01 1 22 1 23 1 7 6 WARNING: there is no transaction in progress
Times Reported Most Frequent Error / Event #7
Day Hour Count Mar 28 02 2 05 4 8 5 ERROR: canceling statement due to user request
Times Reported Most Frequent Error / Event #8
Day Hour Count Mar 27 20 4 Mar 28 02 1 - ERROR: canceling statement due to user request
Statement: SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = $1;
Date: 2024-03-27 20:29:08
9 2 FATAL: canceling authentication due to timeout
Times Reported Most Frequent Error / Event #9
Day Hour Count Mar 28 04 2 10 1 ERROR: zero-length delimited identifier at or near """"
Times Reported Most Frequent Error / Event #10
Day Hour Count Mar 27 12 1 - ERROR: zero-length delimited identifier at or near """" at character 47
Statement: -- This is the AGGREGATE Report: select nm as ""Underlying Term Name"" ,acc_txt as ""Underlying Term Accession"" ,synonym ,reference_acc_txt ,notes ,create_by ,create_tm from edit.term_label where acc_txt not in ( select acc_txt from pub2.term ) order by acc_txt
Date: 2024-03-27 12:32:46 Database: ctdprd51 Application: pgAdmin 4 - CONN:1446741 User: edit Remote:
11 1 ERROR: column reference "..." is ambiguous
Times Reported Most Frequent Error / Event #11
Day Hour Count Mar 28 09 1 - ERROR: column reference "create_tm" is ambiguous at character 29
Statement: select get_ixn_prose(i.id), create_tm, reference_acc_txt from ixn i ,reference_ixn ri where i.id in ( 8526921 ,8526940 ,8526936 ,8526924 ) and i.id = ri.ixn_id
Date: 2024-03-28 09:59:59
12 1 ERROR: function get_ixn_prose(...) does not exist
Times Reported Most Frequent Error / Event #12
Day Hour Count Mar 27 16 1 - ERROR: function get_ixn_prose(integer) does not exist at character 51
Hint: No function matches the given name and argument types. You might need to add explicit type casts.
Statement: select reference_acc_txt ,taxon_acc_txt ,get_ixn_prose( ixn_id ) ,create_by ,create_tm from edit.reference_ixn where taxon_acc_txt not in ( select acc_txt from load.term where object_type_id = ( select id from edit.object_type where cd = 'taxon' ) ) and taxon_acc_txt is not null and taxon_acc_txt <> ''Date: 2024-03-27 16:01:56 Database: ctdprd51 Application: pgAdmin 4 - CONN:7340018 User: load Remote:
13 1 ERROR: duplicate key value violates unique constraint "..."
Times Reported Most Frequent Error / Event #13
Day Hour Count Mar 28 11 1 - ERROR: duplicate key value violates unique constraint "reference_ixn_anatomy_ak1"
Detail: Key (reference_ixn_id, anatomy_nm)=(7123151, Hippocampus) already exists.
Statement: insert into edit.REFERENCE_IXN_ANATOMY (reference_ixn_id,anatomy_acc_txt,anatomy_acc_db_id,anatomy_nm,level_seq,create_by,create_tm,mod_by,mod_tm) values (7123151,'D006624',21,'Hippocampus',4,'fbarkalo','2024-03-28 11:56:32.315','fbarkalo','2024-03-28 11:56:32.315')Date: 2024-03-28 11:56:32