pgBadger-
Global information
- Generated on Sun Jun 2 04:15:15 2024
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20240601
- Parsed 230,289 log entries in 14s
- Log start from 2024-05-26 00:00:01 to 2024-06-01 23:59:57
-
Overview
Global Stats
- 605 Number of unique normalized queries
- 12,373 Number of queries
- 2d4h50m25s Total query duration
- 2024-05-26 00:07:01 First query
- 2024-06-01 23:58:49 Last query
- 3 queries/s at 2024-05-30 04:49:16 Query peak
- 2d4h50m25s Total query duration
- 0ms Prepare/parse total duration
- 2s832ms Bind total duration
- 2d4h50m23s Execute total duration
- 1,380 Number of events
- 18 Number of unique normalized events
- 1,024 Max number of times the same event was reported
- 0 Number of cancellation
- 141 Total number of automatic vacuums
- 301 Total number of automatic analyzes
- 2,898 Number temporary file
- 39.66 GiB Max size of temporary file
- 190.07 MiB Average size of temporary file
- 19,776 Total number of sessions
- 104 sessions at 2024-05-30 03:02:24 Session peak
- 298d8h12m9s Total duration of sessions
- 21m43s Average duration of sessions
- 0 Average queries per session
- 9s619ms Average queries duration per session
- 21m33s Average idle time per session
- 19,776 Total number of connections
- 37 connections/s at 2024-05-31 09:24:06 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 3 queries/s Query Peak
- 2024-05-30 04:49:16 Date
SELECT Traffic
Key values
- 3 queries/s Query Peak
- 2024-05-30 04:49:16 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2024-05-27 18:00:15 Date
Queries duration
Key values
- 2d4h50m25s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) May 26 00 52 0ms 15m52s 20s319ms 4s563ms 6s570ms 15m58s 01 53 0ms 18s688ms 2s325ms 5s240ms 9s5ms 21s181ms 02 62 0ms 4m33s 7s355ms 8s339ms 13s132ms 4m38s 03 59 0ms 6s163ms 1s878ms 5s685ms 6s813ms 8s670ms 04 62 0ms 14s959ms 2s428ms 6s904ms 11s392ms 22s518ms 05 97 0ms 7s602ms 2s78ms 8s626ms 18s315ms 24s876ms 06 61 0ms 4m31s 7s757ms 7s462ms 42s767ms 4m36s 07 43 0ms 15s109ms 1s903ms 4s21ms 6s549ms 15s109ms 08 40 0ms 6s594ms 1s963ms 3s695ms 6s722ms 9s42ms 09 39 0ms 39s984ms 3s689ms 3s783ms 9s261ms 41s348ms 10 55 0ms 4m1s 7s354ms 6s249ms 38s505ms 4m1s 11 37 0ms 7s848ms 2s28ms 4s81ms 5s184ms 9s146ms 12 52 0ms 7m8s 10s415ms 3s598ms 8s772ms 7m8s 13 48 0ms 38s692ms 2s597ms 5s44ms 12s436ms 39s825ms 14 65 0ms 32s371ms 2s790ms 6s468ms 18s64ms 53s776ms 15 51 0ms 56s325ms 3s383ms 6s280ms 17s391ms 56s325ms 16 39 0ms 8s68ms 2s180ms 5s37ms 6s221ms 9s213ms 17 58 0ms 12s785ms 2s119ms 5s355ms 9s618ms 14s643ms 18 65 0ms 1m4s 4s407ms 14s151ms 39s176ms 1m5s 19 50 0ms 4m 6s579ms 4s723ms 6s693ms 4m3s 20 61 0ms 6s577ms 1s815ms 5s622ms 8s354ms 11s792ms 21 42 0ms 9s119ms 2s139ms 5s425ms 6s640ms 10s502ms 22 65 0ms 6s554ms 1s798ms 5s516ms 7s491ms 11s253ms 23 56 0ms 51s805ms 2s587ms 4s346ms 7s988ms 51s805ms May 27 00 62 0ms 16m 17s608ms 7s687ms 7s907ms 16m7s 01 40 0ms 12s15ms 2s712ms 7s566ms 10s443ms 12s965ms 02 62 0ms 4s936ms 1s666ms 5s47ms 6s245ms 8s331ms 03 64 0ms 5s441ms 1s851ms 5s333ms 6s623ms 8s627ms 04 58 0ms 25s136ms 2s465ms 5s584ms 8s651ms 25s136ms 05 84 0ms 8s668ms 2s145ms 10s633ms 14s672ms 35s524ms 06 60 0ms 32s668ms 3s569ms 8s22ms 24s806ms 52s320ms 07 44 0ms 3m35s 6s800ms 5s171ms 6s437ms 3m38s 08 50 0ms 25s302ms 2s617ms 6s84ms 11s818ms 26s584ms 09 52 0ms 6s396ms 2s444ms 6s395ms 12s473ms 21s238ms 10 51 0ms 32s653ms 3s648ms 6s438ms 16s777ms 52s339ms 11 44 0ms 17m6s 25s496ms 4s752ms 12s889ms 17m11s 12 51 0ms 6s805ms 1s920ms 6s115ms 6s316ms 12s121ms 13 45 0ms 7s415ms 2s29ms 4s672ms 6s30ms 20s441ms 14 48 0ms 33s243ms 4s290ms 9s402ms 34s397ms 54s22ms 15 38 0ms 5s331ms 1s620ms 2s623ms 4s847ms 6s493ms 16 47 0ms 6s704ms 1s922ms 5s648ms 6s857ms 17s86ms 17 48 0ms 39s244ms 2s729ms 3s714ms 14s45ms 40s402ms 18 61 0ms 32s436ms 3s103ms 7s560ms 11s443ms 52s350ms 19 48 0ms 5s172ms 1s570ms 4s50ms 4s400ms 8s77ms 20 43 0ms 7s868ms 1s754ms 3s900ms 5s97ms 7s868ms 21 55 0ms 5s8ms 1s615ms 4s865ms 5s284ms 6s112ms 22 57 0ms 1m17s 3s784ms 9s584ms 13s883ms 1m17s 23 74 0ms 1m22s 10s12ms 14s809ms 32s828ms 6m28s May 28 00 53 0ms 15m56s 25s368ms 4s808ms 22s637ms 15m56s 01 47 0ms 17s21ms 2s668ms 5s415ms 8s95ms 18s179ms 02 39 0ms 29s556ms 2s177ms 3s683ms 4s872ms 29s556ms 03 64 0ms 17s339ms 2s413ms 4s568ms 14s59ms 38s590ms 04 45 0ms 8s150ms 1s958ms 4s399ms 8s150ms 10s453ms 05 83 0ms 5s854ms 1s932ms 6s201ms 14s906ms 20s425ms 06 56 0ms 9m9s 13s47ms 7s959ms 34s918ms 9m11s 07 50 0ms 4s720ms 1s552ms 3s425ms 3s892ms 9s340ms 08 62 0ms 1m7s 4s148ms 7s227ms 12s450ms 1m8s 09 52 0ms 1m8s 3s487ms 5s299ms 9s952ms 1m9s 10 48 0ms 32s570ms 3s774ms 5s74ms 13s51ms 52s469ms 11 53 0ms 7s109ms 1s922ms 4s609ms 7s410ms 9s272ms 12 45 0ms 3m46s 7s992ms 5s790ms 13s1ms 3m48s 13 58 0ms 5s717ms 2s181ms 5s717ms 7s261ms 13s291ms 14 65 0ms 4m19s 7s11ms 7s513ms 39s478ms 4m21s 15 59 0ms 39s858ms 2s800ms 6s300ms 8s202ms 41s61ms 16 65 0ms 13s705ms 3s94ms 10s736ms 16s300ms 42s441ms 17 76 0ms 3m48s 11s199ms 1m5s 1m28s 4m2s 18 48 0ms 1m3s 5s354ms 9s507ms 40s611ms 1m3s 19 53 0ms 6s420ms 1s491ms 2s728ms 7s536ms 9s960ms 20 39 0ms 34s400ms 2s458ms 3s555ms 5s441ms 34s400ms 21 50 0ms 6s234ms 1s540ms 3s985ms 6s234ms 6s709ms 22 49 0ms 6s426ms 1s953ms 5s251ms 6s851ms 12s216ms 23 87 0ms 48s744ms 4s213ms 9s354ms 40s482ms 2m23s May 29 00 61 0ms 16m1s 18s920ms 12s453ms 26s514ms 16m8s 01 59 0ms 7s904ms 1s955ms 6s266ms 9s13ms 13s960ms 02 68 0ms 48s991ms 3s129ms 6s913ms 12s138ms 48s991ms 03 54 0ms 44s753ms 2s879ms 6s379ms 7s497ms 44s753ms 04 47 0ms 5s326ms 1s853ms 4s108ms 6s496ms 8s623ms 05 98 0ms 14s832ms 2s738ms 14s670ms 17s843ms 25s164ms 06 68 0ms 32s570ms 3s202ms 8s813ms 14s564ms 52s467ms 07 63 0ms 3m36s 5s611ms 8s188ms 9s155ms 3m37s 08 62 0ms 1m46s 10s53ms 1m5s 1m20s 2m15s 09 42 0ms 45s406ms 2s741ms 2s687ms 5s963ms 47s722ms 10 57 0ms 32s441ms 3s677ms 5s323ms 32s42ms 55s508ms 11 49 0ms 9s66ms 1s814ms 4s890ms 7s388ms 11s434ms 12 42 0ms 1m32s 7s48ms 4s927ms 30s523ms 2m42s 13 63 0ms 6s937ms 1s970ms 5s849ms 8s832ms 10s697ms 14 62 0ms 32s637ms 3s253ms 6s825ms 11s234ms 55s589ms 15 32 0ms 6s886ms 2s279ms 4s867ms 6s412ms 7s736ms 16 39 0ms 15s512ms 2s430ms 3s953ms 7s432ms 21s225ms 17 60 0ms 23m6s 41s367ms 6s520ms 3m13s 23m8s 18 67 0ms 34m6s 50s431ms 1m2s 4m44s 34m20s 19 116 0ms 51s124ms 19s264ms 1m13s 1m17s 1m22s 20 159 1s30ms 39m46s 52s586ms 1m18s 2m46s 40m22s 21 181 1s111ms 6m27s 30s596ms 2m48s 4m13s 7m49s 22 163 1s12ms 57s653ms 23s68ms 1m22s 1m36s 2m45s 23 151 0ms 12m17s 26s258ms 1m48s 4m20s 13m32s May 30 00 56 0ms 23m2s 49s9ms 21s662ms 2m4s 23m3s 01 52 0ms 1h35m57s 1m57s 7s864ms 1m36s 1h35m57s 02 101 0ms 43s117ms 16s41ms 1m15s 1m22s 1m36s 03 152 1s9ms 1h7m21s 1m10s 1m27s 3m43s 1h8m43s 04 141 1s11ms 37s505ms 24s669ms 1m13s 1m15s 1m46s 05 146 1s23ms 1h56m 1m9s 1m13s 2m 1h56m59s 06 135 1s45ms 33m23s 44s775ms 1m20s 1m53s 33m58s 07 136 1s30ms 36s58ms 24s231ms 1m11s 1m12s 1m14s 08 149 1s115ms 3m37s 24s763ms 1m14s 1m14s 4m51s 09 149 1s33ms 39s190ms 23s751ms 1m15s 1m25s 1m39s 10 197 1s3ms 54s858ms 18s831ms 1m17s 1m50s 2m9s 11 168 0ms 1m14s 22s586ms 1m27s 2m1s 2m31s 12 349 1s1ms 33m14s 18s370ms 1m46s 1m47s 34m37s 13 144 1s110ms 2m7s 26s403ms 1m17s 1m31s 3m3s 14 159 1s33ms 38s718ms 22s693ms 1m14s 1m23s 2m5s 15 134 1s112ms 38s610ms 25s714ms 1m13s 1m14s 1m16s 16 140 1s111ms 37s564ms 24s821ms 1m14s 1m15s 1m17s 17 119 1s11ms 36s492ms 28s673ms 1m11s 1m12s 1m14s 18 180 1s18ms 1m3s 20s609ms 1m19s 1m25s 2m7s 19 137 1s112ms 36s818ms 25s309ms 1m14s 1m15s 1m19s 20 135 1s111ms 37s999ms 25s638ms 1m15s 1m17s 1m18s 21 143 1s114ms 39s106ms 24s680ms 1m16s 1m17s 1m54s 22 148 1s57ms 8m27s 27s115ms 1m15s 1m16s 9m39s 23 137 1s37ms 37s165ms 25s25ms 1m13s 1m13s 1m14s May 31 00 141 1s112ms 16m10s 31s611ms 1m15s 1m18s 17m34s 01 149 1s114ms 39s93ms 23s423ms 1m17s 1m19s 1m27s 02 133 1s1ms 37s478ms 26s210ms 1m14s 1m17s 1m19s 03 153 1s13ms 38s52ms 22s678ms 1m15s 1m17s 1m20s 04 142 1s55ms 39s527ms 24s528ms 1m16s 1m17s 1m23s 05 154 0ms 37s980ms 14s723ms 1m14s 1m16s 1m26s 06 46 0ms 17m6s 25s749ms 5s210ms 43s321ms 17m6s 07 41 0ms 8s394ms 1s925ms 4s312ms 7s167ms 14s739ms 08 49 0ms 6s6ms 1s708ms 3s765ms 6s180ms 10s586ms 09 58 0ms 3m35s 9s870ms 10s215ms 42s457ms 5m8s 10 62 0ms 32s643ms 3s653ms 17s172ms 24s788ms 53s413ms 11 49 0ms 5s83ms 1s508ms 2s514ms 4s689ms 8s868ms 12 39 0ms 8s356ms 1s881ms 2s572ms 5s823ms 9s516ms 13 38 0ms 7s378ms 2s101ms 5s288ms 7s266ms 7s378ms 14 50 0ms 32s605ms 3s935ms 7s333ms 16s569ms 54s592ms 15 83 0ms 12s273ms 2s35ms 7s36ms 12s995ms 24s681ms 16 38 0ms 4s687ms 1s447ms 2s894ms 3s859ms 5s879ms 17 54 0ms 5s502ms 1s775ms 4s863ms 6s644ms 9s224ms 18 51 0ms 32s934ms 3s507ms 6s9ms 10s573ms 53s349ms 19 53 0ms 13s644ms 1s758ms 4s80ms 6s892ms 15s838ms 20 47 0ms 6s699ms 1s692ms 4s58ms 5s898ms 7s898ms 21 37 0ms 6s342ms 1s735ms 5s2ms 5s980ms 9s996ms 22 56 0ms 12s505ms 2s51ms 5s387ms 7s630ms 13s636ms 23 51 0ms 14s120ms 2s571ms 5s237ms 14s120ms 22s8ms Jun 01 00 65 0ms 16m5s 16s795ms 6s127ms 8s86ms 16m16s 01 63 0ms 6s150ms 2s84ms 5s380ms 9s188ms 17s69ms 02 74 0ms 17s145ms 2s401ms 7s511ms 8s497ms 22s974ms 03 46 0ms 12s488ms 2s46ms 4s953ms 6s753ms 14s754ms 04 39 0ms 5s152ms 1s444ms 2s467ms 3s684ms 7s840ms 05 88 0ms 4s966ms 1s797ms 4s966ms 15s858ms 26s98ms 06 64 0ms 6s970ms 2s9ms 6s752ms 8s596ms 11s15ms 07 47 0ms 3m7s 6s464ms 5s118ms 8s168ms 3m27s 08 47 0ms 6s623ms 2s65ms 5s198ms 8s703ms 10s27ms 09 46 0ms 5s256ms 1s742ms 4s359ms 6s373ms 9s705ms 10 54 0ms 10s970ms 2s623ms 6s845ms 9s423ms 10s970ms 11 54 0ms 4s229ms 2s224ms 6s182ms 6s409ms 8s950ms 12 27 0ms 4s763ms 1s836ms 2s751ms 4s479ms 6s694ms 13 49 0ms 8s53ms 1s940ms 5s151ms 6s108ms 15s142ms 14 57 0ms 6s966ms 2s174ms 6s495ms 6s966ms 9s113ms 15 39 0ms 5m23s 9s824ms 3s241ms 4s792ms 5m23s 16 36 0ms 11s403ms 2s554ms 7s227ms 9s601ms 13s982ms 17 37 0ms 5s937ms 2s178ms 5s202ms 6s737ms 10s911ms 18 79 0ms 1m11s 7s347ms 53s687ms 1m4s 1m19s 19 82 0ms 23m16s 57s876ms 2m41s 7m4s 24m4s 20 51 0ms 7s298ms 1s482ms 2s603ms 4s303ms 12s617ms 21 48 0ms 6s404ms 1s654ms 5s538ms 7s173ms 8s972ms 22 42 0ms 7s399ms 2s632ms 6s247ms 9s287ms 13s311ms 23 51 0ms 6s671ms 1s634ms 3s565ms 7s951ms 10s12ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) May 26 00 51 0 20s621ms 2s945ms 4s563ms 22s556ms 01 53 0 2s325ms 3s643ms 5s240ms 21s181ms 02 62 0 7s355ms 5s151ms 8s339ms 48s111ms 03 59 0 1s878ms 3s558ms 5s685ms 8s268ms 04 62 0 2s428ms 3s623ms 6s904ms 16s283ms 05 95 0 2s52ms 4s859ms 8s626ms 24s347ms 06 51 10 7s757ms 4s200ms 7s462ms 52s417ms 07 43 0 1s903ms 2s367ms 4s21ms 9s562ms 08 40 0 1s963ms 2s710ms 3s695ms 8s997ms 09 39 0 3s689ms 2s368ms 3s783ms 39s688ms 10 47 8 7s354ms 4s137ms 6s249ms 4m1s 11 37 0 2s28ms 3s194ms 4s81ms 9s146ms 12 51 0 10s582ms 2s481ms 3s598ms 42s169ms 13 48 0 2s597ms 2s472ms 5s44ms 12s730ms 14 55 10 2s790ms 4s115ms 6s793ms 52s571ms 15 51 0 3s383ms 3s956ms 6s280ms 17s461ms 16 39 0 2s180ms 4s131ms 5s37ms 9s213ms 17 58 0 2s119ms 3s865ms 5s355ms 14s111ms 18 55 10 4s407ms 6s821ms 10s427ms 1m5s 19 50 0 6s579ms 3s585ms 4s723ms 9s307ms 20 61 0 1s815ms 3s740ms 5s622ms 10s93ms 21 42 0 2s139ms 3s867ms 5s425ms 10s502ms 22 65 0 1s798ms 3s618ms 5s516ms 7s654ms 23 56 0 2s587ms 3s659ms 4s346ms 8s728ms May 27 00 61 0 17s817ms 4s710ms 7s687ms 16m2s 01 40 0 2s712ms 5s34ms 7s566ms 12s965ms 02 62 0 1s666ms 3s701ms 5s47ms 7s618ms 03 64 0 1s851ms 3s790ms 5s333ms 6s890ms 04 58 0 2s465ms 4s345ms 5s584ms 15s166ms 05 82 0 2s116ms 4s151ms 10s633ms 35s524ms 06 50 10 3s569ms 3s868ms 8s22ms 39s504ms 07 44 0 6s800ms 2s683ms 5s171ms 6s467ms 08 50 0 2s617ms 3s639ms 6s84ms 12s463ms 09 52 0 2s444ms 3s612ms 6s395ms 13s332ms 10 41 10 3s648ms 2s765ms 6s438ms 39s457ms 11 44 0 25s496ms 3s399ms 4s752ms 13s755ms 12 51 0 1s920ms 3s892ms 6s115ms 12s121ms 13 45 0 2s29ms 2s490ms 4s672ms 8s883ms 14 38 10 4s290ms 2s477ms 9s402ms 39s266ms 15 38 0 1s620ms 2s362ms 2s623ms 5s579ms 16 47 0 1s922ms 2s524ms 5s648ms 17s86ms 17 48 0 2s729ms 2s511ms 3s714ms 14s361ms 18 51 10 3s103ms 3s678ms 7s560ms 39s247ms 19 48 0 1s570ms 2s512ms 4s50ms 8s77ms 20 43 0 1s754ms 2s497ms 3s900ms 6s646ms 21 55 0 1s615ms 3s649ms 4s865ms 6s112ms 22 57 0 3s784ms 5s195ms 9s584ms 1m17s 23 74 0 10s12ms 5s113ms 14s809ms 2m44s May 28 00 52 0 25s764ms 2s488ms 4s654ms 4m50s 01 47 0 2s668ms 3s890ms 5s415ms 12s402ms 02 39 0 2s177ms 2s369ms 3s683ms 29s556ms 03 64 0 2s413ms 3s670ms 4s568ms 14s660ms 04 45 0 1s958ms 2s761ms 4s399ms 10s453ms 05 79 0 1s919ms 3s428ms 6s201ms 19s892ms 06 48 8 13s47ms 3s543ms 7s959ms 39s306ms 07 50 0 1s552ms 2s403ms 3s425ms 7s821ms 08 62 0 4s148ms 3s910ms 7s227ms 1m7s 09 52 0 3s487ms 3s716ms 5s299ms 20s498ms 10 38 10 3s774ms 3s817ms 5s377ms 39s405ms 11 53 0 1s922ms 3s656ms 4s609ms 7s578ms 12 45 0 7s992ms 2s395ms 5s790ms 53s149ms 13 54 0 2s137ms 4s340ms 5s608ms 7s261ms 14 55 10 7s11ms 3s877ms 7s513ms 52s666ms 15 59 0 2s800ms 5s164ms 6s300ms 11s703ms 16 64 0 2s975ms 4s924ms 6s821ms 42s441ms 17 76 0 11s199ms 15s412ms 1m5s 1m35s 18 39 9 5s354ms 3s783ms 8s351ms 1m3s 19 53 0 1s491ms 2s388ms 2s728ms 9s960ms 20 39 0 2s458ms 2s342ms 3s555ms 34s400ms 21 50 0 1s540ms 2s387ms 3s985ms 6s535ms 22 49 0 1s953ms 3s431ms 5s251ms 12s216ms 23 87 0 4s213ms 4s719ms 9s354ms 45s227ms May 29 00 60 0 19s154ms 4s164ms 12s453ms 45s763ms 01 59 0 1s955ms 2s994ms 6s266ms 12s969ms 02 68 0 3s129ms 4s416ms 6s913ms 43s566ms 03 54 0 2s879ms 4s785ms 6s379ms 12s212ms 04 47 0 1s853ms 3s441ms 4s108ms 6s956ms 05 95 0 2s743ms 6s938ms 14s670ms 24s289ms 06 59 9 3s202ms 4s872ms 8s336ms 39s416ms 07 62 0 5s672ms 4s874ms 7s433ms 9s531ms 08 61 0 10s165ms 6s605ms 1m5s 1m21s 09 41 0 2s749ms 2s211ms 2s687ms 7s518ms 10 47 10 3s677ms 3s276ms 5s323ms 39s265ms 11 48 0 1s812ms 2s377ms 4s890ms 8s356ms 12 38 0 4s301ms 3s124ms 4s881ms 1m9s 13 63 0 1s970ms 4s785ms 5s849ms 9s347ms 14 52 10 3s253ms 4s940ms 6s825ms 39s576ms 15 32 0 2s279ms 3s515ms 4s867ms 7s736ms 16 39 0 2s430ms 1s292ms 3s953ms 15s727ms 17 55 0 1s611ms 2s427ms 3s858ms 6s520ms 18 50 10 48s726ms 4s16ms 9s463ms 10m22s 19 116 0 19s264ms 1m11s 1m13s 1m18s 20 159 0 52s586ms 1m15s 1m18s 40m11s 21 148 0 29s507ms 1m16s 1m22s 5m59s 22 163 0 23s68ms 1m15s 1m22s 2m38s 23 114 0 21s792ms 1m13s 1m18s 1m41s May 30 00 45 0 23s170ms 2s231ms 3s946ms 8s75ms 01 50 0 1m58s 3s348ms 6s271ms 1m36s 02 101 0 16s41ms 1m13s 1m15s 1m24s 03 138 0 55s654ms 1m19s 1m24s 3m39s 04 141 0 24s669ms 1m12s 1m13s 1m16s 05 142 0 1m11s 1m11s 1m13s 2m3s 06 126 9 44s775ms 1m16s 1m18s 10m6s 07 136 0 24s231ms 1m11s 1m11s 1m14s 08 149 0 24s763ms 1m12s 1m14s 1m15s 09 148 0 23s899ms 1m12s 1m15s 1m26s 10 185 10 19s2ms 1m11s 1m13s 1m30s 11 166 0 22s831ms 1m16s 1m27s 2m2s 12 349 0 18s370ms 1m44s 1m46s 1m48s 13 143 0 26s578ms 1m14s 1m17s 2m52s 14 148 10 22s824ms 1m12s 1m14s 1m17s 15 134 0 25s714ms 1m12s 1m13s 1m15s 16 140 0 24s821ms 1m13s 1m14s 1m15s 17 119 0 28s673ms 1m11s 1m11s 1m12s 18 170 10 20s609ms 1m13s 1m18s 1m25s 19 137 0 25s309ms 1m12s 1m14s 1m16s 20 135 0 25s638ms 1m13s 1m15s 1m18s 21 143 0 24s680ms 1m14s 1m16s 1m19s 22 148 0 27s115ms 1m13s 1m15s 1m16s 23 137 0 25s25ms 1m13s 1m13s 1m13s May 31 00 140 0 31s802ms 1m14s 1m15s 1m19s 01 149 0 23s423ms 1m14s 1m17s 1m20s 02 133 0 26s210ms 1m13s 1m14s 1m18s 03 153 0 22s678ms 1m14s 1m15s 1m18s 04 141 0 24s688ms 1m14s 1m16s 1m18s 05 151 0 14s963ms 1m13s 1m14s 1m16s 06 36 10 25s749ms 1s452ms 5s210ms 53s502ms 07 41 0 1s925ms 2s399ms 4s312ms 10s899ms 08 48 0 1s704ms 2s375ms 3s765ms 9s619ms 09 54 0 10s441ms 2s26ms 10s215ms 5m8s 10 52 10 3s653ms 5s577ms 11s393ms 53s413ms 11 49 0 1s508ms 2s408ms 2s514ms 6s742ms 12 39 0 1s881ms 2s339ms 2s572ms 6s161ms 13 38 0 2s101ms 2s491ms 5s288ms 7s378ms 14 40 10 3s935ms 3s583ms 7s333ms 39s516ms 15 81 0 2s31ms 3s929ms 7s36ms 23s116ms 16 38 0 1s447ms 1s557ms 2s894ms 5s879ms 17 54 0 1s775ms 2s574ms 4s863ms 8s63ms 18 41 10 3s507ms 3s608ms 6s9ms 39s806ms 19 53 0 1s758ms 3s397ms 4s80ms 15s838ms 20 47 0 1s692ms 2s271ms 4s58ms 7s639ms 21 36 0 1s728ms 1s387ms 5s2ms 8s145ms 22 56 0 2s51ms 2s757ms 5s387ms 13s636ms 23 51 0 2s571ms 3s804ms 5s237ms 15s672ms Jun 01 00 63 0 17s221ms 3s855ms 6s127ms 10s162ms 01 63 0 2s84ms 4s265ms 5s380ms 9s495ms 02 73 0 2s400ms 5s240ms 7s254ms 11s300ms 03 46 0 2s46ms 3s542ms 4s953ms 14s754ms 04 39 0 1s444ms 1s339ms 2s467ms 7s840ms 05 84 0 1s778ms 3s584ms 4s966ms 24s587ms 06 64 0 2s9ms 5s7ms 6s752ms 8s656ms 07 47 0 6s464ms 4s449ms 5s118ms 3m27s 08 47 0 2s65ms 3s682ms 5s198ms 9s666ms 09 46 0 1s742ms 2s498ms 4s359ms 6s428ms 10 54 0 2s623ms 5s466ms 6s845ms 10s338ms 11 54 0 2s224ms 4s24ms 6s182ms 6s928ms 12 26 0 1s832ms 1s279ms 2s751ms 6s694ms 13 49 0 1s940ms 2s642ms 5s151ms 15s142ms 14 57 0 2s174ms 5s220ms 6s495ms 9s113ms 15 39 0 9s824ms 2s358ms 3s241ms 8s939ms 16 36 0 2s554ms 2s436ms 7s227ms 10s245ms 17 37 0 2s178ms 2s845ms 5s202ms 8s332ms 18 53 26 7s347ms 8s292ms 49s670ms 1m11s 19 37 45 57s876ms 1m11s 2m41s 24m4s 20 51 0 1s482ms 2s350ms 2s603ms 4s888ms 21 48 0 1s654ms 2s284ms 5s538ms 8s972ms 22 42 0 2s632ms 4s217ms 6s247ms 9s939ms 23 51 0 1s634ms 2s348ms 3s565ms 9s129ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) May 26 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms May 27 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms May 28 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 1 0 0 0 10s736ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms May 29 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 5 0 0 0 7m58s 0ms 0ms 3m12s 18 7 0 0 0 1m5s 0ms 0ms 1m52s 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 12 5 0 0 22s151ms 0ms 0ms 1m17s May 30 00 5 4 0 0 3m8s 0ms 0ms 1m38s 01 1 0 0 0 2m39s 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms May 31 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Jun 01 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare May 26 00 0 50 50.00 0.00% 01 0 53 53.00 0.00% 02 0 62 62.00 0.00% 03 0 59 59.00 0.00% 04 0 62 62.00 0.00% 05 0 97 97.00 0.00% 06 0 51 51.00 0.00% 07 0 46 46.00 0.00% 08 0 46 46.00 0.00% 09 0 44 44.00 0.00% 10 0 49 49.00 0.00% 11 0 37 37.00 0.00% 12 0 52 52.00 0.00% 13 0 48 48.00 0.00% 14 0 55 55.00 0.00% 15 0 51 51.00 0.00% 16 0 39 39.00 0.00% 17 0 58 58.00 0.00% 18 0 55 55.00 0.00% 19 0 50 50.00 0.00% 20 0 61 61.00 0.00% 21 0 42 42.00 0.00% 22 0 65 65.00 0.00% 23 0 56 56.00 0.00% May 27 00 0 61 61.00 0.00% 01 0 40 40.00 0.00% 02 0 62 62.00 0.00% 03 0 64 64.00 0.00% 04 0 58 58.00 0.00% 05 0 84 84.00 0.00% 06 0 62 62.00 0.00% 07 0 54 54.00 0.00% 08 0 54 54.00 0.00% 09 0 52 52.00 0.00% 10 0 41 41.00 0.00% 11 0 44 44.00 0.00% 12 0 51 51.00 0.00% 13 0 45 45.00 0.00% 14 0 42 42.00 0.00% 15 0 39 39.00 0.00% 16 0 47 47.00 0.00% 17 0 48 48.00 0.00% 18 0 51 51.00 0.00% 19 0 48 48.00 0.00% 20 0 43 43.00 0.00% 21 0 55 55.00 0.00% 22 0 57 57.00 0.00% 23 0 74 74.00 0.00% May 28 00 0 51 51.00 0.00% 01 0 47 47.00 0.00% 02 0 39 39.00 0.00% 03 0 64 64.00 0.00% 04 0 45 45.00 0.00% 05 0 95 95.00 0.00% 06 0 64 64.00 0.00% 07 0 54 54.00 0.00% 08 0 62 62.00 0.00% 09 0 52 52.00 0.00% 10 0 42 42.00 0.00% 11 0 57 57.00 0.00% 12 0 55 55.00 0.00% 13 0 56 56.00 0.00% 14 0 56 56.00 0.00% 15 0 61 61.00 0.00% 16 0 64 64.00 0.00% 17 0 78 78.00 0.00% 18 0 39 39.00 0.00% 19 0 53 53.00 0.00% 20 0 39 39.00 0.00% 21 0 50 50.00 0.00% 22 0 49 49.00 0.00% 23 0 87 87.00 0.00% May 29 00 0 59 59.00 0.00% 01 0 59 59.00 0.00% 02 0 68 68.00 0.00% 03 0 54 54.00 0.00% 04 0 47 47.00 0.00% 05 0 98 98.00 0.00% 06 0 63 63.00 0.00% 07 0 80 80.00 0.00% 08 0 67 67.00 0.00% 09 0 43 43.00 0.00% 10 0 50 50.00 0.00% 11 0 50 50.00 0.00% 12 0 36 36.00 0.00% 13 0 63 63.00 0.00% 14 0 52 52.00 0.00% 15 0 32 32.00 0.00% 16 0 39 39.00 0.00% 17 0 61 61.00 0.00% 18 0 59 59.00 0.00% 19 0 116 116.00 0.00% 20 0 159 159.00 0.00% 21 0 181 181.00 0.00% 22 0 163 163.00 0.00% 23 0 151 151.00 0.00% May 30 00 0 54 54.00 0.00% 01 0 53 53.00 0.00% 02 0 101 101.00 0.00% 03 0 152 152.00 0.00% 04 0 144 144.00 0.00% 05 0 147 147.00 0.00% 06 0 130 130.00 0.00% 07 0 141 141.00 0.00% 08 0 149 149.00 0.00% 09 0 126 126.00 0.00% 10 0 186 186.00 0.00% 11 0 169 169.00 0.00% 12 0 349 349.00 0.00% 13 0 142 142.00 0.00% 14 0 149 149.00 0.00% 15 0 134 134.00 0.00% 16 0 140 140.00 0.00% 17 0 119 119.00 0.00% 18 0 170 170.00 0.00% 19 0 137 137.00 0.00% 20 0 135 135.00 0.00% 21 0 143 143.00 0.00% 22 0 148 148.00 0.00% 23 0 137 137.00 0.00% May 31 00 0 139 139.00 0.00% 01 0 149 149.00 0.00% 02 0 133 133.00 0.00% 03 0 153 153.00 0.00% 04 0 142 142.00 0.00% 05 0 154 154.00 0.00% 06 0 41 41.00 0.00% 07 0 50 50.00 0.00% 08 0 50 50.00 0.00% 09 0 58 58.00 0.00% 10 0 56 56.00 0.00% 11 0 49 49.00 0.00% 12 0 40 40.00 0.00% 13 0 46 46.00 0.00% 14 0 41 41.00 0.00% 15 0 83 83.00 0.00% 16 0 40 40.00 0.00% 17 0 58 58.00 0.00% 18 0 41 41.00 0.00% 19 0 53 53.00 0.00% 20 0 47 47.00 0.00% 21 0 37 37.00 0.00% 22 0 56 56.00 0.00% 23 0 51 51.00 0.00% Jun 01 00 0 63 63.00 0.00% 01 0 63 63.00 0.00% 02 0 74 74.00 0.00% 03 0 46 46.00 0.00% 04 0 39 39.00 0.00% 05 0 87 87.00 0.00% 06 0 64 64.00 0.00% 07 0 47 47.00 0.00% 08 0 47 47.00 0.00% 09 0 46 46.00 0.00% 10 0 54 54.00 0.00% 11 0 54 54.00 0.00% 12 0 27 27.00 0.00% 13 0 49 49.00 0.00% 14 0 57 57.00 0.00% 15 0 39 39.00 0.00% 16 0 36 36.00 0.00% 17 0 37 37.00 0.00% 18 0 53 53.00 0.00% 19 0 37 37.00 0.00% 20 0 51 51.00 0.00% 21 0 48 48.00 0.00% 22 0 42 42.00 0.00% 23 0 51 51.00 0.00% Day Hour Count Average / Second May 26 00 86 0.02/s 01 96 0.03/s 02 106 0.03/s 03 89 0.02/s 04 89 0.02/s 05 106 0.03/s 06 91 0.03/s 07 99 0.03/s 08 92 0.03/s 09 86 0.02/s 10 97 0.03/s 11 86 0.02/s 12 93 0.03/s 13 98 0.03/s 14 106 0.03/s 15 87 0.02/s 16 84 0.02/s 17 79 0.02/s 18 88 0.02/s 19 90 0.03/s 20 97 0.03/s 21 87 0.02/s 22 111 0.03/s 23 87 0.02/s May 27 00 95 0.03/s 01 121 0.03/s 02 115 0.03/s 03 100 0.03/s 04 92 0.03/s 05 116 0.03/s 06 86 0.02/s 07 82 0.02/s 08 99 0.03/s 09 96 0.03/s 10 96 0.03/s 11 141 0.04/s 12 102 0.03/s 13 111 0.03/s 14 122 0.03/s 15 89 0.02/s 16 92 0.03/s 17 95 0.03/s 18 90 0.03/s 19 95 0.03/s 20 93 0.03/s 21 87 0.02/s 22 84 0.02/s 23 109 0.03/s May 28 00 93 0.03/s 01 113 0.03/s 02 110 0.03/s 03 89 0.02/s 04 79 0.02/s 05 114 0.03/s 06 94 0.03/s 07 89 0.02/s 08 109 0.03/s 09 100 0.03/s 10 117 0.03/s 11 106 0.03/s 12 298 0.08/s 13 161 0.04/s 14 99 0.03/s 15 107 0.03/s 16 140 0.04/s 17 110 0.03/s 18 108 0.03/s 19 92 0.03/s 20 86 0.02/s 21 84 0.02/s 22 84 0.02/s 23 92 0.03/s May 29 00 135 0.04/s 01 103 0.03/s 02 89 0.02/s 03 121 0.03/s 04 94 0.03/s 05 158 0.04/s 06 100 0.03/s 07 106 0.03/s 08 98 0.03/s 09 93 0.03/s 10 107 0.03/s 11 111 0.03/s 12 83 0.02/s 13 83 0.02/s 14 90 0.03/s 15 92 0.03/s 16 98 0.03/s 17 92 0.03/s 18 101 0.03/s 19 142 0.04/s 20 177 0.05/s 21 192 0.05/s 22 239 0.07/s 23 190 0.05/s May 30 00 94 0.03/s 01 87 0.02/s 02 144 0.04/s 03 177 0.05/s 04 183 0.05/s 05 182 0.05/s 06 182 0.05/s 07 178 0.05/s 08 189 0.05/s 09 188 0.05/s 10 219 0.06/s 11 213 0.06/s 12 173 0.05/s 13 190 0.05/s 14 187 0.05/s 15 181 0.05/s 16 187 0.05/s 17 178 0.05/s 18 183 0.05/s 19 179 0.05/s 20 187 0.05/s 21 204 0.06/s 22 182 0.05/s 23 181 0.05/s May 31 00 186 0.05/s 01 181 0.05/s 02 186 0.05/s 03 196 0.05/s 04 194 0.05/s 05 162 0.04/s 06 87 0.02/s 07 85 0.02/s 08 93 0.03/s 09 365 0.10/s 10 87 0.02/s 11 86 0.02/s 12 81 0.02/s 13 87 0.02/s 14 85 0.02/s 15 127 0.04/s 16 83 0.02/s 17 82 0.02/s 18 103 0.03/s 19 108 0.03/s 20 89 0.02/s 21 82 0.02/s 22 102 0.03/s 23 115 0.03/s Jun 01 00 96 0.03/s 01 81 0.02/s 02 87 0.02/s 03 89 0.02/s 04 90 0.03/s 05 108 0.03/s 06 90 0.03/s 07 98 0.03/s 08 116 0.03/s 09 94 0.03/s 10 111 0.03/s 11 87 0.02/s 12 82 0.02/s 13 91 0.03/s 14 90 0.03/s 15 86 0.02/s 16 108 0.03/s 17 86 0.02/s 18 94 0.03/s 19 89 0.02/s 20 94 0.03/s 21 81 0.02/s 22 114 0.03/s 23 108 0.03/s Day Hour Count Average Duration Average idle time May 26 00 86 29m16s 29m3s 01 96 25m21s 25m19s 02 106 22m27s 22m23s 03 89 26m40s 26m39s 04 89 27m26s 27m25s 05 106 22m33s 22m31s 06 91 24m47s 24m42s 07 99 23m47s 23m46s 08 92 26m2s 26m1s 09 86 27m57s 27m55s 10 97 25m33s 25m29s 11 86 28m27s 28m26s 12 93 26m13s 26m7s 13 98 24m59s 24m58s 14 106 23m5s 23m3s 15 87 26m43s 26m41s 16 84 29m24s 29m23s 17 79 31m9s 31m8s 18 88 27m34s 27m31s 19 90 26m53s 26m49s 20 97 24m44s 24m43s 21 87 25m36s 25m35s 22 111 20m41s 20m40s 23 87 28m4s 28m2s May 27 00 95 25m53s 25m41s 01 121 20m7s 20m6s 02 115 20m55s 20m54s 03 100 24m3s 24m2s 04 92 25m26s 25m25s 05 116 19m41s 19m40s 06 86 28m2s 28m 07 82 29m12s 29m9s 08 99 24m21s 24m19s 09 96 25m31s 25m30s 10 96 26m 25m58s 11 141 17m8s 17m 12 102 24m5s 24m4s 13 111 21m10s 21m10s 14 122 20m29s 20m28s 15 89 26m53s 26m52s 16 88 27m20s 27m19s 17 95 25m18s 25m16s 18 90 27m8s 27m6s 19 95 24m38s 24m38s 20 93 24m59s 24m58s 21 87 26m2s 26m1s 22 84 27m56s 27m53s 23 109 23m46s 23m39s May 28 00 93 25m31s 25m17s 01 113 22m12s 22m10s 02 110 21m14s 21m13s 03 89 26m53s 26m51s 04 79 28m25s 28m24s 05 114 20m52s 20m51s 06 94 25m31s 25m23s 07 89 27m10s 27m10s 08 109 22m32s 22m30s 09 100 24m30s 24m28s 10 117 20m39s 20m38s 11 106 23m18s 23m17s 12 298 8m1s 8m 13 159 46m57s 46m56s 14 99 25m7s 25m3s 15 107 22m 21m58s 16 139 17m26s 17m25s 17 111 21m59s 21m52s 18 108 22m44s 22m42s 19 95 36m57s 36m56s 20 89 39m39s 39m38s 21 84 27m28s 27m27s 22 84 28m51s 28m50s 23 92 27m9s 27m5s May 29 00 135 18m17s 18m8s 01 103 22m31s 22m30s 02 89 25m47s 25m44s 03 121 19m17s 19m16s 04 94 26m1s 26m 05 158 15m 14m59s 06 97 24m2s 24m 07 106 23m19s 23m15s 08 98 24m28s 24m22s 09 93 27m23s 27m22s 10 107 21m57s 21m55s 11 111 22m28s 22m28s 12 83 28m18s 28m14s 13 83 28m43s 28m41s 14 90 27m10s 27m8s 15 92 26m29s 26m29s 16 98 25m2s 25m1s 17 91 25m21s 24m53s 18 101 25m 24m27s 19 142 17m8s 16m53s 20 177 14m36s 13m49s 21 191 55m2s 54m33s 22 239 10m26s 10m10s 23 191 13m5s 12m44s May 30 00 94 26m16s 25m46s 01 87 26m3s 24m53s 02 143 16m31s 16m19s 03 177 13m59s 12m59s 04 184 13m21s 13m3s 05 181 13m18s 12m22s 06 183 15m27s 14m54s 07 179 13m50s 13m31s 08 189 13m7s 12m47s 09 187 13m7s 12m48s 10 216 10m58s 10m40s 11 214 12m16s 11m59s 12 173 14m6s 13m29s 13 188 13m8s 12m48s 14 188 13m8s 12m49s 15 180 13m48s 13m29s 16 188 13m1s 12m43s 17 181 19m57s 19m38s 18 183 13m22s 13m1s 19 183 49m52s 49m33s 20 186 13m2s 12m43s 21 204 11m49s 11m32s 22 183 13m34s 13m12s 23 181 13m28s 13m9s May 31 00 186 13m40s 13m16s 01 180 12m36s 12m16s 02 187 13m4s 12m46s 03 196 12m7s 11m49s 04 193 12m44s 12m26s 05 162 14m4s 13m50s 06 88 26m39s 26m26s 07 85 28m42s 28m41s 08 92 26m58s 26m57s 09 366 7m43s 7m42s 10 87 27m14s 27m11s 11 86 27m13s 27m12s 12 81 30m6s 30m5s 13 87 27m51s 27m50s 14 85 28m56s 28m54s 15 127 18m11s 18m9s 16 83 29m21s 29m20s 17 82 29m58s 29m57s 18 103 23m47s 23m46s 19 108 22m51s 22m50s 20 89 25m40s 25m39s 21 82 28m41s 28m41s 22 102 23m25s 23m24s 23 115 21m24s 21m23s Jun 01 00 96 25m29s 25m18s 01 81 29m27s 29m25s 02 87 26m12s 26m10s 03 89 26m32s 26m31s 04 90 24m41s 24m41s 05 108 21m30s 21m29s 06 90 27m15s 27m13s 07 98 24m39s 24m36s 08 116 21m28s 21m27s 09 94 25m15s 25m14s 10 111 21m35s 21m34s 11 87 27m40s 27m39s 12 82 29m38s 29m37s 13 91 26m53s 26m52s 14 89 27m32s 27m30s 15 87 27m15s 27m10s 16 108 23m19s 23m18s 17 86 27m31s 27m30s 18 93 26m18s 26m12s 19 90 28m15s 27m22s 20 94 25m56s 25m55s 21 81 26m26s 26m25s 22 114 22m31s 22m30s 23 108 22m24s 22m23s -
Connections
Established Connections
Key values
- 37 connections Connection Peak
- 2024-05-31 09:24:06 Date
Connections per database
Key values
- ctdprd51 Main Database
- 19,776 connections Total
Connections per user
Key values
- pubeu Main User
- 19,776 connections Total
-
Sessions
Simultaneous sessions
Key values
- 104 sessions Session Peak
- 2024-05-30 03:02:24 Date
Histogram of session times
Key values
- 11,954 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 19,776 sessions Total
Sessions per user
Key values
- pubeu Main User
- 19,776 sessions Total
User Count Total Duration Average Duration edit 11 3d23h18m36s 8h39m52s editeu 2,598 56d2h20m24s 31m5s load 165 2d20h23s 24m43s postgres 51 2h9m28s 2m32s pub1 28 1d18h50m 1h31m47s pub2 2 30s429ms 15s214ms pubc 14 2d17h20m56s 4h40m4s pubeu 11,563 113d1h58m53s 14m4s qaeu 5,343 112d2h28m29s 30m12s zbx_monitor 1 5d15h44m25s 5d15h44m25s Sessions per host
Key values
- 10.12.5.37 Main Host
- 19,776 sessions Total
Host Count Total Duration Average Duration 10.12.5.36 38 2h28s 3m10s 10.12.5.37 8,941 57d3h31m40s 9m12s 10.12.5.38 2,632 56d19m33s 30m38s 10.12.5.39 2,597 56d2h20m24s 31m6s 10.12.5.40 169 14h23m2s 5m6s 10.12.5.45 2,691 55d23h53m42s 29m57s 10.12.5.46 2,634 56d37m32s 30m37s 192.168.201.14 15 5d5h16m38s 8h21m6s 192.168.201.6 7 5d9h55m11s 18h33m35s ::1 52 5d17h53m54s 2h39m6s -
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 4,930,288 buffers Checkpoint Peak
- 2024-05-29 23:53:53 Date
- 1619.997 seconds Highest write time
- 0.927 seconds Sync time
Checkpoints Wal files
Key values
- 975 files Wal files usage Peak
- 2024-05-30 03:30:33 Date
Checkpoints distance
Key values
- 18,692.72 Mo Distance Peak
- 2024-05-29 23:31:52 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time May 26 00 9,966 1,066.092s 0.005s 1,066.25s 01 270 27.242s 0.002s 27.275s 02 328 32.966s 0.002s 32.997s 03 324 32.653s 0.002s 32.692s 04 320 32.265s 0.002s 32.295s 05 6,922 693.386s 0.003s 693.536s 06 2,488 249.28s 0.002s 249.361s 07 343 34.459s 0.001s 34.474s 08 18,063 1,671.903s 0.004s 1,672.121s 09 627 63.025s 0.002s 63.055s 10 599 60.105s 0.003s 60.137s 11 384 38.661s 0.002s 38.738s 12 397 39.967s 0.002s 39.997s 13 381 38.267s 0.002s 38.297s 14 322 32.439s 0.003s 32.469s 15 557 55.997s 0.002s 56.027s 16 4,895 490.263s 0.003s 490.332s 17 510 51.317s 0.002s 51.348s 18 460 46.173s 0.002s 46.205s 19 347 34.953s 0.002s 34.985s 20 5,606 561.644s 0.005s 561.806s 21 9,429 944.715s 0.002s 944.746s 22 6,192 620.375s 0.002s 620.492s 23 9,311 932.65s 0.003s 932.79s May 27 00 3,039 320.236s 0.002s 320.282s 01 274 27.658s 0.002s 27.688s 02 373 37.567s 0.002s 37.598s 03 6,167 617.704s 0.003s 617.821s 04 393 39.566s 0.002s 39.596s 05 3,704 371.097s 0.003s 371.179s 06 3,712 371.938s 0.003s 372.065s 07 1,749 175.427s 0.003s 175.458s 08 4,724 473.227s 0.002s 473.284s 09 63,541 2,093.098s 0.004s 2,093.682s 10 510 51.292s 0.003s 51.322s 11 384 38.573s 0.003s 38.604s 12 394 39.684s 0.003s 39.718s 13 2,019 202.687s 0.004s 202.767s 14 540 54.195s 0.003s 54.226s 15 6,858 687.046s 0.004s 687.197s 16 391 39.306s 0.007s 39.453s 17 2,133 213.889s 0.004s 213.921s 18 373 37.561s 0.002s 37.638s 19 504 50.624s 0.002s 50.653s 20 4,405 441.52s 0.002s 441.609s 21 571 57.282s 0.002s 57.312s 22 436 43.862s 0.002s 43.893s 23 50,591 1,641.448s 0.002s 1,641.917s May 28 00 1,997 223.002s 0.004s 223.047s 01 6,788 679.912s 0.003s 680.013s 02 321 32.349s 0.002s 32.38s 03 321 32.255s 0.002s 32.287s 04 170 17.142s 0.001s 17.204s 05 50,309 1,669.491s 0.005s 1,669.966s 06 70,290 1,646.855s 0.004s 1,647.422s 07 665 66.62s 0.003s 66.652s 08 374 37.663s 0.002s 37.693s 09 1,027 102.998s 0.002s 103.029s 10 7,477 748.925s 0.004s 749.05s 11 694 69.674s 0.003s 69.705s 12 515 51.813s 0.003s 51.844s 13 223 22.437s 0.001s 22.452s 14 36,961 1,936.5s 0.17s 1,937.127s 15 471 47.369s 0.003s 47.402s 16 250 25.141s 0.002s 25.157s 17 254,196 1,834.437s 0.669s 1,852.065s 18 429 43.169s 0.003s 43.343s 19 687 69.02s 0.002s 69.05s 20 431 43.255s 0.003s 43.286s 21 540 54.292s 0.002s 54.322s 22 32,016 1,630.984s 0.003s 1,631.091s 23 590 59.302s 0.002s 59.333s May 29 00 2,438 244.511s 0.004s 244.591s 01 313 31.549s 0.003s 31.58s 02 395 39.769s 0.004s 39.803s 03 59,154 1,643.249s 0.003s 1,643.436s 04 56,046 1,696.599s 0.003s 1,696.78s 05 5,046 505.508s 0.003s 505.592s 06 7,207 722.019s 0.003s 722.097s 07 671 67.458s 0.004s 67.533s 08 1,324 132.731s 0.01s 140.236s 09 23,641 1,673.796s 0.008s 1,678.354s 10 949 95.279s 0.003s 95.434s 11 526 52.794s 0.002s 52.825s 12 33,127 1,634.973s 0.003s 1,640.07s 13 494 49.571s 0.002s 49.709s 14 6,834 684.503s 0.003s 684.633s 15 328 33.075s 0.002s 33.118s 16 481 48.282s 0.003s 48.377s 17 1,782,505 956.598s 0.485s 977.823s 18 1,463,683 3,238.948s 0.042s 3,250.147s 19 32,036 1,670.925s 0.006s 1,671.189s 20 217 21.829s 0.002s 21.844s 21 3,742,423 482.579s 1.508s 520.808s 22 666,507 1,629.219s 0.013s 1,635.846s 23 8,807,658 3,125.137s 0.972s 3,154.676s May 30 00 1,688,031 1,443.065s 0.851s 1,464.248s 01 1,152,261 1,661.452s 0.005s 1,667.551s 02 322,306 1,619.997s 0.006s 1,622.675s 03 651,011 2,162.283s 3.64s 2,323.343s 04 471,439 1,619.356s 0.008s 1,626.511s 05 180,325 3,667.716s 0.059s 3,669.762s 06 1,162,698 3,238.868s 0.004s 3,249.824s 07 3,290 329.688s 0.003s 329.718s 08 1,701 170.829s 0.005s 170.878s 09 1,733 173.728s 0.002s 173.748s 10 25,864 1,656.295s 0.003s 1,656.432s 11 21,620 1,741.429s 0.004s 1,741.804s 12 662 66.604s 0.015s 66.648s 13 305 30.662s 0.002s 30.677s 14 3,161 316.975s 0.006s 317.069s 15 1,093 109.709s 0.003s 109.741s 16 666 66.856s 0.002s 66.93s 17 456 45.898s 0.002s 45.929s 18 778 78.038s 0.004s 78.071s 19 912 91.592s 0.003s 91.623s 20 979 98.292s 0.003s 98.322s 21 256 25.746s 0.002s 25.763s 22 51,121 1,680.414s 0.004s 1,680.616s 23 272 27.359s 0.001s 27.416s May 31 00 55,268 1,859.079s 0.018s 1,859.342s 01 762 76.499s 0.002s 76.529s 02 603 60.634s 0.002s 60.663s 03 633 63.551s 0.003s 63.582s 04 781 78.35s 0.002s 78.366s 05 79,252 3,239.065s 0.004s 3,239.349s 06 20,097 2,013.062s 0.005s 2,013.169s 07 1,154 115.824s 0.002s 115.912s 08 50,689 1,630.958s 0.003s 1,631.14s 09 823 82.605s 0.003s 82.688s 10 677 68.01s 0.003s 68.04s 11 397 39.869s 0.002s 39.899s 12 2,363 236.908s 0.003s 236.988s 13 613 61.516s 0.002s 61.548s 14 698 70.142s 0.003s 70.175s 15 1,187 118.94s 0.001s 119.002s 16 2,295 230.011s 0.004s 230.043s 17 3,438 344.605s 0.004s 344.687s 18 2,255 226.282s 0.004s 226.314s 19 1,774 177.92s 0.004s 177.952s 20 1,293 129.757s 0.004s 129.838s 21 2,137 214.289s 0.005s 214.337s 22 622 62.431s 0.002s 62.446s 23 1,349 135.236s 0.003s 135.268s Jun 01 00 3,183 319.164s 0.006s 319.356s 01 408 40.978s 0.002s 40.994s 02 1,500 150.365s 0.003s 150.396s 03 1,599 160.501s 0.003s 160.548s 04 48,668 1,619.587s 0.002s 1,619.748s 05 1,756 176.215s 0.005s 176.264s 06 855 85.774s 0.002s 85.807s 07 856 85.955s 0.003s 86.044s 08 977 98.069s 0.002s 98.098s 09 900 90.276s 0.003s 90.309s 10 1,087 109.108s 0.003s 109.138s 11 638 64.114s 0.003s 64.146s 12 747 75.066s 0.002s 75.096s 13 753 75.541s 0.004s 75.573s 14 888 89.193s 0.003s 89.225s 15 759 76.228s 0.003s 76.309s 16 628 63.126s 0.002s 63.157s 17 1,731 173.427s 0.003s 173.459s 18 671 67.95s 0.004s 67.981s 19 5,256 533.75s 0.001s 533.825s 20 65,242 1,693.99s 0.005s 1,694.037s 21 6,619 663.242s 0.003s 663.332s 22 754 75.76s 0.004s 75.792s 23 1,026 102.882s 0.003s 102.914s Day Hour Added Removed Recycled Synced files Longest sync Average sync May 26 00 0 0 4 96 0.001s 0.002s 01 0 0 0 35 0.001s 0.002s 02 0 0 0 34 0.001s 0.002s 03 0 0 0 36 0.001s 0.002s 04 0 0 0 34 0.001s 0.002s 05 0 0 4 65 0.002s 0.002s 06 0 0 1 45 0.001s 0.002s 07 0 0 0 60 0.001s 0.001s 08 0 0 11 198 0.001s 0.003s 09 0 0 0 121 0.001s 0.002s 10 0 0 0 74 0.001s 0.002s 11 0 0 1 27 0.001s 0.002s 12 0 0 0 27 0.001s 0.002s 13 0 0 0 27 0.001s 0.002s 14 0 0 0 21 0.001s 0.002s 15 0 0 0 28 0.001s 0.002s 16 0 0 3 30 0.001s 0.002s 17 0 0 0 27 0.001s 0.002s 18 0 0 0 27 0.001s 0.002s 19 0 0 0 18 0.001s 0.002s 20 0 0 8 43 0.001s 0.002s 21 0 0 0 40 0.001s 0.002s 22 0 0 4 52 0.001s 0.002s 23 0 0 6 38 0.001s 0.002s May 27 00 0 0 1 76 0.001s 0.002s 01 0 0 0 33 0.001s 0.002s 02 0 0 0 44 0.001s 0.002s 03 0 0 4 46 0.001s 0.002s 04 0 0 0 30 0.001s 0.002s 05 0 0 1 49 0.001s 0.002s 06 0 0 2 105 0.001s 0.002s 07 0 0 0 144 0.001s 0.002s 08 0 0 3 67 0.001s 0.001s 09 0 0 42 110 0.001s 0.003s 10 0 0 0 31 0.001s 0.002s 11 0 0 0 26 0.002s 0.002s 12 0 0 0 24 0.001s 0.002s 13 0 0 1 43 0.001s 0.002s 14 0 0 0 79 0.001s 0.002s 15 0 0 4 101 0.001s 0.002s 16 0 0 1 76 0.001s 0.002s 17 0 0 0 46 0.001s 0.002s 18 0 0 1 26 0.001s 0.002s 19 0 0 0 28 0.001s 0.002s 20 0 0 2 31 0.001s 0.002s 21 0 0 0 28 0.001s 0.002s 22 0 0 0 17 0.001s 0.002s 23 0 0 34 39 0.001s 0.002s May 28 00 0 0 1 75 0.001s 0.002s 01 0 0 3 54 0.001s 0.002s 02 0 0 0 31 0.001s 0.002s 03 0 0 0 33 0.001s 0.002s 04 0 0 1 17 0.001s 0.001s 05 0 0 33 115 0.001s 0.003s 06 0 0 43 155 0.001s 0.002s 07 0 0 0 126 0.001s 0.002s 08 0 0 0 33 0.001s 0.002s 09 0 0 0 45 0.001s 0.002s 10 0 0 5 139 0.001s 0.002s 11 0 0 0 123 0.001s 0.002s 12 0 0 0 73 0.001s 0.002s 13 0 0 0 52 0.001s 0.001s 14 0 0 23 890 0.002s 0.003s 15 0 0 0 29 0.001s 0.002s 16 0 0 0 51 0.001s 0.001s 17 0 172 1,286 422 0.382s 0.008s 18 0 1 0 40 0.002s 0.002s 19 0 0 0 27 0.001s 0.002s 20 0 0 0 20 0.001s 0.002s 21 0 0 0 26 0.001s 0.002s 22 0 3 0 38 0.001s 0.002s 23 0 0 0 32 0.001s 0.002s May 29 00 0 1 0 83 0.001s 0.002s 01 0 0 0 34 0.001s 0.002s 02 0 0 0 37 0.001s 0.002s 03 0 39 0 55 0.001s 0.002s 04 0 38 0 61 0.001s 0.002s 05 0 3 0 55 0.001s 0.002s 06 0 3 0 90 0.001s 0.002s 07 0 1 0 160 0.001s 0.002s 08 0 0 570 156 0.001s 0.002s 09 0 0 367 197 0.001s 0.003s 10 0 1 0 105 0.001s 0.002s 11 0 0 0 116 0.001s 0.002s 12 0 16 406 114 0.001s 0.002s 13 0 1 0 23 0.001s 0.002s 14 0 3 0 57 0.001s 0.002s 15 0 0 0 17 0.001s 0.002s 16 0 1 0 28 0.001s 0.002s 17 0 31 1,615 247 0.101s 0.008s 18 0 0 917 413 0.001s 0.002s 19 0 1 0 73 0.002s 0.003s 20 0 0 0 11 0.001s 0.001s 21 0 35 2,605 184 0.845s 0.043s 22 0 0 545 95 0.002s 0.002s 23 0 546 1,953 500 0.803s 0.022s May 30 00 0 4 1,610 254 0.599s 0.01s 01 0 0 498 138 0.001s 0.003s 02 0 108 184 71 0.002s 0.001s 03 0 698 10,739 1,039 0.917s 0.068s 04 0 0 589 146 0.001s 0.001s 05 0 51 112 158 0.030s 0.003s 06 0 0 896 247 0.001s 0.002s 07 0 0 0 155 0.001s 0.002s 08 0 0 0 209 0.001s 0.003s 09 0 1 0 30 0.001s 0.001s 10 0 10 0 72 0.001s 0.002s 11 0 10 0 143 0.002s 0.003s 12 0 0 0 36 0.014s 0.003s 13 0 0 0 54 0.001s 0.001s 14 0 1 0 301 0.002s 0.003s 15 0 0 0 121 0.001s 0.002s 16 0 1 0 32 0.001s 0.002s 17 0 0 0 27 0.001s 0.002s 18 0 0 0 32 0.002s 0.002s 19 0 0 0 36 0.001s 0.002s 20 0 0 0 29 0.001s 0.002s 21 0 0 0 11 0.001s 0.001s 22 0 35 0 61 0.001s 0.003s 23 0 1 0 11 0.001s 0.001s May 31 00 0 36 0 100 0.011s 0.003s 01 0 0 0 38 0.001s 0.002s 02 0 0 0 39 0.001s 0.002s 03 0 0 0 40 0.001s 0.002s 04 0 0 0 25 0.001s 0.001s 05 0 54 0 77 0.001s 0.002s 06 0 3 0 142 0.001s 0.003s 07 0 1 0 151 0.001s 0.002s 08 0 33 0 115 0.001s 0.002s 09 0 1 0 37 0.001s 0.002s 10 0 0 0 110 0.001s 0.002s 11 0 0 0 26 0.001s 0.002s 12 0 1 0 125 0.001s 0.002s 13 0 0 0 84 0.001s 0.002s 14 0 0 0 67 0.001s 0.002s 15 0 1 0 37 0.001s 0.001s 16 0 0 0 124 0.001s 0.002s 17 0 1 0 127 0.001s 0.002s 18 0 0 0 46 0.001s 0.002s 19 0 0 0 36 0.001s 0.002s 20 0 1 0 25 0.001s 0.002s 21 0 0 0 65 0.001s 0.003s 22 0 0 0 13 0.001s 0.001s 23 0 0 0 24 0.001s 0.002s Jun 01 00 0 2 0 110 0.001s 0.003s 01 0 0 0 20 0.001s 0.001s 02 0 0 0 47 0.001s 0.002s 03 0 0 0 53 0.001s 0.003s 04 0 33 0 30 0.001s 0.001s 05 0 0 0 69 0.001s 0.003s 06 0 0 0 33 0.001s 0.002s 07 0 1 0 30 0.001s 0.002s 08 0 0 0 29 0.001s 0.002s 09 0 0 0 28 0.001s 0.002s 10 0 0 0 38 0.001s 0.002s 11 0 0 0 23 0.001s 0.002s 12 0 0 0 27 0.001s 0.002s 13 0 0 0 22 0.001s 0.002s 14 0 0 0 26 0.001s 0.002s 15 0 1 0 22 0.001s 0.002s 16 0 0 0 21 0.001s 0.002s 17 0 0 0 27 0.001s 0.002s 18 0 0 0 26 0.002s 0.002s 19 0 3 0 20 0.001s 0.001s 20 0 0 0 43 0.001s 0.003s 21 0 3 0 36 0.001s 0.002s 22 0 0 0 28 0.001s 0.002s 23 0 0 0 23 0.001s 0.002s Day Hour Count Avg time (sec) May 26 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s May 27 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s May 28 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s May 29 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s May 30 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s May 31 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Jun 01 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate May 26 00 51,850.00 kB 96,161.50 kB 01 735.50 kB 78,111.50 kB 02 835.00 kB 63,421.00 kB 03 970.50 kB 51,562.50 kB 04 867.00 kB 41,930.00 kB 05 33,030.50 kB 48,379.50 kB 06 7,156.00 kB 52,406.00 kB 07 1,380.00 kB 45,450.00 kB 08 58,934.33 kB 156,743.67 kB 09 2,010.50 kB 120,617.50 kB 10 1,494.00 kB 98,030.50 kB 11 1,080.00 kB 79,620.50 kB 12 1,064.00 kB 64,690.50 kB 13 997.00 kB 52,575.50 kB 14 900.00 kB 42,768.50 kB 15 1,352.50 kB 34,898.00 kB 16 23,976.00 kB 44,715.50 kB 17 1,281.00 kB 36,461.00 kB 18 1,230.50 kB 29,749.50 kB 19 942.50 kB 24,295.00 kB 20 26,025.00 kB 35,907.00 kB 21 39,601.50 kB 74,188.00 kB 22 30,682.50 kB 63,277.50 kB 23 45,151.00 kB 84,682.00 kB May 27 00 7,477.00 kB 69,948.00 kB 01 747.50 kB 56,887.00 kB 02 951.50 kB 46,251.50 kB 03 31,071.50 kB 50,375.00 kB 04 1,069.00 kB 52,450.00 kB 05 12,181.00 kB 44,790.00 kB 06 11,017.50 kB 38,269.50 kB 07 5,601.50 kB 32,147.00 kB 08 47,117.00 kB 47,117.00 kB 09 229,222.67 kB 581,134.33 kB 10 1,191.50 kB 447,102.00 kB 11 1,042.00 kB 362,359.50 kB 12 1,041.00 kB 293,685.00 kB 13 6,440.50 kB 238,722.00 kB 14 1,559.00 kB 194,024.50 kB 15 32,789.00 kB 160,796.00 kB 16 1,271.00 kB 133,090.50 kB 17 6,643.00 kB 108,753.00 kB 18 1,035.50 kB 88,622.50 kB 19 1,281.50 kB 72,007.00 kB 20 16,165.50 kB 60,059.00 kB 21 1,458.00 kB 50,255.50 kB 22 1,182.50 kB 40,950.00 kB 23 276,163.50 kB 523,267.00 kB May 28 00 7,432.50 kB 425,224.50 kB 01 30,075.50 kB 350,216.00 kB 02 807.00 kB 283,823.50 kB 03 888.00 kB 230,069.00 kB 04 939.00 kB 196,298.00 kB 05 181,626.00 kB 489,269.00 kB 06 352,238.50 kB 667,482.50 kB 07 1,738.50 kB 541,015.00 kB 08 1,009.00 kB 438,442.50 kB 09 2,878.50 kB 355,516.00 kB 10 35,147.50 kB 294,763.00 kB 11 2,048.00 kB 239,179.50 kB 12 1,498.50 kB 194,018.00 kB 13 1,273.00 kB 165,614.00 kB 14 125,152.00 kB 322,146.67 kB 15 1,255.50 kB 247,850.50 kB 16 1,396.00 kB 211,534.00 kB 17 5,971,938.25 kB 7,059,686.50 kB 18 1,036.00 kB 7,129,990.50 kB 19 1,318.00 kB 5,775,516.00 kB 20 1,155.50 kB 4,678,409.00 kB 21 1,294.00 kB 3,789,740.50 kB 22 25,183.50 kB 3,074,485.50 kB 23 1,510.50 kB 2,490,597.50 kB May 29 00 7,904.00 kB 2,018,838.00 kB 01 816.50 kB 1,635,505.00 kB 02 924.50 kB 1,324,927.50 kB 03 319,621.00 kB 1,133,902.00 kB 04 304,397.50 kB 976,141.00 kB 05 23,322.50 kB 793,279.50 kB 06 32,873.50 kB 650,798.00 kB 07 1,862.50 kB 527,463.00 kB 08 4,409,018.50 kB 4,633,235.00 kB 09 2,180,678.33 kB 7,758,636.00 kB 10 2,432.00 kB 5,948,685.00 kB 11 1,435.00 kB 4,818,822.00 kB 12 3,463,403.00 kB 6,579,310.00 kB 13 1,106.50 kB 5,329,448.50 kB 14 30,896.00 kB 4,322,740.00 kB 15 974.00 kB 3,501,603.50 kB 16 1,230.50 kB 2,836,530.50 kB 17 8,816,666.00 kB 8,816,666.00 kB 18 7,777,019.50 kB 8,714,244.00 kB 19 1,535.33 kB 7,000,693.33 kB 20 1,250.00 kB 5,649,877.00 kB 21 7,350,357.67 kB 8,203,677.33 kB 22 4,045,402.50 kB 8,315,037.00 kB 23 8,082,109.40 kB 9,011,947.80 kB May 30 00 8,818,130.00 kB 9,368,053.33 kB 01 2,891,070.33 kB 8,353,901.67 kB 02 4,258,507.00 kB 7,167,610.00 kB 03 8,556,002.82 kB 8,847,383.73 kB 04 8,799,057.00 kB 8,985,133.00 kB 05 891,118.00 kB 7,523,154.00 kB 06 7,592,479.00 kB 8,692,119.50 kB 07 11,104.00 kB 7,329,340.00 kB 08 2,309.67 kB 5,645,688.00 kB 09 12,993.00 kB 4,557,582.00 kB 10 79,980.00 kB 3,911,874.00 kB 11 54,598.67 kB 3,027,581.67 kB 12 1,116.00 kB 2,321,525.00 kB 13 1,281.00 kB 1,979,596.00 kB 14 5,769.33 kB 1,610,866.33 kB 15 1,536.50 kB 1,235,340.00 kB 16 1,482.00 kB 1,000,903.50 kB 17 1,045.00 kB 810,944.50 kB 18 1,416.50 kB 657,124.00 kB 19 1,800.50 kB 532,575.50 kB 20 1,508.50 kB 431,691.00 kB 21 1,578.00 kB 368,307.00 kB 22 192,067.67 kB 517,385.00 kB 23 1,771.00 kB 417,877.00 kB May 31 00 197,460.33 kB 516,462.33 kB 01 897.50 kB 396,733.50 kB 02 994.50 kB 321,544.50 kB 03 941.00 kB 260,632.00 kB 04 2,719.00 kB 222,537.00 kB 05 421,801.00 kB 590,725.50 kB 06 30,778.33 kB 471,951.00 kB 07 3,050.50 kB 363,692.00 kB 08 276,038.00 kB 523,702.00 kB 09 1,061.50 kB 424,389.50 kB 10 1,593.50 kB 344,035.50 kB 11 868.50 kB 278,869.00 kB 12 9,840.50 kB 227,721.50 kB 13 1,469.00 kB 184,742.00 kB 14 1,350.50 kB 149,900.00 kB 15 1,925.00 kB 128,063.00 kB 16 1,617.50 kB 109,731.00 kB 17 10,942.00 kB 90,121.50 kB 18 1,471.00 kB 74,126.50 kB 19 1,684.50 kB 60,341.00 kB 20 1,445.50 kB 49,175.50 kB 21 1,963.00 kB 38,332.33 kB 22 1,558.00 kB 31,235.00 kB 23 1,529.50 kB 26,931.00 kB Jun 01 00 6,850.33 kB 22,182.00 kB 01 788.00 kB 18,510.00 kB 02 3,863.50 kB 16,512.50 kB 03 908.67 kB 12,946.00 kB 04 536,708.00 kB 536,708.00 kB 05 2,100.33 kB 436,790.00 kB 06 989.00 kB 335,125.50 kB 07 902.00 kB 271,635.00 kB 08 935.50 kB 220,199.50 kB 09 971.50 kB 178,544.50 kB 10 1,337.00 kB 144,855.50 kB 11 742.00 kB 117,512.00 kB 12 985.00 kB 95,352.00 kB 13 869.50 kB 77,414.50 kB 14 1,056.00 kB 62,911.00 kB 15 778.00 kB 51,101.00 kB 16 810.50 kB 41,554.00 kB 17 1,201.00 kB 33,893.00 kB 18 787.50 kB 27,593.00 kB 19 56,000.00 kB 56,000.00 kB 20 1,092.00 kB 45,728.67 kB 21 21,944.00 kB 40,829.50 kB 22 1,187.00 kB 33,296.50 kB 23 1,386.50 kB 27,223.00 kB -
Temporary Files
Size of temporary files
Key values
- 15.00 GiB Temp Files size Peak
- 2024-05-29 20:50:56 Date
Number of temporary files
Key values
- 18 per second Temp Files Peak
- 2024-05-30 03:19:19 Date
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size May 26 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 May 27 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 May 28 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 6 5.82 GiB 993.56 MiB 15 0 0 0 16 240 2.14 GiB 9.11 MiB 17 566 22.61 GiB 40.90 MiB 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 May 29 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 202 17.69 GiB 89.69 MiB 09 0 0 0 10 0 0 0 11 0 0 0 12 115 5.11 GiB 45.54 MiB 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 25 24.05 GiB 985.17 MiB 20 117 114.24 GiB 999.81 MiB 21 260 102.41 GiB 403.32 MiB 22 175 15.77 GiB 92.27 MiB 23 166 30.62 GiB 188.92 MiB May 30 00 0 0 0 01 0 0 0 02 0 0 0 03 978 150.01 GiB 157.06 MiB 04 0 0 0 05 0 0 0 06 8 7.78 GiB 996.28 MiB 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 40 39.66 GiB 1015.23 MiB 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 May 31 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Jun 01 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Queries generating the most temporary files (N)
Rank Count Total size Min size Max size Avg size Query 1 1,193 66.07 GiB 8.00 KiB 1.00 GiB 56.71 MiB select * from pgbulkload.pg_bulkload (?);-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-05-29 21:01:40 Duration: 6m27s Database: ctdprd51 User: load Application: pg_bulkload
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-05-29 21:29:17 Duration: 5m23s
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-05-28 17:05:46 Duration: 3m48s
2 896 147.35 GiB 128.00 KiB 1.00 GiB 168.40 MiB vacuum full analyze;-
VACUUM FULL ANALYZE;
Date: 2024-05-30 03:58:57 Duration: 46m7s
-
VACUUM FULL ANALYZE;
Date: 2024-05-30 03:20:22 Duration: 0ms
3 65 64.04 GiB 37.40 MiB 1.00 GiB 1008.82 MiB select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.gene_go_annot gga, pub1.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in;-
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in;
Date: 2024-05-29 20:50:55 Duration: 0ms
4 62 1.97 GiB 6.77 MiB 1.00 GiB 32.54 MiB cluster pub1.term;-
CLUSTER pub1.TERM;
Date: 2024-05-30 03:12:12 Duration: 1m
-
CLUSTER pub1.TERM;
Date: 2024-05-30 03:11:22 Duration: 0ms
5 46 45.12 GiB 120.14 MiB 1.00 GiB 1004.35 MiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.object_type where cd = ?), ptr.term_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.phenotype_term_reference ptr, pub1.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;-
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;
Date: 2024-05-29 20:11:02 Duration: 0ms
6 35 3.46 GiB 52.74 MiB 133.49 MiB 101.32 MiB vacuum full analyze db_link;-
vacuum FULL analyze db_link;
Date: 2024-05-29 12:16:47 Duration: 1m32s
-
vacuum FULL analyze db_link;
Date: 2024-05-29 12:15:32 Duration: 0ms
7 35 1.09 GiB 23.73 MiB 47.56 MiB 31.93 MiB vacuum full analyze ixn_actor;-
vacuum FULL analyze ixn_actor;
Date: 2024-05-29 12:14:38 Duration: 22s790ms
-
vacuum FULL analyze ixn_actor;
Date: 2024-05-29 12:14:21 Duration: 0ms
8 25 358.81 MiB 10.45 MiB 18.96 MiB 14.35 MiB vacuum full analyze ixn;-
vacuum FULL analyze ixn;
Date: 2024-05-29 12:14:57 Duration: 7s356ms
-
vacuum FULL analyze ixn;
Date: 2024-05-29 12:14:52 Duration: 0ms
9 25 15.57 GiB 8.00 KiB 1.00 GiB 637.91 MiB alter table pub1.term_enrichment_agent add constraint term_enrichment_agent_pk primary key (term_id, enriched_term_id, agent_term_id);-
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-05-29 23:32:10 Duration: 2m52s
-
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-05-29 23:32:09 Duration: 0ms
10 25 24.05 GiB 53.20 MiB 1.00 GiB 985.17 MiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub1.gene_chem_reference gcr, pub1.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;
Date: 2024-05-29 19:28:32 Duration: 0ms
11 20 214.87 MiB 6.12 MiB 17.12 MiB 10.74 MiB vacuum full analyze term;-
vacuum FULL analyze TERM;
Date: 2024-05-29 12:14:51 Duration: 9s546ms
-
vacuum FULL analyze TERM;
Date: 2024-05-29 12:14:43 Duration: 0ms Database: ctdprd51 User: load Application: pgAdmin 4 - CONN:6440632
12 20 700.86 MiB 20.55 MiB 57.66 MiB 35.04 MiB cluster pub1.term_label;-
CLUSTER pub1.TERM_LABEL;
Date: 2024-05-30 03:12:48 Duration: 35s328ms
-
CLUSTER pub1.TERM_LABEL;
Date: 2024-05-30 03:12:18 Duration: 0ms
13 20 12.18 GiB 8.00 KiB 1.00 GiB 623.85 MiB create unique index gene_disease_reference_ak1 on pub1.gene_disease_reference using btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-05-29 21:05:51 Duration: 3m
-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-05-29 21:05:50 Duration: 0ms Database: ctdprd51 User: pub1
14 15 6.77 GiB 8.00 KiB 1.00 GiB 462.11 MiB alter table pub1.gene_disease_reference add constraint gene_disease_reference_pk primary key (id);-
ALTER TABLE pub1.gene_disease_reference ADD CONSTRAINT gene_disease_reference_pk PRIMARY KEY (id);
Date: 2024-05-29 21:19:50 Duration: 1m4s
-
ALTER TABLE pub1.gene_disease_reference ADD CONSTRAINT gene_disease_reference_pk PRIMARY KEY (id);
Date: 2024-05-29 21:19:50 Duration: 0ms
15 15 11.12 GiB 202.72 MiB 1.00 GiB 759.41 MiB create index ix_term_enrich_agent_enr_term on pub1.term_enrichment_agent using btree (enriched_term_id);-
CREATE INDEX ix_term_enrich_agent_enr_term ON pub1.term_enrichment_agent USING btree (enriched_term_id);
Date: 2024-05-29 23:29:17 Duration: 1m45s
-
CREATE INDEX ix_term_enrich_agent_enr_term ON pub1.term_enrichment_agent USING btree (enriched_term_id);
Date: 2024-05-29 23:29:17 Duration: 0ms
16 10 6.77 GiB 326.88 MiB 1.00 GiB 693.16 MiB create index ix_gene_disease_ref_reference on pub1.gene_disease_reference using btree (reference_id);-
CREATE INDEX ix_gene_disease_ref_reference ON pub1.gene_disease_reference USING btree (reference_id);
Date: 2024-05-29 21:11:48 Duration: 1m18s
-
CREATE INDEX ix_gene_disease_ref_reference ON pub1.gene_disease_reference USING btree (reference_id);
Date: 2024-05-29 21:11:47 Duration: 0ms
17 10 62.48 MiB 8.00 KiB 13.04 MiB 6.25 MiB alter table pub1.phenotype_term add constraint phenotype_term_pk primary key (phenotype_id, term_id);-
ALTER TABLE pub1.phenotype_term ADD CONSTRAINT phenotype_term_pk PRIMARY KEY (phenotype_id, term_id);
Date: 2024-05-29 23:46:21 Duration: 0ms
18 10 6.77 GiB 285.03 MiB 1.00 GiB 693.16 MiB create index ix_gene_disease_ref_disease on pub1.gene_disease_reference using btree (disease_id);-
CREATE INDEX ix_gene_disease_ref_disease ON pub1.gene_disease_reference USING btree (disease_id);
Date: 2024-05-29 21:10:29 Duration: 1m23s
-
CREATE INDEX ix_gene_disease_ref_disease ON pub1.gene_disease_reference USING btree (disease_id);
Date: 2024-05-29 21:10:29 Duration: 0ms
19 10 436.70 MiB 8.00 KiB 89.99 MiB 43.67 MiB create unique index chem_disease_reference_ak1 on pub1.chem_disease_reference using btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);-
CREATE UNIQUE INDEX chem_disease_reference_ak1 ON pub1.chem_disease_reference USING btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);
Date: 2024-05-29 21:21:59 Duration: 6s675ms
-
CREATE UNIQUE INDEX chem_disease_reference_ak1 ON pub1.chem_disease_reference USING btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);
Date: 2024-05-29 21:21:59 Duration: 0ms
20 10 624.20 MiB 8.00 KiB 126.51 MiB 62.42 MiB alter table pub1.gene_disease add constraint gene_disease_pk primary key (gene_id, disease_id);-
ALTER TABLE pub1.gene_disease ADD CONSTRAINT gene_disease_pk PRIMARY KEY (gene_id, disease_id);
Date: 2024-05-29 23:46:19 Duration: 7s116ms
-
ALTER TABLE pub1.gene_disease ADD CONSTRAINT gene_disease_pk PRIMARY KEY (gene_id, disease_id);
Date: 2024-05-29 23:46:18 Duration: 0ms
21 10 6.77 GiB 322.07 MiB 1.00 GiB 693.16 MiB create index ix_gene_disease_ref_net_sc on pub1.gene_disease_reference using btree (network_score);-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub1.gene_disease_reference USING btree (network_score);
Date: 2024-05-29 21:18:45 Duration: 2m23s
-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub1.gene_disease_reference USING btree (network_score);
Date: 2024-05-29 21:18:45 Duration: 0ms
22 10 1001.67 MiB 8.00 KiB 207.09 MiB 100.17 MiB alter table pub1.phenotype_term_reference add constraint phenotype_term_reference_pk primary key (id);-
ALTER TABLE pub1.phenotype_term_reference ADD CONSTRAINT phenotype_term_reference_pk PRIMARY KEY (id);
Date: 2024-05-29 21:21:50 Duration: 10s752ms
-
ALTER TABLE pub1.phenotype_term_reference ADD CONSTRAINT phenotype_term_reference_pk PRIMARY KEY (id);
Date: 2024-05-29 21:21:49 Duration: 0ms
23 10 6.77 GiB 298.69 MiB 1.00 GiB 693.16 MiB create index ix_gene_disease_reference_ixn on pub1.gene_disease_reference using btree (ixn_id);-
CREATE INDEX ix_gene_disease_reference_ixn ON pub1.gene_disease_reference USING btree (ixn_id);
Date: 2024-05-29 21:15:00 Duration: 1m22s
-
CREATE INDEX ix_gene_disease_reference_ixn ON pub1.gene_disease_reference USING btree (ixn_id);
Date: 2024-05-29 21:14:59 Duration: 0ms
24 10 239.68 MiB 8.00 KiB 49.95 MiB 23.97 MiB alter table pub1.chem_disease_reference add constraint chem_disease_reference_pk primary key (id);-
ALTER TABLE pub1.chem_disease_reference ADD CONSTRAINT chem_disease_reference_pk PRIMARY KEY (id);
Date: 2024-05-29 21:21:52 Duration: 2s478ms
-
ALTER TABLE pub1.chem_disease_reference ADD CONSTRAINT chem_disease_reference_pk PRIMARY KEY (id);
Date: 2024-05-29 21:21:52 Duration: 0ms
25 10 6.77 GiB 174.77 MiB 1.00 GiB 693.16 MiB create index ix_gene_disease_ref_source_cd on pub1.gene_disease_reference using btree (source_cd);-
CREATE INDEX ix_gene_disease_ref_source_cd ON pub1.gene_disease_reference USING btree (source_cd);
Date: 2024-05-29 21:07:39 Duration: 58s495ms
-
CREATE INDEX ix_gene_disease_ref_source_cd ON pub1.gene_disease_reference USING btree (source_cd);
Date: 2024-05-29 21:07:38 Duration: 0ms
26 10 155.76 MiB 8.00 KiB 33.75 MiB 15.58 MiB alter table pub1.term_enrichment add constraint term_enrichment_pk primary key (term_id, enriched_term_id);-
ALTER TABLE pub1.term_enrichment ADD CONSTRAINT term_enrichment_pk PRIMARY KEY (term_id, enriched_term_id);
Date: 2024-05-29 23:15:15 Duration: 1s990ms
-
ALTER TABLE pub1.term_enrichment ADD CONSTRAINT term_enrichment_pk PRIMARY KEY (term_id, enriched_term_id);
Date: 2024-05-29 23:15:15 Duration: 0ms
27 10 6.77 GiB 278.23 MiB 1.00 GiB 693.16 MiB create index ix_gene_disease_ref_dis_gene on pub1.gene_disease_reference using btree (disease_id, gene_id);-
CREATE INDEX ix_gene_disease_ref_dis_gene ON pub1.gene_disease_reference USING btree (disease_id, gene_id);
Date: 2024-05-29 21:13:37 Duration: 1m49s
-
CREATE INDEX ix_gene_disease_ref_dis_gene ON pub1.gene_disease_reference USING btree (disease_id, gene_id);
Date: 2024-05-29 21:13:37 Duration: 0ms
28 10 6.77 GiB 297.42 MiB 1.00 GiB 693.16 MiB create index ix_gene_disease_ref_mod_tm on pub1.gene_disease_reference using btree (mod_tm);-
CREATE INDEX ix_gene_disease_ref_mod_tm ON pub1.gene_disease_reference USING btree (mod_tm);
Date: 2024-05-29 21:16:21 Duration: 1m21s
-
CREATE INDEX ix_gene_disease_ref_mod_tm ON pub1.gene_disease_reference USING btree (mod_tm);
Date: 2024-05-29 21:16:21 Duration: 0ms
29 10 6.77 GiB 300.84 MiB 1.00 GiB 693.16 MiB create index ix_gene_disease_ref_chem on pub1.gene_disease_reference using btree (via_chem_id);-
CREATE INDEX ix_gene_disease_ref_chem ON pub1.gene_disease_reference USING btree (via_chem_id);
Date: 2024-05-29 21:09:05 Duration: 1m26s
-
CREATE INDEX ix_gene_disease_ref_chem ON pub1.gene_disease_reference USING btree (via_chem_id);
Date: 2024-05-29 21:09:05 Duration: 0ms
30 10 6.77 GiB 276.34 MiB 1.00 GiB 693.16 MiB create index ix_gene_disease_ref_src_db on pub1.gene_disease_reference using btree (source_acc_db_id);-
CREATE INDEX ix_gene_disease_ref_src_db ON pub1.gene_disease_reference USING btree (source_acc_db_id);
Date: 2024-05-29 21:06:40 Duration: 49s127ms
-
CREATE INDEX ix_gene_disease_ref_src_db ON pub1.gene_disease_reference USING btree (source_acc_db_id);
Date: 2024-05-29 21:06:40 Duration: 0ms
31 8 7.78 GiB 802.20 MiB 1.00 GiB 996.28 MiB select pub1.maint_cached_value_refresh_data_metrics ();-
select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-05-30 06:38:45 Duration: 33m23s
-
select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-05-30 06:34:36 Duration: 0ms
32 8 63.19 MiB 8.00 KiB 16.02 MiB 7.90 MiB alter table pub1.chem_disease add constraint chem_disease_pk primary key (chem_id, disease_id);-
ALTER TABLE pub1.chem_disease ADD CONSTRAINT chem_disease_pk PRIMARY KEY (chem_id, disease_id);
Date: 2024-05-29 23:46:24 Duration: 0ms
33 6 5.08 GiB 83.89 MiB 1.00 GiB 867.32 MiB select distinct ptr.phenotype_id, cdr.disease_id, ( select id from pub1.object_type where cd = ?), cdr.reference_id, ptr.reference_id, cdr.ixn_id, cdr.chem_id, ( select id from pub1.object_type where cd = ?), cdr.mod_tm from pub1.chem_disease_reference cdr, pub1.phenotype_term_reference ptr where cdr.chem_id = ptr.term_id;-
SELECT DISTINCT ptr.phenotype_id, cdr.disease_id, ( select id from pub1.OBJECT_TYPE where cd = 'disease'), cdr.reference_id, ptr.reference_id, cdr.ixn_id, cdr.chem_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), cdr.mod_tm FROM pub1.CHEM_DISEASE_REFERENCE cdr, pub1.PHENOTYPE_TERM_REFERENCE ptr WHERE cdr.chem_id = ptr.term_id;
Date: 2024-05-29 20:54:22 Duration: 0ms
34 6 5.82 GiB 841.38 MiB 1.00 GiB 993.56 MiB select distinct ;-
select distinct ;
Date: 2024-05-28 14:32:59 Duration: 0ms
35 5 239.64 MiB 46.64 MiB 50.81 MiB 47.93 MiB create index ix_chem_disease_reference_ref on pub1.chem_disease_reference using btree (reference_id);-
CREATE INDEX ix_chem_disease_reference_ref ON pub1.chem_disease_reference USING btree (reference_id);
Date: 2024-05-29 21:22:05 Duration: 2s866ms
-
CREATE INDEX ix_chem_disease_reference_ref ON pub1.chem_disease_reference USING btree (reference_id);
Date: 2024-05-29 21:22:05 Duration: 0ms
36 5 1001.63 MiB 186.32 MiB 208.44 MiB 200.33 MiB create index ix_phenotype_term_ref_via_term_id on pub1.phenotype_term_reference using btree (via_term_id);-
CREATE INDEX ix_phenotype_term_ref_via_term_id ON pub1.phenotype_term_reference USING btree (via_term_id);
Date: 2024-05-29 21:21:25 Duration: 11s708ms
-
CREATE INDEX ix_phenotype_term_ref_via_term_id ON pub1.phenotype_term_reference USING btree (via_term_id);
Date: 2024-05-29 21:21:25 Duration: 0ms
37 5 217.43 MiB 39.38 MiB 46.75 MiB 43.49 MiB create index ix_term_enrich_corr_p_val on pub1.term_enrichment using btree (corrected_p_val);-
CREATE INDEX ix_term_enrich_corr_p_val ON pub1.term_enrichment USING btree (corrected_p_val);
Date: 2024-05-29 23:15:08 Duration: 4s663ms
-
CREATE INDEX ix_term_enrich_corr_p_val ON pub1.term_enrichment USING btree (corrected_p_val);
Date: 2024-05-29 23:15:08 Duration: 0ms
38 5 155.72 MiB 28.72 MiB 32.93 MiB 31.14 MiB create index ix_term_enrich_enr_obj_type on pub1.term_enrichment using btree (enriched_object_type_id);-
CREATE INDEX ix_term_enrich_enr_obj_type ON pub1.term_enrichment USING btree (enriched_object_type_id);
Date: 2024-05-29 23:15:04 Duration: 1s152ms
-
CREATE INDEX ix_term_enrich_enr_obj_type ON pub1.term_enrichment USING btree (enriched_object_type_id);
Date: 2024-05-29 23:15:04 Duration: 0ms
39 5 1001.63 MiB 197.06 MiB 202.52 MiB 200.33 MiB create index ix_phenotype_term_ref_evidence_cd on pub1.phenotype_term_reference using btree (evidence_cd);-
CREATE INDEX ix_phenotype_term_ref_evidence_cd ON pub1.phenotype_term_reference USING btree (evidence_cd);
Date: 2024-05-29 21:20:45 Duration: 8s890ms
-
CREATE INDEX ix_phenotype_term_ref_evidence_cd ON pub1.phenotype_term_reference USING btree (evidence_cd);
Date: 2024-05-29 21:20:45 Duration: 0ms
40 5 1001.63 MiB 194.12 MiB 210.35 MiB 200.33 MiB create index ix_phenotype_term_ref_object_type_id on pub1.phenotype_term_reference using btree (term_object_type_id);-
CREATE INDEX ix_phenotype_term_ref_object_type_id ON pub1.phenotype_term_reference USING btree (term_object_type_id);
Date: 2024-05-29 21:20:19 Duration: 8s517ms
-
CREATE INDEX ix_phenotype_term_ref_object_type_id ON pub1.phenotype_term_reference USING btree (term_object_type_id);
Date: 2024-05-29 21:20:19 Duration: 0ms
41 5 1001.63 MiB 172.98 MiB 215.42 MiB 200.33 MiB create index ix_phenotype_term_ref_term_id on pub1.phenotype_term_reference using btree (term_id);-
CREATE INDEX ix_phenotype_term_ref_term_id ON pub1.phenotype_term_reference USING btree (term_id);
Date: 2024-05-29 21:20:10 Duration: 9s642ms
-
CREATE INDEX ix_phenotype_term_ref_term_id ON pub1.phenotype_term_reference USING btree (term_id);
Date: 2024-05-29 21:20:10 Duration: 0ms
42 5 1001.63 MiB 193.17 MiB 207.95 MiB 200.33 MiB create index ix_phenotype_term_reference_ixn_id on pub1.phenotype_term_reference using btree (ixn_id);-
CREATE INDEX ix_phenotype_term_reference_ixn_id ON pub1.phenotype_term_reference USING btree (ixn_id);
Date: 2024-05-29 21:21:14 Duration: 10s335ms
-
CREATE INDEX ix_phenotype_term_reference_ixn_id ON pub1.phenotype_term_reference USING btree (ixn_id);
Date: 2024-05-29 21:21:14 Duration: 0ms
43 5 688.00 KiB 128.00 KiB 144.00 KiB 137.60 KiB create index ix_gene_disease_cur_ref_qty on pub1.gene_disease using btree (curated_reference_qty) where (curated_reference_qty > ?);-
CREATE INDEX ix_gene_disease_cur_ref_qty ON pub1.gene_disease USING btree (curated_reference_qty) WHERE (curated_reference_qty > 0);
Date: 2024-05-29 23:46:04 Duration: 0ms
44 5 62.44 MiB 10.91 MiB 13.57 MiB 12.49 MiB create index ix_phenotype_term_phenotype_id on pub1.phenotype_term using btree (phenotype_id);-
CREATE INDEX ix_phenotype_term_phenotype_id ON pub1.phenotype_term USING btree (phenotype_id);
Date: 2024-05-29 23:46:20 Duration: 0ms
45 5 1001.64 MiB 192.80 MiB 204.91 MiB 200.33 MiB create index ix_phenotype_term_reference_source_acc_db_id on pub1.phenotype_term_reference using btree (source_acc_db_id);-
CREATE INDEX ix_phenotype_term_reference_source_acc_db_id ON pub1.phenotype_term_reference USING btree (source_acc_db_id);
Date: 2024-05-29 21:20:53 Duration: 7s373ms
-
CREATE INDEX ix_phenotype_term_reference_source_acc_db_id ON pub1.phenotype_term_reference USING btree (source_acc_db_id);
Date: 2024-05-29 21:20:53 Duration: 0ms
46 5 239.64 MiB 46.75 MiB 49.25 MiB 47.93 MiB create index ix_chem_disease_ref_src_db on pub1.chem_disease_reference using btree (source_acc_db_id);-
CREATE INDEX ix_chem_disease_ref_src_db ON pub1.chem_disease_reference USING btree (source_acc_db_id);
Date: 2024-05-29 21:22:09 Duration: 1s915ms
-
CREATE INDEX ix_chem_disease_ref_src_db ON pub1.chem_disease_reference USING btree (source_acc_db_id);
Date: 2024-05-29 21:22:09 Duration: 0ms
47 5 1001.64 MiB 182.41 MiB 212.80 MiB 200.33 MiB create index ix_phenotype_term_ref_reference_id on pub1.phenotype_term_reference using btree (reference_id);-
CREATE INDEX ix_phenotype_term_ref_reference_id ON pub1.phenotype_term_reference USING btree (reference_id);
Date: 2024-05-29 21:20:29 Duration: 10s637ms
-
CREATE INDEX ix_phenotype_term_ref_reference_id ON pub1.phenotype_term_reference USING btree (reference_id);
Date: 2024-05-29 21:20:29 Duration: 0ms
48 5 1001.64 MiB 196.02 MiB 204.42 MiB 200.33 MiB create index ix_phenotype_term_ref_taxon_id on pub1.phenotype_term_reference using btree (taxon_id);-
CREATE INDEX ix_phenotype_term_ref_taxon_id ON pub1.phenotype_term_reference USING btree (taxon_id);
Date: 2024-05-29 21:20:36 Duration: 7s169ms
-
CREATE INDEX ix_phenotype_term_ref_taxon_id ON pub1.phenotype_term_reference USING btree (taxon_id);
Date: 2024-05-29 21:20:36 Duration: 0ms
49 5 1.37 GiB 260.72 MiB 300.95 MiB 281.14 MiB create index ix_phenotype_term_ref_ids on pub1.phenotype_term_reference using btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);-
CREATE INDEX ix_phenotype_term_ref_ids ON pub1.phenotype_term_reference USING btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);
Date: 2024-05-29 21:21:39 Duration: 13s805ms
-
CREATE INDEX ix_phenotype_term_ref_ids ON pub1.phenotype_term_reference USING btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);
Date: 2024-05-29 21:21:39 Duration: 0ms
50 5 239.64 MiB 47.01 MiB 48.77 MiB 47.93 MiB create index ix_chem_disease_ref_source_cd on pub1.chem_disease_reference using btree (source_cd);-
CREATE INDEX ix_chem_disease_ref_source_cd ON pub1.chem_disease_reference USING btree (source_cd);
Date: 2024-05-29 21:22:07 Duration: 1s948ms
-
CREATE INDEX ix_chem_disease_ref_source_cd ON pub1.chem_disease_reference USING btree (source_cd);
Date: 2024-05-29 21:22:07 Duration: 0ms
51 5 239.63 MiB 43.46 MiB 50.79 MiB 47.93 MiB create index ix_chem_disease_ref_net_sc on pub1.chem_disease_reference using btree (network_score);-
CREATE INDEX ix_chem_disease_ref_net_sc ON pub1.chem_disease_reference USING btree (network_score);
Date: 2024-05-29 21:22:22 Duration: 5s122ms
-
CREATE INDEX ix_chem_disease_ref_net_sc ON pub1.chem_disease_reference USING btree (network_score);
Date: 2024-05-29 21:22:22 Duration: 0ms
52 5 155.72 MiB 27.27 MiB 33.35 MiB 31.14 MiB create index ix_term_enrich_tgt_match on pub1.term_enrichment using btree (target_match_qty);-
CREATE INDEX ix_term_enrich_tgt_match ON pub1.term_enrichment USING btree (target_match_qty);
Date: 2024-05-29 23:15:02 Duration: 1s860ms
-
CREATE INDEX ix_term_enrich_tgt_match ON pub1.term_enrichment USING btree (target_match_qty);
Date: 2024-05-29 23:15:02 Duration: 0ms
53 5 624.02 MiB 123.69 MiB 126.41 MiB 124.80 MiB create index ix_gene_disease_ind_chem_qty on pub1.gene_disease using btree (indirect_chem_qty) where (indirect_chem_qty > ?);-
CREATE INDEX ix_gene_disease_ind_chem_qty ON pub1.gene_disease USING btree (indirect_chem_qty) WHERE (indirect_chem_qty > 0);
Date: 2024-05-29 23:46:11 Duration: 7s59ms
-
CREATE INDEX ix_gene_disease_ind_chem_qty ON pub1.gene_disease USING btree (indirect_chem_qty) WHERE (indirect_chem_qty > 0);
Date: 2024-05-29 23:46:11 Duration: 0ms
54 5 155.71 MiB 30.23 MiB 32.38 MiB 31.14 MiB create index ix_term_enrich_obj_type on pub1.term_enrichment using btree (object_type_id);-
CREATE INDEX ix_term_enrich_obj_type ON pub1.term_enrichment USING btree (object_type_id);
Date: 2024-05-29 23:15:01 Duration: 1s304ms
-
CREATE INDEX ix_term_enrich_obj_type ON pub1.term_enrichment USING btree (object_type_id);
Date: 2024-05-29 23:15:01 Duration: 0ms Database: ctdprd51 User: pub1
55 5 239.63 MiB 45.38 MiB 49.62 MiB 47.93 MiB create index ix_chem_disease_reference_ixn on pub1.chem_disease_reference using btree (ixn_id);-
CREATE INDEX ix_chem_disease_reference_ixn ON pub1.chem_disease_reference USING btree (ixn_id);
Date: 2024-05-29 21:22:14 Duration: 2s835ms
-
CREATE INDEX ix_chem_disease_reference_ixn ON pub1.chem_disease_reference USING btree (ixn_id);
Date: 2024-05-29 21:22:14 Duration: 0ms
56 5 40.00 KiB 8.00 KiB 8.00 KiB 8.00 KiB create index ix_gene_disease_exp_ref_qty on pub1.gene_disease using btree (exposure_reference_qty) where (exposure_reference_qty > ?);-
CREATE INDEX ix_gene_disease_exp_ref_qty ON pub1.gene_disease USING btree (exposure_reference_qty) WHERE (exposure_reference_qty > 0);
Date: 2024-05-29 23:46:12 Duration: 0ms
57 5 239.64 MiB 46.24 MiB 49.45 MiB 47.93 MiB create index ix_chem_disease_ref_mod_tm on pub1.chem_disease_reference using btree (mod_tm);-
CREATE INDEX ix_chem_disease_ref_mod_tm ON pub1.chem_disease_reference USING btree (mod_tm);
Date: 2024-05-29 21:22:17 Duration: 2s725ms
-
CREATE INDEX ix_chem_disease_ref_mod_tm ON pub1.chem_disease_reference USING btree (mod_tm);
Date: 2024-05-29 21:22:17 Duration: 0ms
58 5 62.45 MiB 9.55 MiB 14.55 MiB 12.49 MiB create index ix_phenotype_term_term_id on pub1.phenotype_term using btree (term_id);-
CREATE INDEX ix_phenotype_term_term_id ON pub1.phenotype_term USING btree (term_id);
Date: 2024-05-29 23:46:20 Duration: 0ms
59 5 239.63 MiB 45.50 MiB 50.15 MiB 47.93 MiB create index ix_chem_disease_reference_dis on pub1.chem_disease_reference using btree (disease_id);-
CREATE INDEX ix_chem_disease_reference_dis ON pub1.chem_disease_reference USING btree (disease_id);
Date: 2024-05-29 21:22:02 Duration: 2s748ms
-
CREATE INDEX ix_chem_disease_reference_dis ON pub1.chem_disease_reference USING btree (disease_id);
Date: 2024-05-29 21:22:02 Duration: 0ms
60 5 624.16 MiB 121.71 MiB 126.78 MiB 124.83 MiB create index ix_gene_disease_network_score on pub1.gene_disease using btree (network_score);-
CREATE INDEX ix_gene_disease_network_score ON pub1.gene_disease USING btree (network_score);
Date: 2024-05-29 23:45:57 Duration: 14s600ms
-
CREATE INDEX ix_gene_disease_network_score ON pub1.gene_disease USING btree (network_score);
Date: 2024-05-29 23:45:56 Duration: 0ms Database: ctdprd51 User: pub1
61 5 624.16 MiB 121.12 MiB 130.45 MiB 124.83 MiB create index ix_gene_disease_disease on pub1.gene_disease using btree (disease_id);-
CREATE INDEX ix_gene_disease_disease ON pub1.gene_disease USING btree (disease_id);
Date: 2024-05-29 23:46:03 Duration: 6s882ms
-
CREATE INDEX ix_gene_disease_disease ON pub1.gene_disease USING btree (disease_id);
Date: 2024-05-29 23:46:03 Duration: 0ms
62 5 1001.63 MiB 185.91 MiB 217.50 MiB 200.33 MiB create index ixn_phenotype_term_ref_phenotype_id on pub1.phenotype_term_reference using btree (phenotype_id);-
CREATE INDEX ixn_phenotype_term_ref_phenotype_id ON pub1.phenotype_term_reference USING btree (phenotype_id);
Date: 2024-05-29 21:20:00 Duration: 10s235ms
-
CREATE INDEX ixn_phenotype_term_ref_phenotype_id ON pub1.phenotype_term_reference USING btree (phenotype_id);
Date: 2024-05-29 21:20:00 Duration: 0ms
63 5 217.41 MiB 41.73 MiB 44.73 MiB 43.48 MiB create index ix_term_enrich_raw_p_val on pub1.term_enrichment using btree (raw_p_val);-
CREATE INDEX ix_term_enrich_raw_p_val ON pub1.term_enrichment USING btree (raw_p_val);
Date: 2024-05-29 23:15:13 Duration: 4s802ms
-
CREATE INDEX ix_term_enrich_raw_p_val ON pub1.term_enrichment USING btree (raw_p_val);
Date: 2024-05-29 23:15:13 Duration: 0ms
64 5 1001.64 MiB 193.22 MiB 209.36 MiB 200.33 MiB create index ix_phenotype_term_reference_term_reference_id on pub1.phenotype_term_reference using btree (term_reference_id);-
CREATE INDEX ix_phenotype_term_reference_term_reference_id ON pub1.phenotype_term_reference USING btree (term_reference_id);
Date: 2024-05-29 21:21:03 Duration: 10s566ms
-
CREATE INDEX ix_phenotype_term_reference_term_reference_id ON pub1.phenotype_term_reference USING btree (term_reference_id);
Date: 2024-05-29 21:21:03 Duration: 0ms
65 5 239.63 MiB 43.34 MiB 50.90 MiB 47.93 MiB create index ix_chem_disease_reference_gene on pub1.chem_disease_reference using btree (via_gene_id);-
CREATE INDEX ix_chem_disease_reference_gene ON pub1.chem_disease_reference USING btree (via_gene_id);
Date: 2024-05-29 21:22:11 Duration: 2s734ms
-
CREATE INDEX ix_chem_disease_reference_gene ON pub1.chem_disease_reference USING btree (via_gene_id);
Date: 2024-05-29 21:22:11 Duration: 0ms
66 4 32.00 KiB 8.00 KiB 8.00 KiB 8.00 KiB create index ix_chem_disease_exp_ref_qty on pub1.chem_disease using btree (exposure_reference_qty) where (exposure_reference_qty > ?);-
CREATE INDEX ix_chem_disease_exp_ref_qty ON pub1.chem_disease USING btree (exposure_reference_qty) WHERE (exposure_reference_qty > 0);
Date: 2024-05-29 23:46:23 Duration: 0ms
67 4 1.98 MiB 424.00 KiB 544.00 KiB 506.00 KiB create index ix_chem_disease_cur_ref_qty on pub1.chem_disease using btree (curated_reference_qty) where (curated_reference_qty > ?);-
CREATE INDEX ix_chem_disease_cur_ref_qty ON pub1.chem_disease USING btree (curated_reference_qty) WHERE (curated_reference_qty > 0);
Date: 2024-05-29 23:46:22 Duration: 0ms
68 4 62.27 MiB 15.05 MiB 15.88 MiB 15.57 MiB create index ix_chem_disease_ind_gene_qty on pub1.chem_disease using btree (indirect_gene_qty) where (indirect_gene_qty > ?);-
CREATE INDEX ix_chem_disease_ind_gene_qty ON pub1.chem_disease USING btree (indirect_gene_qty) WHERE (indirect_gene_qty > 0);
Date: 2024-05-29 23:46:23 Duration: 0ms
69 4 63.15 MiB 14.26 MiB 18.09 MiB 15.79 MiB create index ix_chem_disease_disease on pub1.chem_disease using btree (disease_id);-
CREATE INDEX ix_chem_disease_disease ON pub1.chem_disease USING btree (disease_id);
Date: 2024-05-29 23:46:26 Duration: 0ms
70 4 63.15 MiB 13.29 MiB 17.63 MiB 15.79 MiB create index ix_chem_disease_network_score on pub1.chem_disease using btree (network_score);-
CREATE INDEX ix_chem_disease_network_score ON pub1.chem_disease USING btree (network_score);
Date: 2024-05-29 23:46:25 Duration: 1s481ms
-
CREATE INDEX ix_chem_disease_network_score ON pub1.chem_disease USING btree (network_score);
Date: 2024-05-29 23:46:25 Duration: 0ms
71 4 13.08 MiB 8.00 KiB 7.38 MiB 3.27 MiB alter table pub1.phenotype_term_axn add constraint phenotype_term_axn_pk primary key (phenotype_id, term_id, action_type_nm, action_degree_type_nm);-
ALTER TABLE pub1.phenotype_term_axn ADD CONSTRAINT phenotype_term_axn_pk PRIMARY KEY (phenotype_id, term_id, action_type_nm, action_degree_type_nm);
Date: 2024-05-29 23:46:22 Duration: 0ms
72 2 5.93 MiB 2.87 MiB 3.06 MiB 2.96 MiB create index ix_phenotype_term_axn_phenotype_id on pub1.phenotype_term_axn using btree (phenotype_id);-
CREATE INDEX ix_phenotype_term_axn_phenotype_id ON pub1.phenotype_term_axn USING btree (phenotype_id);
Date: 2024-05-29 23:46:22 Duration: 0ms
73 2 5.92 MiB 2.47 MiB 3.45 MiB 2.96 MiB create index ix_phenotype_term_axn_term_id on pub1.phenotype_term_axn using btree (term_id);-
CREATE INDEX ix_phenotype_term_axn_term_id ON pub1.phenotype_term_axn USING btree (term_id);
Date: 2024-05-29 23:46:22 Duration: 0ms
Queries generating the largest temporary files
Rank Size Query 1 1.00 GiB select distinct ;[ Date: 2024-05-28 14:32:59 ]
2 1.00 GiB select distinct ;[ Date: 2024-05-28 14:32:59 ]
3 1.00 GiB select distinct ;[ Date: 2024-05-28 14:32:59 ]
4 1.00 GiB select distinct ;[ Date: 2024-05-28 14:32:59 ]
5 1.00 GiB select distinct ;[ Date: 2024-05-28 14:32:59 ]
6 1.00 GiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2024-05-29 08:13:34 - Database: ctdprd51 - User: load - Application: pg_bulkload ]
7 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
8 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
9 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
10 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
11 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
12 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
13 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
14 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
15 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
16 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
17 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
18 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
19 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
20 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn;[ Date: 2024-05-29 19:28:32 ]
-
Vacuums
Vacuums / Analyzes Distribution
Key values
- 253.49 sec Highest CPU-cost vacuum
Table pub1.gene_disease
Database ctdprd51 - 2024-05-30 00:20:52 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 253.49 sec Highest CPU-cost vacuum
Table pub1.gene_disease
Database ctdprd51 - 2024-05-30 00:20:52 Date
Analyzes per table
Key values
- pubc.log_query (189) Main table analyzed (database ctdprd51)
- 301 analyzes Total
Table Number of analyzes ctdprd51.pubc.log_query 189 ctdprd51.pub1.term_set_enrichment 7 ctdprd51.pub1.term_set_enrichment_agent 5 ctdprd51.pg_catalog.pg_class 5 ctdprd51.pub1.term 4 ctdprd51.pg_catalog.pg_attribute 4 ctdprd51.pub1.reference 3 ctdprd51.pub2.term_set_enrichment_agent 2 ctdprd51.pub2.term_comp_agent 2 ctdprd51.pub1.term_comp_agent 2 ctdprd51.pg_catalog.pg_type 2 ctdprd51.pub1.dag_node 2 ctdprd51.pg_catalog.pg_index 2 ctdprd51.pg_catalog.pg_depend 2 ctdprd51.pub2.term_set_enrichment 2 ctdprd51.pub1.phenotype_term 2 postgres.pg_catalog.pg_shdepend 2 ctdprd51.pub1.db 2 ctdprd51.edit.list_db_report 1 ctdprd51.pub1.gene_gene_reference 1 ctdprd51.edit.db 1 ctdprd51.pub1.slim_term_mapping 1 ctdprd51.pub1.reference_exp 1 ctdprd51.pub1.gene_taxon 1 ctdprd51.pub1.list_db_report 1 ctdprd51.load.data_load 1 ctdprd51.edit.slim_term 1 ctdprd51.edit.geographic_region 1 ctdprd51.pub1.exp_event_location 1 ctdprd51.pg_catalog.pg_trigger 1 ctdprd51.pub1.exp_receptor_gender 1 ctdprd51.pub1.exp_study_factor 1 ctdprd51.pub1.term_reference 1 ctdprd51.pub1.exp_anatomy 1 ctdprd51.pub1.exposure 1 ctdprd51.pg_catalog.pg_attrdef 1 ctdprd51.pub1.reference_party_role 1 ctdprd51.edit.db_report 1 ctdprd51.pg_catalog.pg_description 1 ctdprd51.pub1.gene_gene 1 ctdprd51.edit.db_report_site 1 ctdprd51.pub1.db_report 1 ctdprd51.pub1.img 1 ctdprd51.pg_catalog.pg_shdepend 1 ctdprd51.edit.reference_db_link 1 ctdprd51.pub1.db_link 1 ctdprd51.pub1.chem_disease 1 ctdprd51.edit.term_label_type 1 ctdprd51.pub1.exp_stressor_stressor_src 1 ctdprd51.pub1.exp_receptor_tobacco_use 1 ctdprd51.pub1.reference_party 1 ctdprd51.pg_catalog.pg_proc 1 ctdprd51.pub1.country 1 ctdprd51.pub1.ixn 1 ctdprd51.pub1.dag_edge 1 ctdprd51.pub1.exp_outcome 1 ctdprd51.pub1.exp_event_project 1 ctdprd51.edit.action_type 1 ctdprd51.edit.country 1 ctdprd51.pub1.exp_receptor_race 1 ctdprd51.edit.db_link 1 ctdprd51.pub1.exp_event 1 ctdprd51.pub1.exp_event_assay_method 1 ctdprd51.pub1.gene_gene_ref_throughput 1 ctdprd51.pub1.exp_stressor 1 ctdprd51.edit.action_type_path 1 ctdprd51.pub1.term_pathway 1 ctdprd51.pub1.gene_chem_ref_gene_form 1 ctdprd51.pub1.gene_disease 1 ctdprd51.pub1.geographic_region 1 ctdprd51.pub1.medium 1 ctdprd51.pub1.db_report_site 1 ctdprd51.pub1.gene_go_annot 1 ctdprd51.pg_catalog.pg_constraint 1 ctdprd51.pub1.term_label 1 ctdprd51.edit.action_degree 1 ctdprd51.edit.object_note 1 ctdprd51.pub1.exp_receptor 1 ctdprd51.pub1.action_type 1 ctdprd51.pub1.term_comp 1 Total 301 Vacuums per table
Key values
- pubc.log_query (51) Main table vacuumed on database ctdprd51
- 141 vacuums Total
Index Buffer usage Skipped WAL usage Table Vacuums scans hits misses dirtied pins frozen records full page bytes ctdprd51.pubc.log_query 51 37 44,827 0 9,378 0 3,398 14,917 2,214 10,563,234 ctdprd51.pg_catalog.pg_statistic 6 6 3,727 0 552 0 118 1,971 465 2,118,912 ctdprd51.pg_toast.pg_toast_2619 5 5 21,702 0 6,859 0 50,575 17,659 4,609 2,663,126 ctdprd51.pub1.term 5 3 2,188,082 0 282,300 0 188 1,412,001 470,347 1,978,105,841 ctdprd51.pg_catalog.pg_class 4 4 1,199 0 172 0 0 623 158 795,516 ctdprd51.pub1.term_set_enrichment 3 0 1,652 0 152 0 0 682 5 76,807 ctdprd51.pub1.phenotype_term 3 2 1,301,029 0 140,852 0 0 750,320 150,879 337,611,084 ctdprd51.pub1.term_set_enrichment_agent 3 0 52,667 0 743 0 0 26,278 3 1,575,659 ctdprd51.pg_catalog.pg_attribute 3 3 1,734 0 267 0 211 801 216 896,268 ctdprd51.pub1.reference 3 2 644,820 0 15 0 0 402,812 50,138 219,964,807 ctdprd51.pub1.term_label 2 0 533,545 0 6 0 0 88,926 4 5,276,683 ctdprd51.pg_toast.pg_toast_486223 2 0 65 0 4 0 0 8 1 8,927 ctdprd51.pub2.term_comp_agent 2 0 460 0 157 0 0 149 4 34,029 ctdprd51.pub1.dag_node 2 1 399,804 0 583 0 0 312,993 573 94,253,943 ctdprd51.pub1.reference_party 1 0 5,092 0 4 0 0 2,495 2 162,600 ctdprd51.pub1.exp_receptor_tobacco_use 1 0 1,180 0 3 0 0 555 1 41,164 ctdprd51.pub1.term_comp_agent 1 0 175 0 4 0 0 35 2 16,140 ctdprd51.pub1.db 1 1 146 0 3 0 0 17 1 11,378 ctdprd51.pub1.chem_disease 1 1 261,093 0 9,541 0 0 159,637 9,530 115,415,433 ctdprd51.pub1.db_link 1 0 229,800 0 70,857 0 0 114,781 4 6,805,089 ctdprd51.edit.reference_db_link 1 0 7,186 0 4 0 0 3,580 1 219,546 ctdprd51.pub1.exp_stressor_stressor_src 1 0 2,557 0 5 0 0 1,250 2 86,861 ctdprd51.pg_toast.pg_toast_5273297 1 0 86,875 0 4 0 0 43,309 2 2,571,754 ctdprd51.pub1.exp_receptor 1 0 7,239 0 3 0 0 3,591 1 220,288 ctdprd51.pub1.ixn 1 1 1,426,302 0 83 0 0 951,684 17 65,354,915 ctdprd51.edit.db_report 1 1 117 0 3 0 0 14 2 14,288 ctdprd51.pub1.term_pathway 1 0 3,331 0 4 0 0 1,614 2 108,881 ctdprd51.pub1.gene_chem_ref_gene_form 1 0 31,501 0 5 0 0 15,700 2 940,491 ctdprd51.pub1.exposure 1 0 3,623 0 3 0 0 1,758 1 112,141 ctdprd51.pub1.gene_gene_ref_throughput 1 0 14,266 0 3 0 0 7,093 1 426,906 ctdprd51.pub1.exp_stressor 1 0 5,974 0 3 0 0 2,957 1 182,882 ctdprd51.pub1.reference_party_role 1 0 13,214 0 4 0 0 6,568 1 395,931 ctdprd51.pg_catalog.pg_shdepend 1 1 210 0 13 0 0 103 15 52,258 ctdprd51.pub1.img 1 0 1,108 0 5 0 0 524 2 44,207 ctdprd51.pg_catalog.pg_constraint 1 1 289 0 27 0 0 126 22 87,572 ctdprd51.pub1.gene_go_annot 1 0 506,895 0 253,350 0 0 253,339 9 15,017,671 ctdprd51.pub1.gene_disease 1 1 2,812,789 0 780,237 0 0 1,578,282 727,597 2,010,443,986 ctdprd51.pub1.gene_gene 1 0 11,761 0 5 0 0 5,853 2 358,794 ctdprd51.pg_catalog.pg_trigger 1 1 374 0 43 0 0 152 41 215,333 ctdprd51.pub1.exp_event_location 1 0 3,399 0 3 0 0 1,648 1 105,651 ctdprd51.edit.db_link 1 0 7,397 0 3 0 0 3,580 1 219,615 ctdprd51.pub1.exp_receptor_race 1 0 1,324 0 3 0 0 627 1 45,412 ctdprd51.pub1.exp_receptor_gender 1 0 2,658 0 3 0 0 1,314 1 85,945 ctdprd51.pub2.term_set_enrichment_agent 1 0 347,058 0 306,355 0 0 326,615 12 19,362,166 ctdprd51.pub1.exp_anatomy 1 0 123 0 3 0 0 33 1 10,366 ctdprd51.pub1.exp_event 1 0 12,274 0 3 0 0 6,059 1 365,900 ctdprd51.pub1.exp_study_factor 1 0 79 0 15 0 0 11 2 13,760 ctdprd51.pub2.term_set_enrichment 1 0 11,808 0 5,517 0 0 5,849 2 358,626 ctdprd51.pub1.term_reference 1 0 36,165 0 4 0 0 18,028 1 1,072,071 ctdprd51.pub1.exp_event_assay_method 1 0 4,763 0 4 0 0 2,336 2 150,447 ctdprd51.pub1.exp_event_project 1 0 2,018 0 4 0 0 987 2 72,116 ctdprd51.pub1.slim_term_mapping 1 0 634 0 4 0 0 262 2 28,741 ctdprd51.pg_catalog.pg_index 1 1 191 0 22 0 0 113 21 76,528 ctdprd51.pub1.exp_outcome 1 0 559 0 3 0 0 221 1 21,458 ctdprd51.pub1.gene_gene_reference 1 0 29,697 0 3 0 0 14,789 1 880,970 ctdprd51.pub1.dag_edge 1 0 1,025 0 5 0 0 482 2 39,733 ctdprd51.pg_catalog.pg_type 1 1 73 0 46 0 0 71 35 169,038 ctdprd51.pg_catalog.pg_depend 1 1 647 0 88 0 65 308 94 400,694 ctdprd51.pub1.gene_taxon 1 0 134,765 0 5 0 0 67,325 3 3,996,988 ctdprd51.pg_toast.pg_toast_5273228 1 1 90 0 3 0 0 49 1 11,558 ctdprd51.pub1.reference_exp 1 0 324 0 4 0 0 125 2 22,438 Total 141 75 11,225,481 480,774 1,868,356 0 54,555 6,635,989 1,417,066 4,900,761,566 Tuples removed per table
Key values
- pub1.gene_disease (32658852) Main table with removed tuples on database ctdprd51
- 62090561 tuples Total removed
Index Tuples Pages Table Vacuums scans removed remain not yet removable removed remain ctdprd51.pub1.gene_disease 1 1 32,658,852 32,658,852 0 0 480,278 ctdprd51.pub1.phenotype_term 3 2 19,626,212 26,159,512 16,359,562 0 427,905 ctdprd51.pub1.term 5 3 4,601,797 8,419,075 0 0 594,136 ctdprd51.pub1.chem_disease 1 1 3,303,655 3,303,655 0 0 48,534 ctdprd51.pub1.dag_node 2 1 1,709,773 3,405,114 0 0 123,140 ctdprd51.pub1.reference 3 2 67,806 588,958 0 0 199,924 ctdprd51.pub1.ixn 1 1 53,365 2,209,849 0 0 522,092 ctdprd51.pubc.log_query 51 37 38,181 405,015 38,491 0 20,193 ctdprd51.pg_toast.pg_toast_2619 5 5 20,794 104,241 248 0 62,960 ctdprd51.pg_catalog.pg_attribute 3 3 3,777 26,762 0 85 608 ctdprd51.pg_catalog.pg_statistic 6 6 2,594 12,230 55 0 1,740 ctdprd51.pg_catalog.pg_depend 1 1 1,456 13,666 0 0 145 ctdprd51.pg_catalog.pg_shdepend 1 1 627 2,056 0 3 21 ctdprd51.pg_catalog.pg_class 4 4 482 7,110 0 0 244 ctdprd51.pg_catalog.pg_index 1 1 354 1,153 0 0 41 ctdprd51.pg_catalog.pg_constraint 1 1 242 874 0 9 35 ctdprd51.pg_catalog.pg_type 1 1 174 1,151 0 0 35 ctdprd51.pub1.db 1 1 130 130 0 0 6 ctdprd51.pg_catalog.pg_trigger 1 1 129 1,785 0 12 45 ctdprd51.edit.db_report 1 1 91 158 0 0 4 ctdprd51.pg_toast.pg_toast_5273228 1 1 70 69 0 0 21 ctdprd51.pub1.reference_party 1 0 0 446,427 0 0 2,494 ctdprd51.pub1.exp_receptor_tobacco_use 1 0 0 78,595 0 0 554 ctdprd51.pub1.term_comp_agent 1 0 0 4,466 0 0 43 ctdprd51.pub1.db_link 1 0 0 15,915,293 0 0 114,780 ctdprd51.edit.reference_db_link 1 0 0 321,341 0 0 3,579 ctdprd51.pub1.term_label 2 0 0 18,135,978 6,045,326 0 266,633 ctdprd51.pub1.exp_stressor_stressor_src 1 0 0 282,121 0 0 1,249 ctdprd51.pg_toast.pg_toast_5273297 1 0 0 234,872 0 0 43,429 ctdprd51.pg_toast.pg_toast_486223 2 0 0 24 0 0 6 ctdprd51.pub1.exp_receptor 1 0 0 189,952 0 0 3,590 ctdprd51.pub1.term_pathway 1 0 0 135,792 0 0 1,613 ctdprd51.pub1.gene_chem_ref_gene_form 1 0 0 2,898,239 0 0 15,699 ctdprd51.pub1.exposure 1 0 0 213,457 0 0 1,757 ctdprd51.pub1.gene_gene_ref_throughput 1 0 0 1,363,981 0 0 7,092 ctdprd51.pub1.exp_stressor 1 0 0 206,602 0 0 2,956 ctdprd51.pub1.reference_party_role 1 0 0 1,214,752 0 0 6,567 ctdprd51.pub1.img 1 0 0 50,714 0 0 523 ctdprd51.pub1.gene_go_annot 1 0 0 39,776,068 0 0 253,338 ctdprd51.pub1.gene_gene 1 0 0 1,082,610 0 0 5,852 ctdprd51.pub1.exp_event_location 1 0 0 248,044 0 0 1,647 ctdprd51.edit.db_link 1 0 0 321,341 0 0 3,579 ctdprd51.pub1.exp_receptor_race 1 0 0 96,500 0 0 626 ctdprd51.pub1.exp_receptor_gender 1 0 0 187,167 0 0 1,313 ctdprd51.pub1.term_set_enrichment 3 0 0 76,334 0 0 1,267 ctdprd51.pub2.term_set_enrichment_agent 1 0 0 146,773,858 0 0 1,667,885 ctdprd51.pub1.exp_anatomy 1 0 0 3,797 0 0 32 ctdprd51.pub2.term_comp_agent 2 0 0 56,431 0 0 482 ctdprd51.pub1.term_set_enrichment_agent 3 0 0 3,332,022 0 0 37,866 ctdprd51.pub1.exp_event 1 0 0 206,466 0 0 6,058 ctdprd51.pub1.exp_study_factor 1 0 0 1,613 0 0 10 ctdprd51.pub2.term_set_enrichment 1 0 0 1,790,364 0 0 29,655 ctdprd51.pub1.term_reference 1 0 0 3,334,856 0 0 18,027 ctdprd51.pub1.exp_event_assay_method 1 0 0 234,296 0 0 2,335 ctdprd51.pub1.exp_event_project 1 0 0 94,511 0 0 986 ctdprd51.pub1.slim_term_mapping 1 0 0 32,795 0 0 261 ctdprd51.pub1.exp_outcome 1 0 0 11,800 0 0 220 ctdprd51.pub1.gene_gene_reference 1 0 0 1,358,371 0 0 14,788 ctdprd51.pub1.dag_edge 1 0 0 88,931 0 0 481 ctdprd51.pub1.gene_taxon 1 0 0 10,569,892 0 0 67,324 ctdprd51.pub1.reference_exp 1 0 0 3,437 0 0 124 Total 141 75 62,090,561 328,695,525 22,443,682 109 5,068,827 Pages removed per table
Key values
- pg_catalog.pg_attribute (85) Main table with removed pages on database ctdprd51
- 109 pages Total removed
Table Number of vacuums Index scans Tuples removed Pages removed ctdprd51.pg_catalog.pg_attribute 3 3 3777 85 ctdprd51.pg_catalog.pg_trigger 1 1 129 12 ctdprd51.pg_catalog.pg_constraint 1 1 242 9 ctdprd51.pg_catalog.pg_shdepend 1 1 627 3 ctdprd51.pub1.reference_party 1 0 0 0 ctdprd51.pub1.exp_receptor_tobacco_use 1 0 0 0 ctdprd51.pub1.term_comp_agent 1 0 0 0 ctdprd51.pub1.db 1 1 130 0 ctdprd51.pub1.chem_disease 1 1 3303655 0 ctdprd51.pub1.db_link 1 0 0 0 ctdprd51.edit.reference_db_link 1 0 0 0 ctdprd51.pub1.term_label 2 0 0 0 ctdprd51.pub1.exp_stressor_stressor_src 1 0 0 0 ctdprd51.pg_toast.pg_toast_5273297 1 0 0 0 ctdprd51.pg_toast.pg_toast_486223 2 0 0 0 ctdprd51.pub1.exp_receptor 1 0 0 0 ctdprd51.pg_toast.pg_toast_2619 5 5 20794 0 ctdprd51.pub1.ixn 1 1 53365 0 ctdprd51.edit.db_report 1 1 91 0 ctdprd51.pub1.term_pathway 1 0 0 0 ctdprd51.pub1.gene_chem_ref_gene_form 1 0 0 0 ctdprd51.pub1.exposure 1 0 0 0 ctdprd51.pub1.gene_gene_ref_throughput 1 0 0 0 ctdprd51.pub1.exp_stressor 1 0 0 0 ctdprd51.pub1.reference_party_role 1 0 0 0 ctdprd51.pub1.img 1 0 0 0 ctdprd51.pub1.gene_go_annot 1 0 0 0 ctdprd51.pub1.gene_disease 1 1 32658852 0 ctdprd51.pub1.gene_gene 1 0 0 0 ctdprd51.pub1.exp_event_location 1 0 0 0 ctdprd51.edit.db_link 1 0 0 0 ctdprd51.pub1.exp_receptor_race 1 0 0 0 ctdprd51.pub1.exp_receptor_gender 1 0 0 0 ctdprd51.pub1.term_set_enrichment 3 0 0 0 ctdprd51.pub2.term_set_enrichment_agent 1 0 0 0 ctdprd51.pub1.exp_anatomy 1 0 0 0 ctdprd51.pub2.term_comp_agent 2 0 0 0 ctdprd51.pub1.phenotype_term 3 2 19626212 0 ctdprd51.pg_catalog.pg_class 4 4 482 0 ctdprd51.pub1.term_set_enrichment_agent 3 0 0 0 ctdprd51.pub1.exp_event 1 0 0 0 ctdprd51.pub1.exp_study_factor 1 0 0 0 ctdprd51.pub2.term_set_enrichment 1 0 0 0 ctdprd51.pub1.term_reference 1 0 0 0 ctdprd51.pub1.exp_event_assay_method 1 0 0 0 ctdprd51.pub1.dag_node 2 1 1709773 0 ctdprd51.pub1.exp_event_project 1 0 0 0 ctdprd51.pub1.slim_term_mapping 1 0 0 0 ctdprd51.pg_catalog.pg_index 1 1 354 0 ctdprd51.pub1.exp_outcome 1 0 0 0 ctdprd51.pub1.gene_gene_reference 1 0 0 0 ctdprd51.pub1.dag_edge 1 0 0 0 ctdprd51.pg_catalog.pg_type 1 1 174 0 ctdprd51.pub1.reference 3 2 67806 0 ctdprd51.pg_catalog.pg_statistic 6 6 2594 0 ctdprd51.pg_catalog.pg_depend 1 1 1456 0 ctdprd51.pub1.gene_taxon 1 0 0 0 ctdprd51.pg_toast.pg_toast_5273228 1 1 70 0 ctdprd51.pub1.reference_exp 1 0 0 0 ctdprd51.pub1.term 5 3 4601797 0 ctdprd51.pubc.log_query 51 37 38181 0 Total 141 75 62,090,561 109 Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs May 26 00 0 2 01 0 4 02 0 3 03 0 2 04 0 2 05 0 2 06 0 2 07 0 1 08 0 1 09 0 1 10 0 1 11 0 0 12 0 1 13 0 1 14 0 0 15 0 1 16 0 1 17 0 0 18 0 1 19 0 0 20 0 1 21 0 0 22 0 1 23 0 1 May 27 00 0 3 01 0 3 02 0 3 03 0 3 04 0 1 05 0 2 06 0 2 07 0 1 08 0 1 09 0 1 10 0 0 11 0 1 12 0 1 13 0 0 14 0 1 15 0 1 16 0 0 17 0 1 18 0 0 19 0 1 20 0 0 21 0 1 22 0 0 23 0 1 May 28 00 0 4 01 0 3 02 0 3 03 0 2 04 0 2 05 0 2 06 0 1 07 0 1 08 0 2 09 0 1 10 0 0 11 0 1 12 0 1 13 0 14 14 0 0 15 0 1 16 0 14 17 0 1 18 0 0 19 0 1 20 0 0 21 0 1 22 0 1 23 0 1 May 29 00 0 3 01 0 4 02 0 2 03 0 3 04 0 2 05 0 3 06 0 1 07 0 1 08 0 1 09 0 0 10 0 2 11 0 1 12 0 4 13 0 0 14 0 1 15 0 0 16 0 1 17 0 12 18 0 8 19 0 0 20 0 0 21 0 1 22 0 1 23 0 24 May 30 00 0 10 01 0 5 02 0 2 03 0 6 04 0 2 05 0 1 06 0 5 07 0 1 08 0 1 09 0 2 10 0 6 11 0 3 12 0 1 13 0 0 14 0 1 15 0 0 16 0 1 17 0 0 18 0 1 19 0 1 20 0 0 21 0 0 22 0 1 23 0 0 May 31 00 0 4 01 0 3 02 0 3 03 0 2 04 0 1 05 0 3 06 0 1 07 0 1 08 0 1 09 0 1 10 0 1 11 0 0 12 0 1 13 0 1 14 0 0 15 0 1 16 0 0 17 0 3 18 0 0 19 0 1 20 0 0 21 0 1 22 0 0 23 0 1 Jun 01 00 0 4 01 0 3 02 0 5 03 0 1 04 0 4 05 0 3 06 0 1 07 0 1 08 0 1 09 0 1 10 0 1 11 0 0 12 0 1 13 0 0 14 0 1 15 0 0 16 0 0 17 0 1 18 0 0 19 0 0 20 0 1 21 0 2 22 0 1 23 0 0 - 253.49 sec Highest CPU-cost vacuum
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Locks
Locks by types
Key values
- AccessShareLock Main Lock Type
- 1 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query 1 1 1m7s 1m7s 1m7s 1m7s select count(*) from edit.db_link;-
select count(*) from edit.db_link;
Date: 2024-05-29 12:16:45
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select count(*) from edit.db_link;
Date: 2024-05-29 12:16:45
Queries that waited the most
Rank Wait time Query 1 1m7s select count(*) from edit.db_link;[ Date: 2024-05-29 12:16:45 ]
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Queries
Queries by type
Key values
- 11,899 Total read queries
- 445 Total write queries
Queries by database
Key values
- unknown Main database
- 6,425 Requests
- 1d2h54m11s (unknown)
- Main time consuming database
Database Request type Count Duration ctdprd51 Total 5,948 1d1h56m11s copy to 49 18m40s cte 26 1m17s ddl 1 4s587ms insert 2 11m48s others 1 2s675ms select 5,868 1d1h24m16s tcl 1 1s373ms unknown Total 6,425 1d2h54m11s copy to 255 1h45m46s cte 21 31s346ms ddl 52 38m22s insert 29 41m25s others 28 52m9s select 6,031 22h24m20s update 9 31m35s Queries by user
Key values
- unknown Main user
- 14,361 Requests
User Request type Count Duration edit Total 2 2s978ms select 2 2s978ms editeu Total 8 26s321ms select 8 26s321ms load Total 64 48m47s others 2 5s350ms select 62 48m41s postgres Total 108 40m55s copy to 108 40m55s pub1 Total 17 24m7s ddl 2 9s174ms insert 3 23m17s select 10 38s666ms tcl 2 2s747ms pub2 Total 2 9s39ms select 2 9s39ms pubc Total 3 10s62ms select 3 10s62ms pubeu Total 12,216 2d3m48s cte 42 1m56s select 12,174 2d1m51s qaeu Total 139 1h30m14s cte 21 1m11s select 118 1h29m3s unknown Total 14,361 2d4h40m27s copy to 681 6h24m32s cte 53 1m18s ddl 101 1h15m45s insert 53 1h18m33s others 43 1h41m34s select 13,416 1d17h21m46s update 14 36m55s Duration by user
Key values
- 2d4h40m27s (unknown) Main time consuming user
User Request type Count Duration edit Total 2 2s978ms select 2 2s978ms editeu Total 8 26s321ms select 8 26s321ms load Total 64 48m47s others 2 5s350ms select 62 48m41s postgres Total 108 40m55s copy to 108 40m55s pub1 Total 17 24m7s ddl 2 9s174ms insert 3 23m17s select 10 38s666ms tcl 2 2s747ms pub2 Total 2 9s39ms select 2 9s39ms pubc Total 3 10s62ms select 3 10s62ms pubeu Total 12,216 2d3m48s cte 42 1m56s select 12,174 2d1m51s qaeu Total 139 1h30m14s cte 21 1m11s select 118 1h29m3s unknown Total 14,361 2d4h40m27s copy to 681 6h24m32s cte 53 1m18s ddl 101 1h15m45s insert 53 1h18m33s others 43 1h41m34s select 13,416 1d17h21m46s update 14 36m55s Queries by host
Key values
- unknown Main host
- 26,920 Requests
- 4d8h9m9s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 12,293 Requests
- 2d4h17m42s (unknown)
- Main time consuming application
Application Request type Count Duration pgAdmin 4 - CONN:9603023 Total 1 1s373ms tcl 1 1s373ms pgAdmin 4 - CONN:9791214 Total 1 1s489ms select 1 1s489ms pg_bulkload Total 23 13m35s select 23 13m35s pg_dump Total 49 18m40s copy to 49 18m40s psql Total 6 21s883ms ddl 1 4s587ms select 5 17s296ms unknown Total 12,293 2d4h17m42s copy to 255 1h45m46s cte 47 1m48s ddl 52 38m22s insert 31 53m14s others 29 52m11s select 11,870 1d23h34m42s update 9 31m35s Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2024-06-01 01:24:25 Date
Number of cancelled queries (5 minutes period)
NO DATASET
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Top Queries
Histogram of query times
Key values
- 9,215 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 1h56m select pub1.maint_term_derive_data ();[ Date: 2024-05-30 05:55:20 - Bind query: yes ]
2 1h35m57s select pub1.maint_gene_chem_ref_gene_form_refresh ();[ Date: 2024-05-30 01:57:01 - Bind query: yes ]
3 1h7m21s SELECT maint_term_derive_nm_fts ();[ Date: 2024-05-30 03:07:10 - Bind query: yes ]
4 46m7s VACUUM FULL ANALYZE;[ Date: 2024-05-30 03:58:57 - Bind query: yes ]
5 39m46s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');[ Date: 2024-05-29 20:50:52 - Bind query: yes ]
6 38m56s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');[ Date: 2024-05-29 20:11:00 - Bind query: yes ]
7 34m6s SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;[ Date: 2024-05-29 18:39:35 - Bind query: yes ]
8 33m23s select pub1.maint_cached_value_refresh_data_metrics ();[ Date: 2024-05-30 06:38:45 - Bind query: yes ]
9 33m14s SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;[ Date: 2024-05-30 12:04:32 - Database: ctdprd51 - User: qaeu - Bind query: yes ]
10 23m16s COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2024-06-01 19:00:07 ]
11 23m6s insert into pub1.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;[ Date: 2024-05-29 17:57:10 - Bind query: yes ]
12 23m6s COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2024-06-01 19:40:08 ]
13 23m2s update pub1.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));[ Date: 2024-05-30 00:15:50 - Bind query: yes ]
14 17m6s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1232823') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-05-31 06:15:12 - Bind query: yes ]
15 17m6s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1232823') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-05-27 11:39:36 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
16 16m10s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2024-05-31 00:16:12 ]
17 16m6s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2024-05-30 00:16:08 ]
18 16m5s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2024-06-01 00:16:06 ]
19 16m1s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2024-05-29 00:16:03 ]
20 16m /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2024-05-27 00:16:02 ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 1d5h43m14s 3,309 1s18ms 54s858ms 32s334ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration May 26 00 4 33s188ms 8s297ms 01 2 9s960ms 4s980ms 02 1 3s64ms 3s64ms 03 2 6s729ms 3s364ms 04 4 12s514ms 3s128ms 05 6 25s929ms 4s321ms 06 4 9s326ms 2s331ms 07 3 24s528ms 8s176ms 08 5 21s121ms 4s224ms 10 1 1s53ms 1s53ms 11 5 18s621ms 3s724ms 13 1 1s948ms 1s948ms 15 5 17s904ms 3s580ms 16 4 13s764ms 3s441ms 17 6 28s646ms 4s774ms 18 4 25s294ms 6s323ms 19 3 14s587ms 4s862ms 20 4 14s26ms 3s506ms 21 3 13s696ms 4s565ms 22 6 18s963ms 3s160ms 23 3 10s254ms 3s418ms May 27 00 3 8s559ms 2s853ms 01 5 31s510ms 6s302ms 02 1 3s986ms 3s986ms 03 1 5s333ms 5s333ms 04 4 13s227ms 3s306ms 05 3 16s864ms 5s621ms 06 3 14s301ms 4s767ms 07 2 8s410ms 4s205ms 08 4 25s631ms 6s407ms 09 4 17s491ms 4s372ms 10 2 10s290ms 5s145ms 11 3 19s688ms 6s562ms 12 2 8s719ms 4s359ms 13 2 6s891ms 3s445ms 14 1 6s490ms 6s490ms 15 4 15s226ms 3s806ms 16 2 11s126ms 5s563ms 17 2 40s535ms 20s267ms 18 3 4s991ms 1s663ms 19 5 14s350ms 2s870ms 20 5 13s709ms 2s741ms 21 1 4s809ms 4s809ms 22 3 15s231ms 5s77ms 23 5 25s916ms 5s183ms May 28 00 1 21s490ms 21s490ms 01 2 7s723ms 3s861ms 03 3 9s975ms 3s325ms 05 5 15s104ms 3s20ms 06 1 5s479ms 5s479ms 08 2 5s57ms 2s528ms 09 1 5s971ms 5s971ms 10 4 14s178ms 3s544ms 11 2 3s953ms 1s976ms 12 1 5s790ms 5s790ms 13 1 3s115ms 3s115ms 14 1 6s482ms 6s482ms 15 2 7s311ms 3s655ms 16 3 10s83ms 3s361ms 17 4 20s656ms 5s164ms 18 2 8s549ms 4s274ms 19 6 10s871ms 1s811ms 21 4 9s959ms 2s489ms 22 4 10s309ms 2s577ms 23 2 3s199ms 1s599ms May 29 00 3 13s239ms 4s413ms 01 5 29s154ms 5s830ms 02 2 10s102ms 5s51ms 03 3 7s876ms 2s625ms 04 1 2s193ms 2s193ms 05 5 21s382ms 4s276ms 06 1 13s437ms 13s437ms 07 2 8s764ms 4s382ms 08 3 20s998ms 6s999ms 09 3 8s387ms 2s795ms 10 1 26s919ms 26s919ms 11 3 13s886ms 4s628ms 12 1 1s381ms 1s381ms 13 4 19s386ms 4s846ms 14 3 8s207ms 2s735ms 15 2 7s732ms 3s866ms 16 2 12s324ms 6s162ms 17 1 2s694ms 2s694ms 18 3 12s455ms 4s151ms 19 54 31m45s 35s292ms 20 99 56m44s 34s388ms 21 93 56m25s 36s404ms 22 96 56m23s 35s245ms 23 62 36m7s 34s953ms May 30 00 1 8s75ms 8s75ms 01 1 1s948ms 1s948ms 02 44 25m12s 34s365ms 03 92 56m51s 37s83ms 04 98 56m22s 34s511ms 05 85 49m52s 35s200ms 06 93 56m 36s130ms 07 96 53m54s 33s695ms 08 99 56m29s 34s234ms 09 99 56m27s 34s214ms 10 100 57m19s 34s396ms 11 92 56m 36s524ms 12 91 56m41s 37s375ms 13 100 57m5s 34s255ms 14 97 56m50s 35s160ms 15 96 56m29s 35s302ms 16 95 56m37s 35s758ms 17 96 56m14s 35s151ms 18 97 56m43s 35s88ms 19 97 56m49s 35s147ms 20 100 56m38s 33s987ms 21 95 56m25s 35s634ms 22 96 57m11s 35s744ms 23 96 56m19s 35s202ms May 31 00 96 56m51s 35s533ms 01 97 56m28s 34s937ms 02 94 56m47s 36s252ms 03 93 56m27s 36s424ms 04 94 56m41s 36s181ms 05 59 34m12s 34s781ms 07 2 8s501ms 4s250ms 08 2 6s767ms 3s383ms 09 2 3s815ms 1s907ms 10 1 6s64ms 6s64ms 11 2 3s104ms 1s552ms 12 2 8s734ms 4s367ms 13 2 10s780ms 5s390ms 14 2 9s739ms 4s869ms 15 1 2s668ms 2s668ms 17 2 8s331ms 4s165ms 18 1 7s982ms 7s982ms 20 3 11s84ms 3s694ms 21 1 5s2ms 5s2ms 22 2 13s520ms 6s760ms 23 1 6s383ms 6s383ms Jun 01 00 3 11s369ms 3s789ms 02 4 31s140ms 7s785ms 03 3 10s739ms 3s579ms 04 1 5s152ms 5s152ms 05 1 3s136ms 3s136ms 06 2 9s48ms 4s524ms 07 1 4s925ms 4s925ms 08 4 21s59ms 5s264ms 10 3 11s959ms 3s986ms 13 2 4s624ms 2s312ms 14 5 23s824ms 4s764ms 15 2 8s419ms 4s209ms 16 1 4s949ms 4s949ms 17 2 11s601ms 5s800ms 18 3 9s187ms 3s62ms 19 1 6s567ms 6s567ms 21 2 5s871ms 2s935ms 22 4 19s95ms 4s773ms 23 1 4s723ms 4s723ms [ User: pubeu - Total duration: 21h17m36s - Times executed: 2274 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2064774') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 8842450;
Date: 2024-05-30 10:42:49 Duration: 54s858ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2069554') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 1549650;
Date: 2024-05-29 22:08:24 Duration: 45s83ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2069554') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 1541300;
Date: 2024-05-30 03:29:25 Duration: 43s243ms Database: ctdprd51 User: pubeu Bind query: yes
2 1h56m 1 1h56m 1h56m 1h56m select pub1.maint_term_derive_data ();Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration May 30 05 1 1h56m 1h56m -
select pub1.maint_term_derive_data ();
Date: 2024-05-30 05:55:20 Duration: 1h56m Bind query: yes
3 1h52m14s 7 15m52s 16m10s 16m2s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration May 26 00 1 15m52s 15m52s May 27 00 1 16m 16m May 28 00 1 15m56s 15m56s May 29 00 1 16m1s 16m1s May 30 00 1 16m6s 16m6s May 31 00 1 16m10s 16m10s Jun 01 00 1 16m5s 16m5s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-05-31 00:16:12 Duration: 16m10s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-05-30 00:16:08 Duration: 16m6s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-06-01 00:16:06 Duration: 16m5s
4 1h41m39s 108 1s94ms 17m6s 56s474ms select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration May 26 00 1 1s317ms 1s317ms 01 1 1s459ms 1s459ms 02 3 4m36s 1m32s 03 1 1s620ms 1s620ms 05 1 1s456ms 1s456ms 06 2 4m33s 2m16s 07 1 1s693ms 1s693ms 08 1 1s822ms 1s822ms 09 1 1s743ms 1s743ms 10 1 4m1s 4m1s 11 1 1s432ms 1s432ms 12 5 8s299ms 1s659ms 13 1 2s27ms 2s27ms 17 1 1s441ms 1s441ms 19 1 4m 4m 23 1 3s118ms 3s118ms May 27 00 4 6s121ms 1s530ms 02 1 1s255ms 1s255ms 03 1 1s694ms 1s694ms 04 1 1s509ms 1s509ms 05 1 1s700ms 1s700ms 06 1 1s444ms 1s444ms 07 1 3m35s 3m35s 09 1 1s433ms 1s433ms 10 1 1s528ms 1s528ms 11 3 17m9s 5m43s 13 1 1s653ms 1s653ms 16 1 1s491ms 1s491ms 21 1 1s548ms 1s548ms 22 2 1m19s 39s650ms May 28 00 2 4m50s 2m25s 02 1 1s684ms 1s684ms 04 1 1s448ms 1s448ms 06 1 9m9s 9m9s 08 1 1s564ms 1s564ms 12 1 3m46s 3m46s 13 2 3s29ms 1s514ms 14 1 1s498ms 1s498ms 16 1 1s232ms 1s232ms 22 3 4s246ms 1s415ms May 29 03 1 1s465ms 1s465ms 07 2 3m37s 1m48s 09 3 48s94ms 16s31ms 11 1 1s362ms 1s362ms 12 2 3s50ms 1s525ms 19 1 1s547ms 1s547ms 22 1 1s554ms 1s554ms May 30 01 1 1m35s 1m35s 04 5 39s290ms 7s858ms 08 3 3m39s 1m13s 12 1 1s363ms 1s363ms 19 1 3s90ms 3s90ms 22 2 8m28s 4m14s May 31 04 2 2s971ms 1s485ms 06 1 17m6s 17m6s 07 2 3s101ms 1s550ms 08 1 1s626ms 1s626ms 09 1 3m35s 3m35s 11 2 2s871ms 1s435ms 12 1 1s740ms 1s740ms 15 1 1s729ms 1s729ms 16 2 2s910ms 1s455ms 20 1 1s630ms 1s630ms Jun 01 02 1 1s600ms 1s600ms 03 2 2s819ms 1s409ms 07 2 3m10s 1m35s 09 2 2s986ms 1s493ms 11 1 3s88ms 3s88ms 13 1 1s758ms 1s758ms 14 1 1s468ms 1s468ms 20 2 3s143ms 1s571ms 22 1 1s482ms 1s482ms [ User: pubeu - Total duration: 46m56s - Times executed: 40 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1232823') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-05-31 06:15:12 Duration: 17m6s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1232823') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-05-27 11:39:36 Duration: 17m6s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1223394') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-05-28 06:17:44 Duration: 9m9s Bind query: yes
5 1h35m57s 1 1h35m57s 1h35m57s 1h35m57s select pub1.maint_gene_chem_ref_gene_form_refresh ();Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration May 30 01 1 1h35m57s 1h35m57s -
select pub1.maint_gene_chem_ref_gene_form_refresh ();
Date: 2024-05-30 01:57:01 Duration: 1h35m57s Bind query: yes
6 1h12m51s 3,739 1s43ms 1s688ms 1s169ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration May 26 00 27 31s592ms 1s170ms 01 24 28s45ms 1s168ms 02 16 18s533ms 1s158ms 03 26 30s583ms 1s176ms 04 25 29s564ms 1s182ms 05 32 37s685ms 1s177ms 06 15 17s636ms 1s175ms 07 17 20s39ms 1s178ms 08 20 23s563ms 1s178ms 09 16 18s847ms 1s177ms 10 20 23s627ms 1s181ms 11 12 13s969ms 1s164ms 12 25 29s213ms 1s168ms 13 21 24s492ms 1s166ms 14 29 33s938ms 1s170ms 15 22 25s647ms 1s165ms 16 17 19s719ms 1s159ms 17 28 32s860ms 1s173ms 18 21 24s557ms 1s169ms 19 30 35s97ms 1s169ms 20 34 39s825ms 1s171ms 21 16 18s805ms 1s175ms 22 29 33s773ms 1s164ms 23 23 26s729ms 1s162ms May 27 00 20 23s217ms 1s160ms 01 16 18s854ms 1s178ms 02 29 34s216ms 1s179ms 03 25 29s226ms 1s169ms 04 24 28s123ms 1s171ms 05 19 22s565ms 1s187ms 06 25 29s499ms 1s179ms 07 18 21s92ms 1s171ms 08 19 22s131ms 1s164ms 09 19 22s245ms 1s170ms 10 23 26s957ms 1s172ms 11 21 24s554ms 1s169ms 12 26 30s585ms 1s176ms 13 22 25s701ms 1s168ms 14 18 21s177ms 1s176ms 15 21 24s612ms 1s172ms 16 27 31s619ms 1s171ms 17 26 30s534ms 1s174ms 18 27 31s752ms 1s176ms 19 23 26s843ms 1s167ms 20 23 27s48ms 1s176ms 21 29 33s925ms 1s169ms 22 23 26s787ms 1s164ms 23 28 32s950ms 1s176ms May 28 00 31 36s22ms 1s162ms 01 13 15s346ms 1s180ms 02 20 23s527ms 1s176ms 03 33 38s548ms 1s168ms 04 23 27s74ms 1s177ms 05 22 26s194ms 1s190ms 06 17 19s960ms 1s174ms 07 24 28s222ms 1s175ms 08 27 31s747ms 1s175ms 09 17 19s888ms 1s169ms 10 12 14s209ms 1s184ms 11 23 26s965ms 1s172ms 12 22 25s691ms 1s167ms 13 24 28s61ms 1s169ms 14 28 32s509ms 1s161ms 15 27 31s491ms 1s166ms 16 20 23s365ms 1s168ms 17 31 36s412ms 1s174ms 18 25 29s386ms 1s175ms 19 30 34s923ms 1s164ms 20 22 25s798ms 1s172ms 21 28 32s706ms 1s168ms 22 18 20s947ms 1s163ms 23 34 39s565ms 1s163ms May 29 00 22 25s366ms 1s153ms 01 25 29s182ms 1s167ms 02 32 37s495ms 1s171ms 03 23 26s907ms 1s169ms 04 18 20s821ms 1s156ms 05 22 25s738ms 1s169ms 06 30 34s855ms 1s161ms 07 19 22s235ms 1s170ms 08 23 26s954ms 1s171ms 09 21 24s623ms 1s172ms 10 22 25s709ms 1s168ms 11 19 22s250ms 1s171ms 12 17 19s785ms 1s163ms 13 33 38s737ms 1s173ms 14 22 25s793ms 1s172ms 15 13 15s165ms 1s166ms 16 15 17s374ms 1s158ms 17 28 32s194ms 1s149ms 18 14 15s983ms 1s141ms 19 19 21s843ms 1s149ms 20 28 32s414ms 1s157ms 21 27 32s224ms 1s193ms 22 19 22s505ms 1s184ms 23 24 28s222ms 1s175ms May 30 00 23 26s511ms 1s152ms 01 24 26s923ms 1s121ms 02 31 36s594ms 1s180ms 03 18 21s611ms 1s200ms 04 13 14s992ms 1s153ms 05 9 10s680ms 1s186ms 06 13 15s212ms 1s170ms 07 18 20s744ms 1s152ms 08 27 31s565ms 1s169ms 09 12 13s660ms 1s138ms 10 33 37s120ms 1s124ms 11 19 22s123ms 1s164ms 12 18 20s979ms 1s165ms 13 13 14s911ms 1s147ms 14 28 32s350ms 1s155ms 15 17 19s706ms 1s159ms 16 28 32s601ms 1s164ms 17 14 16s290ms 1s163ms 18 30 34s595ms 1s153ms 19 28 32s293ms 1s153ms 20 17 19s700ms 1s158ms 21 17 19s615ms 1s153ms 22 33 38s515ms 1s167ms 23 26 29s948ms 1s151ms May 31 00 22 25s220ms 1s146ms 01 25 28s918ms 1s156ms 02 20 22s879ms 1s143ms 03 39 45s269ms 1s160ms 04 27 31s189ms 1s155ms 05 27 31s497ms 1s166ms 06 18 20s764ms 1s153ms 07 17 19s998ms 1s176ms 08 18 21s96ms 1s172ms 09 7 9s76ms 1s296ms 10 20 23s454ms 1s172ms 11 21 24s607ms 1s171ms 12 20 23s254ms 1s162ms 13 19 22s254ms 1s171ms 14 18 21s161ms 1s175ms 15 25 29s726ms 1s189ms 16 18 20s984ms 1s165ms 17 23 26s970ms 1s172ms 18 18 21s130ms 1s173ms 19 28 32s744ms 1s169ms 20 24 28s89ms 1s170ms 21 18 21s266ms 1s181ms 22 25 29s319ms 1s172ms 23 21 24s578ms 1s170ms Jun 01 00 29 33s839ms 1s166ms 01 21 24s790ms 1s180ms 02 26 30s642ms 1s178ms 03 24 28s410ms 1s183ms 04 23 27s35ms 1s175ms 05 28 33s65ms 1s180ms 06 28 33s6ms 1s178ms 07 15 17s615ms 1s174ms 08 25 29s262ms 1s170ms 09 19 22s373ms 1s177ms 10 13 15s287ms 1s175ms 11 26 31s5ms 1s192ms 12 10 12s70ms 1s207ms 13 19 22s505ms 1s184ms 14 19 22s616ms 1s190ms 15 22 26s198ms 1s190ms 16 15 17s697ms 1s179ms 17 19 22s608ms 1s189ms 18 18 20s733ms 1s151ms 19 15 17s160ms 1s144ms 20 26 29s774ms 1s145ms 21 27 30s911ms 1s144ms 22 15 17s719ms 1s181ms 23 28 33s2ms 1s178ms [ User: pubeu - Total duration: 32m23s - Times executed: 1663 ]
[ User: qaeu - Total duration: 1s254ms - Times executed: 1 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1494392' or receptorTerm.id = '1494392' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-31 09:24:08 Duration: 1s688ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1504004' or receptorTerm.id = '1504004' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-29 21:11:59 Duration: 1s552ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '2051933' or receptorTerm.id = '2051933' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-29 21:08:18 Duration: 1s354ms Bind query: yes
7 1h7m21s 1 1h7m21s 1h7m21s 1h7m21s select maint_term_derive_nm_fts ();Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration May 30 03 1 1h7m21s 1h7m21s -
SELECT maint_term_derive_nm_fts ();
Date: 2024-05-30 03:07:10 Duration: 1h7m21s Bind query: yes
8 49m8s 218 4s7ms 33m14s 13s525ms select g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(r.acc_txt, ? order by r.acc_txt) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id group by g.nm, g.acc_txt, d.nm, d.acc_db_cd || ? || d.acc_txt, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by g.nm, d.nm;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration May 30 12 218 49m8s 13s525ms [ User: qaeu - Total duration: 33m14s - Times executed: 1 ]
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-05-30 12:04:32 Duration: 33m14s Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-05-30 12:23:22 Duration: 5s874ms Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-05-30 12:23:00 Duration: 5s833ms Bind query: yes
9 46m7s 1 0ms 46m7s 46m7s vacuum full analyze;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration May 30 03 1 46m7s 46m7s -
VACUUM FULL ANALYZE;
Date: 2024-05-30 03:58:57 Duration: 46m7s Bind query: yes
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VACUUM FULL ANALYZE;
Date: 2024-05-30 03:20:22 Duration: 0ms
10 44m37s 72 1s378ms 6m27s 37s187ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration May 28 16 12 1m26s 7s219ms 17 19 11m57s 37s757ms May 29 08 8 7m50s 58s806ms 18 6 1m5s 10s993ms 21 6 14m37s 2m26s 22 14 3m54s 16s744ms 23 7 3m44s 32s113ms [ User: load - Total duration: 13m35s - Times executed: 23 ]
[ Application: pg_bulkload - Total duration: 13m35s - Times executed: 23 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-05-29 21:01:40 Duration: 6m27s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-05-29 21:29:17 Duration: 5m23s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-05-28 17:05:46 Duration: 3m48s Bind query: yes
11 39m46s 1 39m46s 39m46s 39m46s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.gene_go_annot gga, pub1.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration May 29 20 1 39m46s 39m46s -
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-05-29 20:50:52 Duration: 39m46s Bind query: yes
12 38m56s 1 38m56s 38m56s 38m56s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.object_type where cd = ?), ptr.term_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.phenotype_term_reference ptr, pub1.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration May 29 20 1 38m56s 38m56s -
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-05-29 20:11:00 Duration: 38m56s Bind query: yes
13 34m6s 1 34m6s 34m6s 34m6s select i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) from edit.ixn i, edit.reference_ixn r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in (...) order by i.id asc;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration May 29 18 1 34m6s 34m6s -
SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;
Date: 2024-05-29 18:39:35 Duration: 34m6s Bind query: yes
14 33m23s 1 33m23s 33m23s 33m23s select pub1.maint_cached_value_refresh_data_metrics ();Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration May 30 06 1 33m23s 33m23s -
select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-05-30 06:38:45 Duration: 33m23s Bind query: yes
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select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-05-30 06:34:36 Duration: 0ms
15 25m54s 390 3s574ms 16s197ms 3s987ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration May 26 00 2 7s450ms 3s725ms 01 1 3s859ms 3s859ms 02 11 42s707ms 3s882ms 04 5 30s287ms 6s57ms 06 1 3s939ms 3s939ms 07 1 3s785ms 3s785ms 09 1 3s946ms 3s946ms 10 1 3s886ms 3s886ms 11 2 7s413ms 3s706ms 13 2 7s702ms 3s851ms 14 2 7s801ms 3s900ms 16 3 11s428ms 3s809ms 20 1 4s146ms 4s146ms 21 3 11s731ms 3s910ms 22 3 11s807ms 3s935ms May 27 00 2 7s463ms 3s731ms 01 3 12s4ms 4s1ms 02 2 7s519ms 3s759ms 03 9 34s446ms 3s827ms 04 7 26s150ms 3s735ms 05 3 11s275ms 3s758ms 06 3 12s697ms 4s232ms 08 1 3s778ms 3s778ms 09 2 7s421ms 3s710ms 11 2 7s838ms 3s919ms 12 4 15s146ms 3s786ms 13 1 3s651ms 3s651ms 14 2 7s827ms 3s913ms 16 1 3s616ms 3s616ms 17 1 3s714ms 3s714ms 18 1 3s923ms 3s923ms 20 2 7s797ms 3s898ms 21 1 3s649ms 3s649ms 22 2 7s869ms 3s934ms May 28 00 1 3s658ms 3s658ms 01 6 22s348ms 3s724ms 02 1 3s877ms 3s877ms 03 4 16s675ms 4s168ms 04 1 3s638ms 3s638ms 05 1 3s678ms 3s678ms 06 7 26s837ms 3s833ms 08 3 11s388ms 3s796ms 09 4 15s635ms 3s908ms 10 3 11s874ms 3s958ms 11 2 7s371ms 3s685ms 12 1 3s893ms 3s893ms 13 7 27s128ms 3s875ms 14 1 3s858ms 3s858ms 15 5 21s66ms 4s213ms 16 3 11s287ms 3s762ms 18 2 7s460ms 3s730ms 22 2 7s909ms 3s954ms 23 1 3s978ms 3s978ms May 29 00 2 7s551ms 3s775ms 02 1 5s296ms 5s296ms 03 4 15s107ms 3s776ms 04 4 15s 3s750ms 05 3 12s251ms 4s83ms 06 6 22s952ms 3s825ms 07 1 3s677ms 3s677ms 08 2 7s977ms 3s988ms 09 2 7s518ms 3s759ms 10 1 3s748ms 3s748ms 11 2 7s542ms 3s771ms 12 5 18s726ms 3s745ms 13 2 7s641ms 3s820ms 14 1 4s50ms 4s50ms 15 6 22s615ms 3s769ms 16 5 30s765ms 6s153ms 17 4 15s760ms 3s940ms 18 3 11s366ms 3s788ms 20 9 34s784ms 3s864ms 21 1 3s861ms 3s861ms 22 5 19s780ms 3s956ms May 30 00 3 11s648ms 3s882ms 01 4 15s130ms 3s782ms 02 2 7s640ms 3s820ms 03 1 3s993ms 3s993ms 06 2 7s879ms 3s939ms 08 1 4s16ms 4s16ms 09 3 11s552ms 3s850ms 10 4 15s381ms 3s845ms 11 7 27s515ms 3s930ms 12 2 7s777ms 3s888ms 13 2 7s751ms 3s875ms 14 3 11s226ms 3s742ms 15 2 7s682ms 3s841ms 16 2 7s423ms 3s711ms 18 3 11s115ms 3s705ms 19 2 7s761ms 3s880ms 20 3 10s944ms 3s648ms 21 1 3s620ms 3s620ms May 31 01 3 11s490ms 3s830ms 02 1 3s988ms 3s988ms 04 1 3s902ms 3s902ms 05 4 32s93ms 8s23ms 06 3 11s483ms 3s827ms 08 1 3s765ms 3s765ms 09 2 7s552ms 3s776ms 10 1 3s848ms 3s848ms 11 1 3s785ms 3s785ms 13 2 7s528ms 3s764ms 14 1 3s682ms 3s682ms 15 2 7s895ms 3s947ms 17 1 4s149ms 4s149ms 21 1 3s719ms 3s719ms 22 1 4s39ms 4s39ms 23 4 15s516ms 3s879ms Jun 01 00 9 34s784ms 3s864ms 01 14 55s884ms 3s991ms 02 13 53s22ms 4s78ms 03 1 3s796ms 3s796ms 06 6 23s458ms 3s909ms 07 8 31s734ms 3s966ms 08 4 15s822ms 3s955ms 09 1 3s867ms 3s867ms 10 17 1m7s 3s989ms 11 18 1m10s 3s932ms 12 2 8s284ms 4s142ms 13 3 12s78ms 4s26ms 18 2 8s183ms 4s91ms 21 2 7s882ms 3s941ms 22 1 3s815ms 3s815ms 23 1 4s42ms 4s42ms [ User: pubeu - Total duration: 11m41s - Times executed: 177 ]
[ User: qaeu - Total duration: 3s840ms - Times executed: 1 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1384112') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1384112') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-05-31 05:44:42 Duration: 16s197ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1384112') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1384112') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-05-29 16:14:55 Duration: 15s512ms Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1423264') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1423264') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-05-26 04:50:29 Duration: 13s635ms Bind query: yes
16 23m16s 1 23m16s 23m16s 23m16s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jun 01 19 1 23m16s 23m16s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2024-06-01 19:00:07 Duration: 23m16s
17 23m6s 1 23m6s 23m6s 23m6s insert into pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.gene_go_annot;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration May 29 17 1 23m6s 23m6s -
insert into pub1.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;
Date: 2024-05-29 17:57:10 Duration: 23m6s Bind query: yes
18 23m6s 1 23m6s 23m6s 23m6s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jun 01 19 1 23m6s 23m6s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2024-06-01 19:40:08 Duration: 23m6s
19 23m2s 1 23m2s 23m2s 23m2s update pub1.gene_disease gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.gene_disease_reference gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.reference r where has_exposures = true));Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration May 30 00 1 23m2s 23m2s -
update pub1.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));
Date: 2024-05-30 00:15:50 Duration: 23m2s Bind query: yes
20 19m13s 256 1s 6s123ms 4s507ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration May 26 01 1 4s572ms 4s572ms 02 1 4s787ms 4s787ms 03 2 9s74ms 4s537ms 05 2 9s816ms 4s908ms 06 4 17s496ms 4s374ms 08 1 5s196ms 5s196ms 10 3 12s903ms 4s301ms 13 3 12s833ms 4s277ms 15 3 15s132ms 5s44ms 17 4 17s996ms 4s499ms 18 2 8s110ms 4s55ms 19 1 4s424ms 4s424ms 20 2 8s354ms 4s177ms 22 2 9s527ms 4s763ms 23 2 9s211ms 4s605ms May 27 01 1 4s585ms 4s585ms 02 2 9s354ms 4s677ms 04 2 8s646ms 4s323ms 06 1 5s155ms 5s155ms 07 2 9s315ms 4s657ms 08 1 4s556ms 4s556ms 09 4 19s66ms 4s766ms 11 1 5s255ms 5s255ms 12 1 4s970ms 4s970ms 13 2 8s890ms 4s445ms 16 2 9s856ms 4s928ms 18 1 4s695ms 4s695ms 20 1 5s494ms 5s494ms 21 3 13s858ms 4s619ms 22 3 14s387ms 4s795ms 23 1 4s531ms 4s531ms May 28 01 4 15s976ms 3s994ms 03 6 24s991ms 4s165ms 04 4 18s175ms 4s543ms 05 1 4s355ms 4s355ms 06 1 4s629ms 4s629ms 07 1 4s720ms 4s720ms 08 4 18s934ms 4s733ms 09 4 19s129ms 4s782ms 10 1 4s441ms 4s441ms 11 4 17s883ms 4s470ms 12 1 4s494ms 4s494ms 13 5 25s139ms 5s27ms 14 3 15s234ms 5s78ms 15 2 8s876ms 4s438ms 16 2 9s182ms 4s591ms 17 1 5s82ms 5s82ms 22 1 4s299ms 4s299ms 23 4 18s734ms 4s683ms May 29 01 2 9s160ms 4s580ms 02 1 4s236ms 4s236ms 03 4 18s809ms 4s702ms 04 2 9s554ms 4s777ms 05 2 10s255ms 5s127ms 06 2 9s227ms 4s613ms 07 1 4s521ms 4s521ms 08 3 14s27ms 4s675ms 09 2 9s273ms 4s636ms 10 3 13s742ms 4s580ms 13 4 17s827ms 4s456ms 14 6 30s712ms 5s118ms 16 2 5s253ms 2s626ms 17 2 10s115ms 5s57ms 20 1 1s30ms 1s30ms 22 6 30s459ms 5s76ms 23 1 4s358ms 4s358ms May 30 00 1 4s968ms 4s968ms 02 2 2s40ms 1s20ms 03 2 10s474ms 5s237ms 04 1 4s511ms 4s511ms 05 1 1s270ms 1s270ms 06 1 1s88ms 1s88ms 08 2 10s40ms 5s20ms 09 2 10s881ms 5s440ms 10 3 10s732ms 3s577ms 12 1 5s294ms 5s294ms 14 1 5s171ms 5s171ms 15 1 5s35ms 5s35ms 17 2 8s492ms 4s246ms 18 4 18s917ms 4s729ms 20 1 4s796ms 4s796ms 22 1 5s94ms 5s94ms 23 1 1s37ms 1s37ms May 31 00 1 5s96ms 5s96ms 01 3 14s843ms 4s947ms 04 4 16s52ms 4s13ms 05 2 5s809ms 2s904ms 07 2 9s515ms 4s757ms 08 3 13s567ms 4s522ms 09 1 4s550ms 4s550ms 11 1 5s83ms 5s83ms 12 1 5s159ms 5s159ms 13 2 10s253ms 5s126ms 15 1 4s932ms 4s932ms 16 1 4s687ms 4s687ms 17 3 15s832ms 5s277ms 18 3 15s134ms 5s44ms 19 2 6s297ms 3s148ms 20 1 1s8ms 1s8ms 21 1 4s781ms 4s781ms 22 2 11s243ms 5s621ms 23 9 46s24ms 5s113ms Jun 01 04 2 5s896ms 2s948ms 05 2 5s966ms 2s983ms 06 2 10s658ms 5s329ms 07 5 25s529ms 5s105ms 09 1 4s854ms 4s854ms 11 1 1s18ms 1s18ms 12 1 4s763ms 4s763ms 13 1 4s763ms 4s763ms 14 5 21s43ms 4s208ms 16 2 10s1ms 5s 17 2 10s814ms 5s407ms 18 1 1s102ms 1s102ms 19 1 5s380ms 5s380ms 20 1 1s35ms 1s35ms 21 1 5s538ms 5s538ms 22 3 15s924ms 5s308ms 23 1 1s5ms 1s5ms [ User: pubeu - Total duration: 8m45s - Times executed: 115 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1254230' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-05-30 09:50:55 Duration: 6s123ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1351228' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-05-31 22:31:20 Duration: 5s856ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1303296' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-05-28 01:17:03 Duration: 5s847ms Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 3,739 1h12m51s 1s43ms 1s688ms 1s169ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration May 26 00 27 31s592ms 1s170ms 01 24 28s45ms 1s168ms 02 16 18s533ms 1s158ms 03 26 30s583ms 1s176ms 04 25 29s564ms 1s182ms 05 32 37s685ms 1s177ms 06 15 17s636ms 1s175ms 07 17 20s39ms 1s178ms 08 20 23s563ms 1s178ms 09 16 18s847ms 1s177ms 10 20 23s627ms 1s181ms 11 12 13s969ms 1s164ms 12 25 29s213ms 1s168ms 13 21 24s492ms 1s166ms 14 29 33s938ms 1s170ms 15 22 25s647ms 1s165ms 16 17 19s719ms 1s159ms 17 28 32s860ms 1s173ms 18 21 24s557ms 1s169ms 19 30 35s97ms 1s169ms 20 34 39s825ms 1s171ms 21 16 18s805ms 1s175ms 22 29 33s773ms 1s164ms 23 23 26s729ms 1s162ms May 27 00 20 23s217ms 1s160ms 01 16 18s854ms 1s178ms 02 29 34s216ms 1s179ms 03 25 29s226ms 1s169ms 04 24 28s123ms 1s171ms 05 19 22s565ms 1s187ms 06 25 29s499ms 1s179ms 07 18 21s92ms 1s171ms 08 19 22s131ms 1s164ms 09 19 22s245ms 1s170ms 10 23 26s957ms 1s172ms 11 21 24s554ms 1s169ms 12 26 30s585ms 1s176ms 13 22 25s701ms 1s168ms 14 18 21s177ms 1s176ms 15 21 24s612ms 1s172ms 16 27 31s619ms 1s171ms 17 26 30s534ms 1s174ms 18 27 31s752ms 1s176ms 19 23 26s843ms 1s167ms 20 23 27s48ms 1s176ms 21 29 33s925ms 1s169ms 22 23 26s787ms 1s164ms 23 28 32s950ms 1s176ms May 28 00 31 36s22ms 1s162ms 01 13 15s346ms 1s180ms 02 20 23s527ms 1s176ms 03 33 38s548ms 1s168ms 04 23 27s74ms 1s177ms 05 22 26s194ms 1s190ms 06 17 19s960ms 1s174ms 07 24 28s222ms 1s175ms 08 27 31s747ms 1s175ms 09 17 19s888ms 1s169ms 10 12 14s209ms 1s184ms 11 23 26s965ms 1s172ms 12 22 25s691ms 1s167ms 13 24 28s61ms 1s169ms 14 28 32s509ms 1s161ms 15 27 31s491ms 1s166ms 16 20 23s365ms 1s168ms 17 31 36s412ms 1s174ms 18 25 29s386ms 1s175ms 19 30 34s923ms 1s164ms 20 22 25s798ms 1s172ms 21 28 32s706ms 1s168ms 22 18 20s947ms 1s163ms 23 34 39s565ms 1s163ms May 29 00 22 25s366ms 1s153ms 01 25 29s182ms 1s167ms 02 32 37s495ms 1s171ms 03 23 26s907ms 1s169ms 04 18 20s821ms 1s156ms 05 22 25s738ms 1s169ms 06 30 34s855ms 1s161ms 07 19 22s235ms 1s170ms 08 23 26s954ms 1s171ms 09 21 24s623ms 1s172ms 10 22 25s709ms 1s168ms 11 19 22s250ms 1s171ms 12 17 19s785ms 1s163ms 13 33 38s737ms 1s173ms 14 22 25s793ms 1s172ms 15 13 15s165ms 1s166ms 16 15 17s374ms 1s158ms 17 28 32s194ms 1s149ms 18 14 15s983ms 1s141ms 19 19 21s843ms 1s149ms 20 28 32s414ms 1s157ms 21 27 32s224ms 1s193ms 22 19 22s505ms 1s184ms 23 24 28s222ms 1s175ms May 30 00 23 26s511ms 1s152ms 01 24 26s923ms 1s121ms 02 31 36s594ms 1s180ms 03 18 21s611ms 1s200ms 04 13 14s992ms 1s153ms 05 9 10s680ms 1s186ms 06 13 15s212ms 1s170ms 07 18 20s744ms 1s152ms 08 27 31s565ms 1s169ms 09 12 13s660ms 1s138ms 10 33 37s120ms 1s124ms 11 19 22s123ms 1s164ms 12 18 20s979ms 1s165ms 13 13 14s911ms 1s147ms 14 28 32s350ms 1s155ms 15 17 19s706ms 1s159ms 16 28 32s601ms 1s164ms 17 14 16s290ms 1s163ms 18 30 34s595ms 1s153ms 19 28 32s293ms 1s153ms 20 17 19s700ms 1s158ms 21 17 19s615ms 1s153ms 22 33 38s515ms 1s167ms 23 26 29s948ms 1s151ms May 31 00 22 25s220ms 1s146ms 01 25 28s918ms 1s156ms 02 20 22s879ms 1s143ms 03 39 45s269ms 1s160ms 04 27 31s189ms 1s155ms 05 27 31s497ms 1s166ms 06 18 20s764ms 1s153ms 07 17 19s998ms 1s176ms 08 18 21s96ms 1s172ms 09 7 9s76ms 1s296ms 10 20 23s454ms 1s172ms 11 21 24s607ms 1s171ms 12 20 23s254ms 1s162ms 13 19 22s254ms 1s171ms 14 18 21s161ms 1s175ms 15 25 29s726ms 1s189ms 16 18 20s984ms 1s165ms 17 23 26s970ms 1s172ms 18 18 21s130ms 1s173ms 19 28 32s744ms 1s169ms 20 24 28s89ms 1s170ms 21 18 21s266ms 1s181ms 22 25 29s319ms 1s172ms 23 21 24s578ms 1s170ms Jun 01 00 29 33s839ms 1s166ms 01 21 24s790ms 1s180ms 02 26 30s642ms 1s178ms 03 24 28s410ms 1s183ms 04 23 27s35ms 1s175ms 05 28 33s65ms 1s180ms 06 28 33s6ms 1s178ms 07 15 17s615ms 1s174ms 08 25 29s262ms 1s170ms 09 19 22s373ms 1s177ms 10 13 15s287ms 1s175ms 11 26 31s5ms 1s192ms 12 10 12s70ms 1s207ms 13 19 22s505ms 1s184ms 14 19 22s616ms 1s190ms 15 22 26s198ms 1s190ms 16 15 17s697ms 1s179ms 17 19 22s608ms 1s189ms 18 18 20s733ms 1s151ms 19 15 17s160ms 1s144ms 20 26 29s774ms 1s145ms 21 27 30s911ms 1s144ms 22 15 17s719ms 1s181ms 23 28 33s2ms 1s178ms [ User: pubeu - Total duration: 32m23s - Times executed: 1663 ]
[ User: qaeu - Total duration: 1s254ms - Times executed: 1 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1494392' or receptorTerm.id = '1494392' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-31 09:24:08 Duration: 1s688ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1504004' or receptorTerm.id = '1504004' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-29 21:11:59 Duration: 1s552ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '2051933' or receptorTerm.id = '2051933' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-29 21:08:18 Duration: 1s354ms Bind query: yes
2 3,309 1d5h43m14s 1s18ms 54s858ms 32s334ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration May 26 00 4 33s188ms 8s297ms 01 2 9s960ms 4s980ms 02 1 3s64ms 3s64ms 03 2 6s729ms 3s364ms 04 4 12s514ms 3s128ms 05 6 25s929ms 4s321ms 06 4 9s326ms 2s331ms 07 3 24s528ms 8s176ms 08 5 21s121ms 4s224ms 10 1 1s53ms 1s53ms 11 5 18s621ms 3s724ms 13 1 1s948ms 1s948ms 15 5 17s904ms 3s580ms 16 4 13s764ms 3s441ms 17 6 28s646ms 4s774ms 18 4 25s294ms 6s323ms 19 3 14s587ms 4s862ms 20 4 14s26ms 3s506ms 21 3 13s696ms 4s565ms 22 6 18s963ms 3s160ms 23 3 10s254ms 3s418ms May 27 00 3 8s559ms 2s853ms 01 5 31s510ms 6s302ms 02 1 3s986ms 3s986ms 03 1 5s333ms 5s333ms 04 4 13s227ms 3s306ms 05 3 16s864ms 5s621ms 06 3 14s301ms 4s767ms 07 2 8s410ms 4s205ms 08 4 25s631ms 6s407ms 09 4 17s491ms 4s372ms 10 2 10s290ms 5s145ms 11 3 19s688ms 6s562ms 12 2 8s719ms 4s359ms 13 2 6s891ms 3s445ms 14 1 6s490ms 6s490ms 15 4 15s226ms 3s806ms 16 2 11s126ms 5s563ms 17 2 40s535ms 20s267ms 18 3 4s991ms 1s663ms 19 5 14s350ms 2s870ms 20 5 13s709ms 2s741ms 21 1 4s809ms 4s809ms 22 3 15s231ms 5s77ms 23 5 25s916ms 5s183ms May 28 00 1 21s490ms 21s490ms 01 2 7s723ms 3s861ms 03 3 9s975ms 3s325ms 05 5 15s104ms 3s20ms 06 1 5s479ms 5s479ms 08 2 5s57ms 2s528ms 09 1 5s971ms 5s971ms 10 4 14s178ms 3s544ms 11 2 3s953ms 1s976ms 12 1 5s790ms 5s790ms 13 1 3s115ms 3s115ms 14 1 6s482ms 6s482ms 15 2 7s311ms 3s655ms 16 3 10s83ms 3s361ms 17 4 20s656ms 5s164ms 18 2 8s549ms 4s274ms 19 6 10s871ms 1s811ms 21 4 9s959ms 2s489ms 22 4 10s309ms 2s577ms 23 2 3s199ms 1s599ms May 29 00 3 13s239ms 4s413ms 01 5 29s154ms 5s830ms 02 2 10s102ms 5s51ms 03 3 7s876ms 2s625ms 04 1 2s193ms 2s193ms 05 5 21s382ms 4s276ms 06 1 13s437ms 13s437ms 07 2 8s764ms 4s382ms 08 3 20s998ms 6s999ms 09 3 8s387ms 2s795ms 10 1 26s919ms 26s919ms 11 3 13s886ms 4s628ms 12 1 1s381ms 1s381ms 13 4 19s386ms 4s846ms 14 3 8s207ms 2s735ms 15 2 7s732ms 3s866ms 16 2 12s324ms 6s162ms 17 1 2s694ms 2s694ms 18 3 12s455ms 4s151ms 19 54 31m45s 35s292ms 20 99 56m44s 34s388ms 21 93 56m25s 36s404ms 22 96 56m23s 35s245ms 23 62 36m7s 34s953ms May 30 00 1 8s75ms 8s75ms 01 1 1s948ms 1s948ms 02 44 25m12s 34s365ms 03 92 56m51s 37s83ms 04 98 56m22s 34s511ms 05 85 49m52s 35s200ms 06 93 56m 36s130ms 07 96 53m54s 33s695ms 08 99 56m29s 34s234ms 09 99 56m27s 34s214ms 10 100 57m19s 34s396ms 11 92 56m 36s524ms 12 91 56m41s 37s375ms 13 100 57m5s 34s255ms 14 97 56m50s 35s160ms 15 96 56m29s 35s302ms 16 95 56m37s 35s758ms 17 96 56m14s 35s151ms 18 97 56m43s 35s88ms 19 97 56m49s 35s147ms 20 100 56m38s 33s987ms 21 95 56m25s 35s634ms 22 96 57m11s 35s744ms 23 96 56m19s 35s202ms May 31 00 96 56m51s 35s533ms 01 97 56m28s 34s937ms 02 94 56m47s 36s252ms 03 93 56m27s 36s424ms 04 94 56m41s 36s181ms 05 59 34m12s 34s781ms 07 2 8s501ms 4s250ms 08 2 6s767ms 3s383ms 09 2 3s815ms 1s907ms 10 1 6s64ms 6s64ms 11 2 3s104ms 1s552ms 12 2 8s734ms 4s367ms 13 2 10s780ms 5s390ms 14 2 9s739ms 4s869ms 15 1 2s668ms 2s668ms 17 2 8s331ms 4s165ms 18 1 7s982ms 7s982ms 20 3 11s84ms 3s694ms 21 1 5s2ms 5s2ms 22 2 13s520ms 6s760ms 23 1 6s383ms 6s383ms Jun 01 00 3 11s369ms 3s789ms 02 4 31s140ms 7s785ms 03 3 10s739ms 3s579ms 04 1 5s152ms 5s152ms 05 1 3s136ms 3s136ms 06 2 9s48ms 4s524ms 07 1 4s925ms 4s925ms 08 4 21s59ms 5s264ms 10 3 11s959ms 3s986ms 13 2 4s624ms 2s312ms 14 5 23s824ms 4s764ms 15 2 8s419ms 4s209ms 16 1 4s949ms 4s949ms 17 2 11s601ms 5s800ms 18 3 9s187ms 3s62ms 19 1 6s567ms 6s567ms 21 2 5s871ms 2s935ms 22 4 19s95ms 4s773ms 23 1 4s723ms 4s723ms [ User: pubeu - Total duration: 21h17m36s - Times executed: 2274 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2064774') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 8842450;
Date: 2024-05-30 10:42:49 Duration: 54s858ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2069554') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 1549650;
Date: 2024-05-29 22:08:24 Duration: 45s83ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2069554') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 1541300;
Date: 2024-05-30 03:29:25 Duration: 43s243ms Database: ctdprd51 User: pubeu Bind query: yes
3 726 15m32s 1s162ms 2s113ms 1s284ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration May 26 00 1 1s309ms 1s309ms 01 6 7s640ms 1s273ms 02 2 2s571ms 1s285ms 03 4 5s257ms 1s314ms 04 1 1s324ms 1s324ms 05 5 6s742ms 1s348ms 06 3 3s811ms 1s270ms 07 1 1s267ms 1s267ms 08 1 1s358ms 1s358ms 09 4 5s231ms 1s307ms 10 6 7s772ms 1s295ms 11 3 3s931ms 1s310ms 12 6 7s546ms 1s257ms 13 4 5s140ms 1s285ms 14 1 1s239ms 1s239ms 15 3 3s858ms 1s286ms 16 5 6s251ms 1s250ms 17 4 5s135ms 1s283ms 18 6 7s889ms 1s314ms 19 1 1s294ms 1s294ms 20 2 2s599ms 1s299ms 21 1 1s299ms 1s299ms 22 2 2s540ms 1s270ms 23 4 5s166ms 1s291ms May 27 01 1 1s276ms 1s276ms 02 4 5s71ms 1s267ms 03 5 6s420ms 1s284ms 04 2 2s543ms 1s271ms 05 5 6s747ms 1s349ms 06 1 1s347ms 1s347ms 07 4 5s82ms 1s270ms 08 4 5s216ms 1s304ms 09 5 6s461ms 1s292ms 10 2 2s632ms 1s316ms 11 5 6s428ms 1s285ms 12 3 3s825ms 1s275ms 13 2 2s576ms 1s288ms 14 3 3s932ms 1s310ms 15 1 1s297ms 1s297ms 16 5 6s431ms 1s286ms 17 4 5s142ms 1s285ms 18 7 8s936ms 1s276ms 19 2 2s668ms 1s334ms 20 2 2s609ms 1s304ms 21 6 7s750ms 1s291ms 22 2 2s620ms 1s310ms 23 4 5s98ms 1s274ms May 28 00 4 4s996ms 1s249ms 01 2 2s589ms 1s294ms 02 4 5s129ms 1s282ms 03 2 2s538ms 1s269ms 04 5 6s510ms 1s302ms 05 8 10s438ms 1s304ms 06 2 2s569ms 1s284ms 07 8 10s45ms 1s255ms 08 5 6s397ms 1s279ms 09 7 9s180ms 1s311ms 10 2 2s656ms 1s328ms 11 3 4s190ms 1s396ms 12 3 3s881ms 1s293ms 13 2 2s545ms 1s272ms 14 5 6s337ms 1s267ms 15 8 10s81ms 1s260ms 16 8 10s342ms 1s292ms 17 4 5s156ms 1s289ms 18 1 1s280ms 1s280ms 19 3 3s909ms 1s303ms 20 4 5s59ms 1s264ms 21 5 6s410ms 1s282ms 22 3 3s830ms 1s276ms 23 9 11s681ms 1s297ms May 29 00 7 8s707ms 1s243ms 01 6 8s433ms 1s405ms 02 8 10s50ms 1s256ms 03 4 5s77ms 1s269ms 04 1 1s273ms 1s273ms 05 6 7s785ms 1s297ms 06 4 5s55ms 1s263ms 07 4 5s19ms 1s254ms 08 1 1s281ms 1s281ms 09 1 1s245ms 1s245ms 10 5 6s337ms 1s267ms 11 10 12s607ms 1s260ms 12 3 3s831ms 1s277ms 13 5 6s330ms 1s266ms 14 7 8s887ms 1s269ms 15 1 1s303ms 1s303ms 16 6 7s686ms 1s281ms 17 5 6s467ms 1s293ms 18 5 6s134ms 1s226ms 19 9 11s473ms 1s274ms 20 3 3s923ms 1s307ms 21 10 13s466ms 1s346ms 22 5 6s854ms 1s370ms 23 5 6s456ms 1s291ms May 30 00 4 4s937ms 1s234ms 01 4 4s926ms 1s231ms 02 5 6s930ms 1s386ms 03 2 2s708ms 1s354ms 04 3 3s975ms 1s325ms 05 3 3s955ms 1s318ms 06 1 1s229ms 1s229ms 07 7 8s939ms 1s277ms 08 4 4s922ms 1s230ms 09 1 1s250ms 1s250ms 10 8 10s1ms 1s250ms 11 6 7s571ms 1s261ms 12 1 1s255ms 1s255ms 13 4 4s877ms 1s219ms 14 4 5s9ms 1s252ms 15 7 8s854ms 1s264ms 16 4 4s973ms 1s243ms 17 3 3s906ms 1s302ms 18 6 7s424ms 1s237ms 19 2 2s512ms 1s256ms 20 3 3s856ms 1s285ms 21 3 3s861ms 1s287ms 22 5 6s239ms 1s247ms 23 3 3s829ms 1s276ms May 31 00 5 6s404ms 1s280ms 01 10 12s832ms 1s283ms 02 4 5s36ms 1s259ms 03 5 6s385ms 1s277ms 04 4 5s277ms 1s319ms 05 10 12s892ms 1s289ms 06 1 1s270ms 1s270ms 07 5 6s470ms 1s294ms 08 10 12s867ms 1s286ms 09 3 3s935ms 1s311ms 10 7 8s980ms 1s282ms 11 5 6s287ms 1s257ms 12 3 3s922ms 1s307ms 14 3 3s860ms 1s286ms 15 7 9s11ms 1s287ms 16 7 8s932ms 1s276ms 17 8 10s275ms 1s284ms 18 1 1s303ms 1s303ms 19 7 8s796ms 1s256ms 20 4 5s134ms 1s283ms 21 6 7s625ms 1s270ms 22 7 8s816ms 1s259ms 23 8 10s404ms 1s300ms Jun 01 00 7 8s912ms 1s273ms 01 7 9s14ms 1s287ms 02 12 15s451ms 1s287ms 03 2 2s526ms 1s263ms 04 5 6s365ms 1s273ms 05 10 13s158ms 1s315ms 06 5 6s325ms 1s265ms 07 4 5s122ms 1s280ms 08 4 5s88ms 1s272ms 09 8 10s325ms 1s290ms 10 6 7s905ms 1s317ms 11 3 3s883ms 1s294ms 12 3 3s858ms 1s286ms 13 4 5s191ms 1s297ms 14 2 2s515ms 1s257ms 15 2 2s597ms 1s298ms 16 2 2s658ms 1s329ms 17 3 3s809ms 1s269ms 18 6 7s804ms 1s300ms 19 5 6s327ms 1s265ms 20 6 7s496ms 1s249ms 21 3 3s759ms 1s253ms 22 3 3s802ms 1s267ms 23 8 10s206ms 1s275ms [ User: pubeu - Total duration: 6m48s - Times executed: 318 ]
[ User: qaeu - Total duration: 1s340ms - Times executed: 1 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1209010') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1209010') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-29 01:56:08 Duration: 2s113ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1219405') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1219405') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-30 02:15:13 Duration: 1s972ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1223572') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1223572') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-29 21:16:44 Duration: 1s809ms Database: ctdprd51 User: pubeu Bind query: yes
4 509 10m55s 1s172ms 1s557ms 1s287ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration May 26 00 4 5s180ms 1s295ms 01 1 1s264ms 1s264ms 03 4 5s184ms 1s296ms 04 2 2s629ms 1s314ms 05 5 6s692ms 1s338ms 06 1 1s319ms 1s319ms 07 1 1s284ms 1s284ms 09 1 1s297ms 1s297ms 10 3 3s897ms 1s299ms 11 2 2s726ms 1s363ms 12 2 2s591ms 1s295ms 13 3 3s904ms 1s301ms 14 4 5s160ms 1s290ms 16 1 1s302ms 1s302ms 17 7 8s885ms 1s269ms 18 2 2s490ms 1s245ms 19 2 2s530ms 1s265ms 20 4 5s186ms 1s296ms 21 2 2s692ms 1s346ms 22 4 5s161ms 1s290ms 23 5 6s585ms 1s317ms May 27 00 6 7s497ms 1s249ms 01 2 2s527ms 1s263ms 02 6 7s559ms 1s259ms 03 3 3s839ms 1s279ms 04 5 6s452ms 1s290ms 05 3 4s67ms 1s355ms 06 2 2s585ms 1s292ms 07 4 5s216ms 1s304ms 08 1 1s254ms 1s254ms 09 1 1s217ms 1s217ms 10 3 3s835ms 1s278ms 11 1 1s289ms 1s289ms 12 1 1s340ms 1s340ms 13 3 3s812ms 1s270ms 14 2 2s637ms 1s318ms 15 3 3s792ms 1s264ms 16 1 1s293ms 1s293ms 17 4 5s761ms 1s440ms 18 4 5s192ms 1s298ms 19 4 5s54ms 1s263ms 20 3 3s996ms 1s332ms 21 2 2s522ms 1s261ms 22 3 4s46ms 1s348ms 23 4 5s120ms 1s280ms May 28 00 2 2s521ms 1s260ms 01 3 3s842ms 1s280ms 02 1 1s277ms 1s277ms 03 3 3s730ms 1s243ms 04 1 1s272ms 1s272ms 05 5 6s799ms 1s359ms 06 1 1s269ms 1s269ms 07 2 2s502ms 1s251ms 08 4 5s119ms 1s279ms 09 5 6s448ms 1s289ms 10 5 6s671ms 1s334ms 11 5 6s386ms 1s277ms 12 4 5s279ms 1s319ms 13 1 1s326ms 1s326ms 14 4 5s220ms 1s305ms 15 7 8s897ms 1s271ms 16 3 3s794ms 1s264ms 17 1 1s328ms 1s328ms 19 4 4s952ms 1s238ms 20 1 1s222ms 1s222ms 21 2 2s491ms 1s245ms 22 4 5s264ms 1s316ms 23 6 7s650ms 1s275ms May 29 00 4 5s118ms 1s279ms 01 3 3s920ms 1s306ms 02 2 2s530ms 1s265ms 03 1 1s299ms 1s299ms 04 2 2s642ms 1s321ms 05 5 6s710ms 1s342ms 06 3 3s813ms 1s271ms 07 2 2s560ms 1s280ms 08 2 2s577ms 1s288ms 09 1 1s286ms 1s286ms 10 3 3s866ms 1s288ms 11 5 6s279ms 1s255ms 12 1 1s261ms 1s261ms 13 3 3s754ms 1s251ms 14 7 9s33ms 1s290ms 15 2 2s527ms 1s263ms 17 4 5s29ms 1s257ms 18 2 2s522ms 1s261ms 19 1 1s269ms 1s269ms 20 6 7s367ms 1s227ms 21 2 2s541ms 1s270ms 22 4 5s104ms 1s276ms 23 2 2s558ms 1s279ms May 30 00 3 3s845ms 1s281ms 01 3 3s736ms 1s245ms 02 3 3s875ms 1s291ms 03 4 5s105ms 1s276ms 04 2 2s512ms 1s256ms 05 2 2s729ms 1s364ms 06 2 2s565ms 1s282ms 07 2 2s581ms 1s290ms 08 5 6s358ms 1s271ms 10 6 7s506ms 1s251ms 11 2 2s521ms 1s260ms 12 3 3s872ms 1s290ms 13 5 6s440ms 1s288ms 14 3 3s737ms 1s245ms 15 6 7s608ms 1s268ms 16 3 3s915ms 1s305ms 17 2 2s646ms 1s323ms 18 6 7s600ms 1s266ms 19 1 1s211ms 1s211ms 20 3 3s686ms 1s228ms 21 5 6s244ms 1s248ms 22 3 3s823ms 1s274ms 23 6 7s677ms 1s279ms May 31 01 3 3s794ms 1s264ms 02 3 3s776ms 1s258ms 03 3 3s686ms 1s228ms 04 3 3s722ms 1s240ms 05 3 4s244ms 1s414ms 06 3 3s860ms 1s286ms 07 3 3s996ms 1s332ms 08 3 3s917ms 1s305ms 09 3 4s342ms 1s447ms 10 1 1s193ms 1s193ms 11 6 7s699ms 1s283ms 12 5 6s404ms 1s280ms 13 4 5s16ms 1s254ms 14 3 3s839ms 1s279ms 15 5 6s569ms 1s313ms 16 2 2s538ms 1s269ms 17 5 6s562ms 1s312ms 18 9 11s639ms 1s293ms 19 3 3s823ms 1s274ms 20 3 3s906ms 1s302ms 21 4 5s158ms 1s289ms 22 7 8s881ms 1s268ms 23 1 1s277ms 1s277ms Jun 01 00 3 3s898ms 1s299ms 01 5 6s550ms 1s310ms 02 4 5s9ms 1s252ms 03 3 4s12ms 1s337ms 04 4 5s198ms 1s299ms 05 8 10s473ms 1s309ms 06 2 2s711ms 1s355ms 07 1 1s358ms 1s358ms 08 3 3s791ms 1s263ms 09 3 3s882ms 1s294ms 10 4 5s19ms 1s254ms 12 2 2s540ms 1s270ms 13 4 5s263ms 1s315ms 14 6 7s702ms 1s283ms 15 3 3s872ms 1s290ms 18 1 1s286ms 1s286ms 19 4 5s216ms 1s304ms 20 5 6s125ms 1s225ms 21 1 1s281ms 1s281ms 22 4 5s127ms 1s281ms 23 2 2s456ms 1s228ms [ User: pubeu - Total duration: 4m48s - Times executed: 225 ]
[ User: qaeu - Total duration: 8s528ms - Times executed: 6 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2065138') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2065138') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-31 09:24:10 Duration: 1s557ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2067180') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2067180') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-27 17:14:23 Duration: 1s540ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2066417') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2066417') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-05-31 09:51:05 Duration: 1s495ms Bind query: yes
5 390 25m54s 3s574ms 16s197ms 3s987ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration May 26 00 2 7s450ms 3s725ms 01 1 3s859ms 3s859ms 02 11 42s707ms 3s882ms 04 5 30s287ms 6s57ms 06 1 3s939ms 3s939ms 07 1 3s785ms 3s785ms 09 1 3s946ms 3s946ms 10 1 3s886ms 3s886ms 11 2 7s413ms 3s706ms 13 2 7s702ms 3s851ms 14 2 7s801ms 3s900ms 16 3 11s428ms 3s809ms 20 1 4s146ms 4s146ms 21 3 11s731ms 3s910ms 22 3 11s807ms 3s935ms May 27 00 2 7s463ms 3s731ms 01 3 12s4ms 4s1ms 02 2 7s519ms 3s759ms 03 9 34s446ms 3s827ms 04 7 26s150ms 3s735ms 05 3 11s275ms 3s758ms 06 3 12s697ms 4s232ms 08 1 3s778ms 3s778ms 09 2 7s421ms 3s710ms 11 2 7s838ms 3s919ms 12 4 15s146ms 3s786ms 13 1 3s651ms 3s651ms 14 2 7s827ms 3s913ms 16 1 3s616ms 3s616ms 17 1 3s714ms 3s714ms 18 1 3s923ms 3s923ms 20 2 7s797ms 3s898ms 21 1 3s649ms 3s649ms 22 2 7s869ms 3s934ms May 28 00 1 3s658ms 3s658ms 01 6 22s348ms 3s724ms 02 1 3s877ms 3s877ms 03 4 16s675ms 4s168ms 04 1 3s638ms 3s638ms 05 1 3s678ms 3s678ms 06 7 26s837ms 3s833ms 08 3 11s388ms 3s796ms 09 4 15s635ms 3s908ms 10 3 11s874ms 3s958ms 11 2 7s371ms 3s685ms 12 1 3s893ms 3s893ms 13 7 27s128ms 3s875ms 14 1 3s858ms 3s858ms 15 5 21s66ms 4s213ms 16 3 11s287ms 3s762ms 18 2 7s460ms 3s730ms 22 2 7s909ms 3s954ms 23 1 3s978ms 3s978ms May 29 00 2 7s551ms 3s775ms 02 1 5s296ms 5s296ms 03 4 15s107ms 3s776ms 04 4 15s 3s750ms 05 3 12s251ms 4s83ms 06 6 22s952ms 3s825ms 07 1 3s677ms 3s677ms 08 2 7s977ms 3s988ms 09 2 7s518ms 3s759ms 10 1 3s748ms 3s748ms 11 2 7s542ms 3s771ms 12 5 18s726ms 3s745ms 13 2 7s641ms 3s820ms 14 1 4s50ms 4s50ms 15 6 22s615ms 3s769ms 16 5 30s765ms 6s153ms 17 4 15s760ms 3s940ms 18 3 11s366ms 3s788ms 20 9 34s784ms 3s864ms 21 1 3s861ms 3s861ms 22 5 19s780ms 3s956ms May 30 00 3 11s648ms 3s882ms 01 4 15s130ms 3s782ms 02 2 7s640ms 3s820ms 03 1 3s993ms 3s993ms 06 2 7s879ms 3s939ms 08 1 4s16ms 4s16ms 09 3 11s552ms 3s850ms 10 4 15s381ms 3s845ms 11 7 27s515ms 3s930ms 12 2 7s777ms 3s888ms 13 2 7s751ms 3s875ms 14 3 11s226ms 3s742ms 15 2 7s682ms 3s841ms 16 2 7s423ms 3s711ms 18 3 11s115ms 3s705ms 19 2 7s761ms 3s880ms 20 3 10s944ms 3s648ms 21 1 3s620ms 3s620ms May 31 01 3 11s490ms 3s830ms 02 1 3s988ms 3s988ms 04 1 3s902ms 3s902ms 05 4 32s93ms 8s23ms 06 3 11s483ms 3s827ms 08 1 3s765ms 3s765ms 09 2 7s552ms 3s776ms 10 1 3s848ms 3s848ms 11 1 3s785ms 3s785ms 13 2 7s528ms 3s764ms 14 1 3s682ms 3s682ms 15 2 7s895ms 3s947ms 17 1 4s149ms 4s149ms 21 1 3s719ms 3s719ms 22 1 4s39ms 4s39ms 23 4 15s516ms 3s879ms Jun 01 00 9 34s784ms 3s864ms 01 14 55s884ms 3s991ms 02 13 53s22ms 4s78ms 03 1 3s796ms 3s796ms 06 6 23s458ms 3s909ms 07 8 31s734ms 3s966ms 08 4 15s822ms 3s955ms 09 1 3s867ms 3s867ms 10 17 1m7s 3s989ms 11 18 1m10s 3s932ms 12 2 8s284ms 4s142ms 13 3 12s78ms 4s26ms 18 2 8s183ms 4s91ms 21 2 7s882ms 3s941ms 22 1 3s815ms 3s815ms 23 1 4s42ms 4s42ms [ User: pubeu - Total duration: 11m41s - Times executed: 177 ]
[ User: qaeu - Total duration: 3s840ms - Times executed: 1 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1384112') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1384112') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-05-31 05:44:42 Duration: 16s197ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1384112') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1384112') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-05-29 16:14:55 Duration: 15s512ms Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1423264') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1423264') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-05-26 04:50:29 Duration: 13s635ms Bind query: yes
6 286 13m55s 1s5ms 11s689ms 2s921ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration May 26 00 3 6s406ms 2s135ms 01 8 30s508ms 3s813ms 02 2 8s651ms 4s325ms 03 5 17s406ms 3s481ms 04 9 27s115ms 3s12ms 05 1 6s3ms 6s3ms 06 4 14s438ms 3s609ms 07 2 2s804ms 1s402ms 08 3 8s166ms 2s722ms 09 3 7s391ms 2s463ms 10 3 11s891ms 3s963ms 11 3 7s902ms 2s634ms 12 3 10s441ms 3s480ms 13 3 7s203ms 2s401ms 14 2 6s915ms 3s457ms 15 3 8s954ms 2s984ms 16 1 1s145ms 1s145ms 17 1 2s423ms 2s423ms 18 4 6s867ms 1s716ms 19 1 5s596ms 5s596ms 20 3 13s319ms 4s439ms 21 3 7s551ms 2s517ms 22 3 9s49ms 3s16ms 23 3 4s462ms 1s487ms May 27 00 6 15s402ms 2s567ms 01 3 11s258ms 3s752ms 02 3 5s833ms 1s944ms 03 3 11s413ms 3s804ms 04 4 9s988ms 2s497ms 05 2 4s441ms 2s220ms 06 1 2s656ms 2s656ms 07 2 4s186ms 2s93ms 08 3 6s167ms 2s55ms 09 2 3s407ms 1s703ms 10 1 2s684ms 2s684ms 11 3 16s209ms 5s403ms 12 2 9s442ms 4s721ms 13 5 19s312ms 3s862ms 14 2 2s678ms 1s339ms 15 1 4s363ms 4s363ms 16 2 6s857ms 3s428ms 17 2 12s881ms 6s440ms 18 1 4s888ms 4s888ms 19 1 2s12ms 2s12ms 20 2 5s314ms 2s657ms 21 3 4s184ms 1s394ms 22 1 2s586ms 2s586ms 23 4 14s898ms 3s724ms May 28 00 3 12s330ms 4s110ms 03 2 5s906ms 2s953ms 04 1 2s405ms 2s405ms 05 5 12s137ms 2s427ms 06 3 5s788ms 1s929ms 07 5 15s923ms 3s184ms 08 4 11s127ms 2s781ms 09 1 1s622ms 1s622ms 10 1 5s377ms 5s377ms 11 3 9s163ms 3s54ms 12 2 5s937ms 2s968ms 13 1 1s510ms 1s510ms 14 2 6s577ms 3s288ms 16 2 7s863ms 3s931ms 17 1 1s266ms 1s266ms 18 1 1s259ms 1s259ms 19 3 8s768ms 2s922ms 20 2 3s772ms 1s886ms 21 1 4s392ms 4s392ms 22 1 1s246ms 1s246ms 23 1 1s454ms 1s454ms May 29 00 4 14s682ms 3s670ms 01 2 7s836ms 3s918ms 02 1 1s362ms 1s362ms 03 1 2s885ms 2s885ms 04 5 6s786ms 1s357ms 05 7 25s683ms 3s669ms 06 2 5s717ms 2s858ms 07 1 1s365ms 1s365ms 08 2 4s276ms 2s138ms 10 1 2s525ms 2s525ms 11 1 2s621ms 2s621ms 12 1 1s641ms 1s641ms 13 2 3s572ms 1s786ms 14 1 6s59ms 6s59ms 16 2 5s937ms 2s968ms 17 2 2s668ms 1s334ms 23 1 4s643ms 4s643ms May 30 00 1 1s69ms 1s69ms 02 3 7s434ms 2s478ms 03 1 3s153ms 3s153ms 04 3 5s550ms 1s850ms 05 2 3s474ms 1s737ms 06 1 11s168ms 11s168ms 07 3 6s211ms 2s70ms 08 2 10s995ms 5s497ms 09 3 7s500ms 2s500ms 10 2 5s513ms 2s756ms 15 1 1s195ms 1s195ms 16 1 2s991ms 2s991ms 18 1 6s479ms 6s479ms 21 4 13s568ms 3s392ms May 31 00 2 2s485ms 1s242ms 01 1 3s822ms 3s822ms 03 1 3s26ms 3s26ms 04 1 1s980ms 1s980ms 08 2 8s206ms 4s103ms 10 1 1s349ms 1s349ms 11 2 6s422ms 3s211ms 12 1 2s408ms 2s408ms 13 1 1s217ms 1s217ms 16 1 3s20ms 3s20ms 17 1 1s328ms 1s328ms 19 1 2s629ms 2s629ms Jun 01 01 2 3s667ms 1s833ms 02 1 5s829ms 5s829ms 03 1 1s237ms 1s237ms 04 1 1s335ms 1s335ms 05 2 3s727ms 1s863ms 06 2 4s545ms 2s272ms 07 2 2s710ms 1s355ms 08 1 3s144ms 3s144ms 09 1 2s346ms 2s346ms 10 3 13s148ms 4s382ms 11 1 1s376ms 1s376ms 12 1 2s562ms 2s562ms 13 1 4s908ms 4s908ms 14 2 7s348ms 3s674ms 15 1 1s213ms 1s213ms 16 3 4s892ms 1s630ms 22 1 2s423ms 2s423ms 23 1 3s96ms 3s96ms [ User: pubeu - Total duration: 5m14s - Times executed: 105 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2070029') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-05-27 11:34:05 Duration: 11s689ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2070029') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-05-27 17:14:46 Duration: 11s625ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2070029') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-05-26 04:18:43 Duration: 11s392ms Bind query: yes
7 256 19m13s 1s 6s123ms 4s507ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration May 26 01 1 4s572ms 4s572ms 02 1 4s787ms 4s787ms 03 2 9s74ms 4s537ms 05 2 9s816ms 4s908ms 06 4 17s496ms 4s374ms 08 1 5s196ms 5s196ms 10 3 12s903ms 4s301ms 13 3 12s833ms 4s277ms 15 3 15s132ms 5s44ms 17 4 17s996ms 4s499ms 18 2 8s110ms 4s55ms 19 1 4s424ms 4s424ms 20 2 8s354ms 4s177ms 22 2 9s527ms 4s763ms 23 2 9s211ms 4s605ms May 27 01 1 4s585ms 4s585ms 02 2 9s354ms 4s677ms 04 2 8s646ms 4s323ms 06 1 5s155ms 5s155ms 07 2 9s315ms 4s657ms 08 1 4s556ms 4s556ms 09 4 19s66ms 4s766ms 11 1 5s255ms 5s255ms 12 1 4s970ms 4s970ms 13 2 8s890ms 4s445ms 16 2 9s856ms 4s928ms 18 1 4s695ms 4s695ms 20 1 5s494ms 5s494ms 21 3 13s858ms 4s619ms 22 3 14s387ms 4s795ms 23 1 4s531ms 4s531ms May 28 01 4 15s976ms 3s994ms 03 6 24s991ms 4s165ms 04 4 18s175ms 4s543ms 05 1 4s355ms 4s355ms 06 1 4s629ms 4s629ms 07 1 4s720ms 4s720ms 08 4 18s934ms 4s733ms 09 4 19s129ms 4s782ms 10 1 4s441ms 4s441ms 11 4 17s883ms 4s470ms 12 1 4s494ms 4s494ms 13 5 25s139ms 5s27ms 14 3 15s234ms 5s78ms 15 2 8s876ms 4s438ms 16 2 9s182ms 4s591ms 17 1 5s82ms 5s82ms 22 1 4s299ms 4s299ms 23 4 18s734ms 4s683ms May 29 01 2 9s160ms 4s580ms 02 1 4s236ms 4s236ms 03 4 18s809ms 4s702ms 04 2 9s554ms 4s777ms 05 2 10s255ms 5s127ms 06 2 9s227ms 4s613ms 07 1 4s521ms 4s521ms 08 3 14s27ms 4s675ms 09 2 9s273ms 4s636ms 10 3 13s742ms 4s580ms 13 4 17s827ms 4s456ms 14 6 30s712ms 5s118ms 16 2 5s253ms 2s626ms 17 2 10s115ms 5s57ms 20 1 1s30ms 1s30ms 22 6 30s459ms 5s76ms 23 1 4s358ms 4s358ms May 30 00 1 4s968ms 4s968ms 02 2 2s40ms 1s20ms 03 2 10s474ms 5s237ms 04 1 4s511ms 4s511ms 05 1 1s270ms 1s270ms 06 1 1s88ms 1s88ms 08 2 10s40ms 5s20ms 09 2 10s881ms 5s440ms 10 3 10s732ms 3s577ms 12 1 5s294ms 5s294ms 14 1 5s171ms 5s171ms 15 1 5s35ms 5s35ms 17 2 8s492ms 4s246ms 18 4 18s917ms 4s729ms 20 1 4s796ms 4s796ms 22 1 5s94ms 5s94ms 23 1 1s37ms 1s37ms May 31 00 1 5s96ms 5s96ms 01 3 14s843ms 4s947ms 04 4 16s52ms 4s13ms 05 2 5s809ms 2s904ms 07 2 9s515ms 4s757ms 08 3 13s567ms 4s522ms 09 1 4s550ms 4s550ms 11 1 5s83ms 5s83ms 12 1 5s159ms 5s159ms 13 2 10s253ms 5s126ms 15 1 4s932ms 4s932ms 16 1 4s687ms 4s687ms 17 3 15s832ms 5s277ms 18 3 15s134ms 5s44ms 19 2 6s297ms 3s148ms 20 1 1s8ms 1s8ms 21 1 4s781ms 4s781ms 22 2 11s243ms 5s621ms 23 9 46s24ms 5s113ms Jun 01 04 2 5s896ms 2s948ms 05 2 5s966ms 2s983ms 06 2 10s658ms 5s329ms 07 5 25s529ms 5s105ms 09 1 4s854ms 4s854ms 11 1 1s18ms 1s18ms 12 1 4s763ms 4s763ms 13 1 4s763ms 4s763ms 14 5 21s43ms 4s208ms 16 2 10s1ms 5s 17 2 10s814ms 5s407ms 18 1 1s102ms 1s102ms 19 1 5s380ms 5s380ms 20 1 1s35ms 1s35ms 21 1 5s538ms 5s538ms 22 3 15s924ms 5s308ms 23 1 1s5ms 1s5ms [ User: pubeu - Total duration: 8m45s - Times executed: 115 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1254230' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-05-30 09:50:55 Duration: 6s123ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1351228' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-05-31 22:31:20 Duration: 5s856ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1303296' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-05-28 01:17:03 Duration: 5s847ms Bind query: yes
8 218 49m8s 4s7ms 33m14s 13s525ms select g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(r.acc_txt, ? order by r.acc_txt) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id group by g.nm, g.acc_txt, d.nm, d.acc_db_cd || ? || d.acc_txt, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by g.nm, d.nm;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration May 30 12 218 49m8s 13s525ms [ User: qaeu - Total duration: 33m14s - Times executed: 1 ]
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-05-30 12:04:32 Duration: 33m14s Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-05-30 12:23:22 Duration: 5s874ms Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-05-30 12:23:00 Duration: 5s833ms Bind query: yes
9 142 6m59s 1s9ms 39s444ms 2s953ms select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration May 26 00 2 2s934ms 1s467ms 01 1 18s688ms 18s688ms 02 3 6s906ms 2s302ms 03 1 1s498ms 1s498ms 04 1 6s904ms 6s904ms 05 1 1s433ms 1s433ms 06 1 1s72ms 1s72ms 07 1 1s219ms 1s219ms 08 1 1s295ms 1s295ms 09 1 5s583ms 5s583ms 12 3 44s135ms 14s711ms 15 2 2s932ms 1s466ms 16 1 1s635ms 1s635ms 17 1 1s711ms 1s711ms 18 3 5s307ms 1s769ms 21 5 15s889ms 3s177ms 22 1 1s201ms 1s201ms 23 1 1s531ms 1s531ms May 27 01 3 4s412ms 1s470ms 02 2 3s870ms 1s935ms 03 2 4s489ms 2s244ms 04 1 1s172ms 1s172ms 05 1 1s532ms 1s532ms 06 3 23s626ms 7s875ms 07 1 2s836ms 2s836ms 09 1 2s266ms 2s266ms 10 1 1s480ms 1s480ms 11 1 1s288ms 1s288ms 14 2 2s678ms 1s339ms 18 1 9s66ms 9s66ms 19 1 1s429ms 1s429ms 21 1 2s884ms 2s884ms 22 2 2s771ms 1s385ms 23 2 2s929ms 1s464ms May 28 01 2 4s173ms 2s86ms 03 2 2s971ms 1s485ms 04 2 5s78ms 2s539ms 05 2 3s753ms 1s876ms 07 1 1s544ms 1s544ms 08 1 2s832ms 2s832ms 09 1 2s936ms 2s936ms 11 1 1s607ms 1s607ms 14 1 1s471ms 1s471ms 16 2 4s688ms 2s344ms 19 2 2s964ms 1s482ms 21 2 4s99ms 2s49ms 22 4 14s758ms 3s689ms May 29 00 2 2s356ms 1s178ms 03 2 2s666ms 1s333ms 04 1 1s281ms 1s281ms 05 1 3s153ms 3s153ms 06 3 9s907ms 3s302ms 07 1 2s944ms 2s944ms 09 1 2s211ms 2s211ms 10 2 4s842ms 2s421ms 11 1 9s66ms 9s66ms 12 1 1s711ms 1s711ms 16 2 2s948ms 1s474ms 17 1 1s277ms 1s277ms 18 2 2s770ms 1s385ms 20 1 1s500ms 1s500ms 21 1 1s303ms 1s303ms 23 2 5s886ms 2s943ms May 30 01 2 16s786ms 8s393ms 03 1 1s9ms 1s9ms 05 1 2s519ms 2s519ms 07 1 5s629ms 5s629ms 08 1 1s744ms 1s744ms 10 1 9s611ms 9s611ms 11 1 9s544ms 9s544ms 12 2 2s655ms 1s327ms 13 1 1s453ms 1s453ms 14 2 2s215ms 1s107ms 19 1 1s137ms 1s137ms May 31 00 1 1s283ms 1s283ms 06 1 2s820ms 2s820ms 08 1 1s76ms 1s76ms 09 1 3s106ms 3s106ms 13 1 7s378ms 7s378ms 14 1 1s265ms 1s265ms 15 1 1s258ms 1s258ms 18 2 4s301ms 2s150ms 19 1 1s372ms 1s372ms 23 2 3s177ms 1s588ms Jun 01 01 1 3s29ms 3s29ms 04 1 1s339ms 1s339ms 07 1 1s847ms 1s847ms 12 1 1s184ms 1s184ms 14 1 1s225ms 1s225ms 16 1 8s627ms 8s627ms 17 1 1s923ms 1s923ms 18 1 6s460ms 6s460ms 19 2 2s510ms 1s255ms 20 1 1s200ms 1s200ms 22 2 2s683ms 1s341ms 23 1 6s671ms 6s671ms [ User: pubeu - Total duration: 3m55s - Times executed: 72 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1219385') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-05-26 12:45:07 Duration: 39s444ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1209011') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-05-26 01:39:22 Duration: 18s688ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1240389') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-05-30 01:37:12 Duration: 13s844ms Database: ctdprd51 User: pubeu Bind query: yes
10 108 1h41m39s 1s94ms 17m6s 56s474ms select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration May 26 00 1 1s317ms 1s317ms 01 1 1s459ms 1s459ms 02 3 4m36s 1m32s 03 1 1s620ms 1s620ms 05 1 1s456ms 1s456ms 06 2 4m33s 2m16s 07 1 1s693ms 1s693ms 08 1 1s822ms 1s822ms 09 1 1s743ms 1s743ms 10 1 4m1s 4m1s 11 1 1s432ms 1s432ms 12 5 8s299ms 1s659ms 13 1 2s27ms 2s27ms 17 1 1s441ms 1s441ms 19 1 4m 4m 23 1 3s118ms 3s118ms May 27 00 4 6s121ms 1s530ms 02 1 1s255ms 1s255ms 03 1 1s694ms 1s694ms 04 1 1s509ms 1s509ms 05 1 1s700ms 1s700ms 06 1 1s444ms 1s444ms 07 1 3m35s 3m35s 09 1 1s433ms 1s433ms 10 1 1s528ms 1s528ms 11 3 17m9s 5m43s 13 1 1s653ms 1s653ms 16 1 1s491ms 1s491ms 21 1 1s548ms 1s548ms 22 2 1m19s 39s650ms May 28 00 2 4m50s 2m25s 02 1 1s684ms 1s684ms 04 1 1s448ms 1s448ms 06 1 9m9s 9m9s 08 1 1s564ms 1s564ms 12 1 3m46s 3m46s 13 2 3s29ms 1s514ms 14 1 1s498ms 1s498ms 16 1 1s232ms 1s232ms 22 3 4s246ms 1s415ms May 29 03 1 1s465ms 1s465ms 07 2 3m37s 1m48s 09 3 48s94ms 16s31ms 11 1 1s362ms 1s362ms 12 2 3s50ms 1s525ms 19 1 1s547ms 1s547ms 22 1 1s554ms 1s554ms May 30 01 1 1m35s 1m35s 04 5 39s290ms 7s858ms 08 3 3m39s 1m13s 12 1 1s363ms 1s363ms 19 1 3s90ms 3s90ms 22 2 8m28s 4m14s May 31 04 2 2s971ms 1s485ms 06 1 17m6s 17m6s 07 2 3s101ms 1s550ms 08 1 1s626ms 1s626ms 09 1 3m35s 3m35s 11 2 2s871ms 1s435ms 12 1 1s740ms 1s740ms 15 1 1s729ms 1s729ms 16 2 2s910ms 1s455ms 20 1 1s630ms 1s630ms Jun 01 02 1 1s600ms 1s600ms 03 2 2s819ms 1s409ms 07 2 3m10s 1m35s 09 2 2s986ms 1s493ms 11 1 3s88ms 3s88ms 13 1 1s758ms 1s758ms 14 1 1s468ms 1s468ms 20 2 3s143ms 1s571ms 22 1 1s482ms 1s482ms [ User: pubeu - Total duration: 46m56s - Times executed: 40 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1232823') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-05-31 06:15:12 Duration: 17m6s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1232823') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-05-27 11:39:36 Duration: 17m6s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1223394') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-05-28 06:17:44 Duration: 9m9s Bind query: yes
11 80 1m49s 1s283ms 2s178ms 1s374ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration May 26 05 2 2s611ms 1s305ms 06 1 1s327ms 1s327ms 10 1 1s356ms 1s356ms 11 1 1s315ms 1s315ms 14 5 6s920ms 1s384ms 22 2 2s712ms 1s356ms May 27 00 2 2s608ms 1s304ms 03 1 1s420ms 1s420ms 05 5 6s976ms 1s395ms 06 4 5s415ms 1s353ms 12 2 2s781ms 1s390ms 16 1 1s306ms 1s306ms 17 1 1s306ms 1s306ms 21 1 1s285ms 1s285ms 23 1 1s342ms 1s342ms May 28 01 2 2s713ms 1s356ms 05 2 2s692ms 1s346ms 11 1 1s335ms 1s335ms 15 1 1s373ms 1s373ms 23 3 4s187ms 1s395ms May 29 04 3 4s188ms 1s396ms 05 2 2s761ms 1s380ms 09 3 4s227ms 1s409ms 10 1 1s289ms 1s289ms 12 1 1s467ms 1s467ms 17 1 1s320ms 1s320ms 19 1 1s295ms 1s295ms 21 1 1s308ms 1s308ms May 30 05 3 4s910ms 1s636ms 06 1 1s354ms 1s354ms 10 1 1s418ms 1s418ms 11 1 1s333ms 1s333ms 12 4 5s400ms 1s350ms 20 1 1s305ms 1s305ms 23 1 1s314ms 1s314ms May 31 05 3 4s119ms 1s373ms 06 2 2s811ms 1s405ms 09 1 1s401ms 1s401ms 13 1 1s288ms 1s288ms 15 2 2s682ms 1s341ms 17 1 1s450ms 1s450ms Jun 01 05 3 4s177ms 1s392ms 10 1 1s341ms 1s341ms 16 1 1s411ms 1s411ms 20 1 1s371ms 1s371ms [ User: pubeu - Total duration: 50s587ms - Times executed: 37 ]
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-05-30 05:23:15 Duration: 2s178ms Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-06-01 05:23:08 Duration: 1s488ms Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-05-29 12:14:55 Duration: 1s467ms Database: ctdprd51 User: pubeu Bind query: yes
12 78 9m57s 1s60ms 44s667ms 7s654ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration May 26 03 1 3s217ms 3s217ms 04 1 1s86ms 1s86ms 05 2 2s190ms 1s95ms 06 1 1s521ms 1s521ms 12 1 1s82ms 1s82ms May 27 04 1 3s155ms 3s155ms 05 6 13s764ms 2s294ms 10 1 1s610ms 1s610ms 18 5 11s78ms 2s215ms 19 2 2s604ms 1s302ms May 28 02 3 4s732ms 1s577ms 06 3 4s688ms 1s562ms 08 2 2s588ms 1s294ms 09 2 3s743ms 1s871ms 12 5 1m3s 12s748ms 15 1 11s703ms 11s703ms May 29 00 1 26s514ms 26s514ms 03 1 1s563ms 1s563ms 04 2 4s603ms 2s301ms 05 3 44s229ms 14s743ms 07 1 3s257ms 3s257ms 10 2 3s665ms 1s832ms 19 2 2s825ms 1s412ms May 30 02 3 10s512ms 3s504ms 05 1 44s667ms 44s667ms 08 1 1s364ms 1s364ms 09 1 1s935ms 1s935ms 16 1 12s376ms 12s376ms 21 1 14s998ms 14s998ms May 31 00 1 3s265ms 3s265ms 05 2 3s721ms 1s860ms 09 7 4m9s 35s625ms 10 1 1s591ms 1s591ms 11 1 3s190ms 3s190ms 19 3 4s241ms 1s413ms Jun 01 02 1 1s170ms 1s170ms 08 1 1s456ms 1s456ms 09 1 1s937ms 1s937ms 20 1 7s298ms 7s298ms 22 2 14s733ms 7s366ms [ User: pubeu - Total duration: 6m57s - Times executed: 43 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2069554') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-05-30 05:49:17 Duration: 44s667ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2076831') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-05-31 09:01:10 Duration: 41s522ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2076831') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-05-31 09:01:06 Duration: 39s32ms Database: ctdprd51 User: pubeu Bind query: yes
13 72 44m37s 1s378ms 6m27s 37s187ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration May 28 16 12 1m26s 7s219ms 17 19 11m57s 37s757ms May 29 08 8 7m50s 58s806ms 18 6 1m5s 10s993ms 21 6 14m37s 2m26s 22 14 3m54s 16s744ms 23 7 3m44s 32s113ms [ User: load - Total duration: 13m35s - Times executed: 23 ]
[ Application: pg_bulkload - Total duration: 13m35s - Times executed: 23 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-05-29 21:01:40 Duration: 6m27s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-05-29 21:29:17 Duration: 5m23s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-05-28 17:05:46 Duration: 3m48s Bind query: yes
14 53 1m18s 1s3ms 2s706ms 1s486ms select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where diseaseterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ? offset ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration May 26 01 1 2s144ms 2s144ms 03 1 1s321ms 1s321ms 04 1 1s547ms 1s547ms 05 1 1s512ms 1s512ms 07 1 1s43ms 1s43ms 09 1 2s97ms 2s97ms 11 2 2s185ms 1s92ms 14 1 2s706ms 2s706ms May 27 07 1 1s51ms 1s51ms 09 1 1s3ms 1s3ms 10 1 1s535ms 1s535ms 13 1 1s486ms 1s486ms 19 1 1s378ms 1s378ms 21 1 1s295ms 1s295ms 22 1 1s38ms 1s38ms May 28 04 1 1s567ms 1s567ms 09 1 1s568ms 1s568ms 13 1 1s682ms 1s682ms 16 2 3s260ms 1s630ms 21 1 1s459ms 1s459ms 23 1 1s108ms 1s108ms May 29 02 1 1s53ms 1s53ms 05 1 1s494ms 1s494ms 14 1 1s536ms 1s536ms 15 1 1s61ms 1s61ms 23 1 1s375ms 1s375ms May 30 01 1 1s820ms 1s820ms 02 1 1s803ms 1s803ms 03 1 1s836ms 1s836ms 04 1 1s464ms 1s464ms 10 2 2s871ms 1s435ms 12 1 1s527ms 1s527ms 13 1 1s562ms 1s562ms 15 2 3s965ms 1s982ms 20 1 1s575ms 1s575ms May 31 10 1 1s65ms 1s65ms 11 1 1s570ms 1s570ms 16 1 1s540ms 1s540ms 17 1 1s645ms 1s645ms 20 1 1s635ms 1s635ms Jun 01 00 2 2s614ms 1s307ms 01 1 1s91ms 1s91ms 04 1 1s582ms 1s582ms 06 1 1s445ms 1s445ms 14 1 1s462ms 1s462ms 19 3 4s163ms 1s387ms [ User: pubeu - Total duration: 36s696ms - Times executed: 24 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE diseaseTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2064774') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50 OFFSET 830050;
Date: 2024-05-26 14:48:31 Duration: 2s706ms Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE diseaseTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2064774') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50 OFFSET 830050;
Date: 2024-05-30 15:59:13 Duration: 2s586ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE diseaseTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2064774') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50 OFFSET 50;
Date: 2024-05-26 01:26:31 Duration: 2s144ms Database: ctdprd51 User: pubeu Bind query: yes
15 49 3m21s 1s6ms 12s15ms 4s117ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes desc, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration May 26 00 1 1s214ms 1s214ms 01 1 1s6ms 1s6ms 02 1 5s151ms 5s151ms 06 1 1s20ms 1s20ms 11 1 4s582ms 4s582ms 17 1 5s458ms 5s458ms 19 2 7s427ms 3s713ms 20 1 4s749ms 4s749ms 21 2 6s850ms 3s425ms May 27 01 1 12s15ms 12s15ms 03 1 1s278ms 1s278ms 08 1 6s532ms 6s532ms 17 1 4s260ms 4s260ms 22 1 1s251ms 1s251ms May 28 03 1 6s121ms 6s121ms 07 1 1s829ms 1s829ms 09 1 5s879ms 5s879ms 16 3 10s66ms 3s355ms 18 1 5s778ms 5s778ms 19 1 6s387ms 6s387ms 23 1 2s612ms 2s612ms May 29 05 3 12s572ms 4s190ms 06 1 4s882ms 4s882ms 16 1 6s124ms 6s124ms May 30 01 2 5s833ms 2s916ms 18 2 5s601ms 2s800ms May 31 04 1 1s963ms 1s963ms 10 2 7s118ms 3s559ms 15 1 1s970ms 1s970ms 17 1 2s528ms 2s528ms 20 1 6s699ms 6s699ms Jun 01 02 1 4s621ms 4s621ms 06 2 12s894ms 6s447ms 14 1 6s966ms 6s966ms 16 2 13s142ms 6s571ms 19 1 1s367ms 1s367ms 22 1 2s765ms 2s765ms 23 1 3s208ms 3s208ms [ User: pubeu - Total duration: 1m32s - Times executed: 24 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2070029') ORDER BY actionTypes DESC, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-05-27 01:43:23 Duration: 12s15ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2080358') ORDER BY actionTypes DESC, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-01 16:04:23 Duration: 7s118ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2079933') ORDER BY actionTypes DESC, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-01 06:16:59 Duration: 6s970ms Bind query: yes
16 47 1m48s 1s 3s576ms 2s307ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration May 26 05 2 6s614ms 3s307ms 12 1 1s886ms 1s886ms May 27 05 2 6s637ms 3s318ms May 28 05 4 8s726ms 2s181ms 13 1 1s939ms 1s939ms May 29 05 3 7s758ms 2s586ms 07 1 1s872ms 1s872ms 08 1 3s270ms 3s270ms 09 1 2s424ms 2s424ms 11 1 1s898ms 1s898ms May 30 00 1 2s88ms 2s88ms 05 4 8s866ms 2s216ms 09 1 1s884ms 1s884ms 10 2 4s361ms 2s180ms 11 2 4s643ms 2s321ms 14 1 1s875ms 1s875ms May 31 04 1 1s888ms 1s888ms 05 3 7s887ms 2s629ms 08 1 1s918ms 1s918ms 09 4 8s660ms 2s165ms 15 2 4s370ms 2s185ms 21 1 1s963ms 1s963ms Jun 01 00 1 1s882ms 1s882ms 02 1 2s435ms 2s435ms 05 4 8s741ms 2s185ms 12 1 1s945ms 1s945ms [ User: pubeu - Total duration: 46s564ms - Times executed: 17 ]
[ User: qaeu - Total duration: 30s533ms - Times executed: 9 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589314' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-05-30 11:42:47 Duration: 3s576ms Database: ctdprd51 User: qaeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589128' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-05-29 05:40:12 Duration: 3s440ms Database: ctdprd51 User: qaeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589314' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-05-31 05:40:12 Duration: 3s438ms Database: ctdprd51 User: qaeu Bind query: yes
17 46 2m43s 1s177ms 6s938ms 3s553ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by gd.indirect_chem_qty desc, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration May 26 03 1 5s647ms 5s647ms 08 1 2s913ms 2s913ms 09 1 2s519ms 2s519ms 18 1 6s248ms 6s248ms May 27 02 1 1s275ms 1s275ms 03 1 2s525ms 2s525ms 04 1 1s318ms 1s318ms 09 1 2s467ms 2s467ms 10 2 8s168ms 4s84ms 13 1 4s75ms 4s75ms 16 1 6s704ms 6s704ms 17 2 9s683ms 4s841ms 20 1 1s177ms 1s177ms 22 1 3s23ms 3s23ms May 28 03 1 2s435ms 2s435ms 04 1 1s178ms 1s178ms 14 1 1s364ms 1s364ms 17 1 4s827ms 4s827ms 20 1 5s441ms 5s441ms May 29 00 1 1s195ms 1s195ms 02 2 5s617ms 2s808ms 05 1 6s938ms 6s938ms 10 1 3s127ms 3s127ms 11 1 4s196ms 4s196ms 15 1 2s564ms 2s564ms 20 1 4s390ms 4s390ms May 30 06 1 1s273ms 1s273ms 09 1 1s209ms 1s209ms 18 1 6s217ms 6s217ms 21 1 4s512ms 4s512ms 22 1 4s245ms 4s245ms May 31 00 1 4s701ms 4s701ms 01 1 3s151ms 3s151ms 09 1 2s351ms 2s351ms 10 1 4s475ms 4s475ms 12 1 3s20ms 3s20ms 16 1 1s184ms 1s184ms 19 1 2s501ms 2s501ms Jun 01 00 1 6s32ms 6s32ms 07 1 4s648ms 4s648ms 08 1 5s477ms 5s477ms 18 2 7s422ms 3s711ms [ User: pubeu - Total duration: 1m4s - Times executed: 19 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2072801') ORDER BY gd.indirect_chem_qty DESC, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-05-29 05:26:57 Duration: 6s938ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2072801') ORDER BY gd.indirect_chem_qty DESC, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-05-27 16:42:45 Duration: 6s704ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2072801') ORDER BY gd.indirect_chem_qty DESC, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-05-26 18:11:40 Duration: 6s248ms Bind query: yes
18 46 57s594ms 1s1ms 1s764ms 1s252ms select fg.nm fromgenesymbol, fg.acc_txt fromgeneacc, tg.nm togenesymbol, tg.acc_txt togeneacc, ft.nm fromtaxonnm, ft.secondary_nm fromtaxoncommonnm, ft.acc_txt fromtaxonacc, tt.nm totaxonnm, tt.secondary_nm totaxoncommonnm, tt.acc_txt totaxonacc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( select string_agg(ggt.throughput_txt, ? order by ggt.throughput_txt) from gene_gene_ref_throughput ggt where ggt.gene_gene_reference_id = ggr.id) throughput, count(*) over () fullrowcount from gene_gene_reference ggr inner join term fg on ggr.from_gene_id = fg.id inner join term tg on ggr.to_gene_id = tg.id inner join term ft on ggr.from_taxon_id = ft.id inner join term tt on ggr.to_taxon_id = tt.id where ggr.reference_id = ? order by fg.nm_sort, tg.nm_sort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration May 26 05 4 5s382ms 1s345ms 09 1 1s189ms 1s189ms 21 1 1s175ms 1s175ms 22 1 1s1ms 1s1ms May 27 05 4 5s632ms 1s408ms May 28 05 4 5s106ms 1s276ms May 29 05 4 5s21ms 1s255ms May 30 05 4 5s407ms 1s351ms 07 1 1s30ms 1s30ms 10 2 2s541ms 1s270ms May 31 03 1 1s13ms 1s13ms 05 3 4s305ms 1s435ms 07 1 1s212ms 1s212ms 08 1 1s80ms 1s80ms 09 1 1s54ms 1s54ms 11 1 1s79ms 1s79ms 15 3 3s635ms 1s211ms 16 1 1s205ms 1s205ms 17 1 1s229ms 1s229ms Jun 01 01 1 1s200ms 1s200ms 03 1 1s166ms 1s166ms 05 4 4s890ms 1s222ms 22 1 1s29ms 1s29ms [ User: pubeu - Total duration: 13s688ms - Times executed: 12 ]
[ User: qaeu - Total duration: 5s603ms - Times executed: 4 ]
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-05-26 05:38:07 Duration: 1s764ms Bind query: yes
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-05-30 05:43:07 Duration: 1s528ms Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-05-27 05:38:09 Duration: 1s511ms Database: ctdprd51 User: pubeu Bind query: yes
19 42 2m4s 1s8ms 5s272ms 2s961ms select e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, ( select string_agg(distinct stressorterm.nm || ? || ( select cd from object_type where id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?)) as stressoragents, ( select string_agg(distinct coalesce(receptorterm.nm, ?) || ? || coalesce(( select cd from object_type where id = receptorterm.object_type_id), ?) || ? || coalesce(receptorterm.nm_html, ?) || ? || coalesce(receptorterm.acc_txt, ?) || ? || coalesce(receptorterm.acc_db_cd, ?) || ? || receptor.description, ?)) as receptors, ( select string_agg(distinct country.nm, ?)) as studycountries, ( select string_agg(distinct location.locality_txt, ?)) as localities, ( select string_agg(distinct event.medium_nm || ? || coalesce(event.medium_term_acc_txt, ?), ?)) as assaymediums, ( select string_agg(distinct exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?)) as assayedmarkers, ( select string_agg(distinct diseaseterm.nm || ? || ( select cd from object_type where id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?)) as diseases, ( select string_agg(distinct phenotypeterm.nm || ? || ( select cd from object_type where id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?)) as phenotypes, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, re.author_summary summary, count(*) over () fullrowcount from exposure e inner join reference r on e.reference_id = r.id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join term receptorterm on receptor.term_id = receptorterm.id left outer join exp_event event on e.exp_event_id = event.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join exp_event_location location on e.exp_event_id = location.exp_event_id left outer join country on location.country_id = country.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id inner join reference_exp re on e.reference_id = re.reference_id left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id where e.reference_id = any (array ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like ?) and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressoragents limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration May 26 04 1 1s362ms 1s362ms May 27 00 3 10s375ms 3s458ms 03 1 1s188ms 1s188ms 05 1 1s8ms 1s8ms 08 2 3s704ms 1s852ms 09 2 10s127ms 5s63ms 22 1 5s51ms 5s51ms 23 1 1s74ms 1s74ms May 28 02 1 1s318ms 1s318ms May 29 04 1 1s837ms 1s837ms 07 7 23s470ms 3s352ms 08 1 2s852ms 2s852ms 10 2 7s419ms 3s709ms May 30 17 1 5s272ms 5s272ms 18 6 13s967ms 2s327ms 20 1 2s839ms 2s839ms May 31 05 3 12s401ms 4s133ms Jun 01 03 1 1s474ms 1s474ms 07 1 1s362ms 1s362ms 09 1 5s256ms 5s256ms 13 1 2s380ms 2s380ms 15 1 2s358ms 2s358ms 17 1 5s220ms 5s220ms 21 1 1s60ms 1s60ms [ User: pubeu - Total duration: 1m - Times executed: 21 ]
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1384112') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1384112') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-05-30 17:12:55 Duration: 5s272ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-06-01 09:38:21 Duration: 5s256ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-06-01 17:23:13 Duration: 5s220ms Bind query: yes
20 39 1m48s 1s139ms 5s270ms 2s788ms select e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, ( select string_agg(distinct stressorterm.nm || ? || ( select cd from object_type where id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?)) as stressoragents, ( select string_agg(distinct coalesce(receptorterm.nm, ?) || ? || coalesce(( select cd from object_type where id = receptorterm.object_type_id), ?) || ? || coalesce(receptorterm.nm_html, ?) || ? || coalesce(receptorterm.acc_txt, ?) || ? || coalesce(receptorterm.acc_db_cd, ?) || ? || receptor.description, ?)) as receptors, ( select string_agg(distinct country.nm, ?)) as studycountries, ( select string_agg(distinct location.locality_txt, ?)) as localities, ( select string_agg(distinct event.medium_nm || ? || coalesce(event.medium_term_acc_txt, ?), ?)) as assaymediums, ( select string_agg(distinct exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?)) as assayedmarkers, ( select string_agg(distinct diseaseterm.nm || ? || ( select cd from object_type where id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?)) as diseases, ( select string_agg(distinct phenotypeterm.nm || ? || ( select cd from object_type where id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?)) as phenotypes, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, re.author_summary summary, count(*) over () fullrowcount from exposure e inner join reference r on e.reference_id = r.id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join term receptorterm on receptor.term_id = receptorterm.id left outer join exp_event event on e.exp_event_id = event.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join exp_event_location location on e.exp_event_id = location.exp_event_id left outer join country on location.country_id = country.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id inner join reference_exp re on e.reference_id = re.reference_id left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id where e.reference_id = any (array ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like ?) and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressoragents limit ? offset ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration May 26 00 1 2s393ms 2s393ms 07 1 1s304ms 1s304ms 13 2 3s690ms 1s845ms 14 2 4s339ms 2s169ms 19 1 1s139ms 1s139ms May 27 04 1 5s222ms 5s222ms 08 1 1s843ms 1s843ms 12 2 2s477ms 1s238ms 18 1 3s749ms 3s749ms 19 1 5s172ms 5s172ms 22 1 5s195ms 5s195ms May 28 01 1 1s296ms 1s296ms 04 1 2s753ms 2s753ms 05 1 1s532ms 1s532ms 18 1 1s853ms 1s853ms 20 2 7s326ms 3s663ms May 29 04 1 5s258ms 5s258ms 05 1 2s885ms 2s885ms 13 1 2s491ms 2s491ms 19 1 2s910ms 2s910ms 22 1 1s272ms 1s272ms May 30 04 1 1s943ms 1s943ms 08 1 3s773ms 3s773ms 13 1 3s666ms 3s666ms 15 1 1s284ms 1s284ms 19 1 2s296ms 2s296ms May 31 00 2 6s744ms 3s372ms 16 1 3s859ms 3s859ms 19 1 1s493ms 1s493ms 20 1 2s371ms 2s371ms Jun 01 02 1 5s270ms 5s270ms 10 1 1s832ms 1s832ms 14 1 2s895ms 2s895ms 17 1 5s202ms 5s202ms [ User: pubeu - Total duration: 40s348ms - Times executed: 18 ]
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50 OFFSET 200;
Date: 2024-06-01 02:30:04 Duration: 5s270ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1384112') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1384112') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50 OFFSET 100;
Date: 2024-05-29 04:24:11 Duration: 5s258ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1384112') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1384112') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50 OFFSET 150;
Date: 2024-05-27 04:33:20 Duration: 5s222ms Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 1h56m 1h56m 1h56m 1 1h56m select pub1.maint_term_derive_data ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration May 30 05 1 1h56m 1h56m -
select pub1.maint_term_derive_data ();
Date: 2024-05-30 05:55:20 Duration: 1h56m Bind query: yes
2 1h35m57s 1h35m57s 1h35m57s 1 1h35m57s select pub1.maint_gene_chem_ref_gene_form_refresh ();Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration May 30 01 1 1h35m57s 1h35m57s -
select pub1.maint_gene_chem_ref_gene_form_refresh ();
Date: 2024-05-30 01:57:01 Duration: 1h35m57s Bind query: yes
3 1h7m21s 1h7m21s 1h7m21s 1 1h7m21s select maint_term_derive_nm_fts ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration May 30 03 1 1h7m21s 1h7m21s -
SELECT maint_term_derive_nm_fts ();
Date: 2024-05-30 03:07:10 Duration: 1h7m21s Bind query: yes
4 0ms 46m7s 46m7s 1 46m7s vacuum full analyze;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration May 30 03 1 46m7s 46m7s -
VACUUM FULL ANALYZE;
Date: 2024-05-30 03:58:57 Duration: 46m7s Bind query: yes
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VACUUM FULL ANALYZE;
Date: 2024-05-30 03:20:22 Duration: 0ms
5 39m46s 39m46s 39m46s 1 39m46s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.gene_go_annot gga, pub1.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration May 29 20 1 39m46s 39m46s -
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-05-29 20:50:52 Duration: 39m46s Bind query: yes
6 38m56s 38m56s 38m56s 1 38m56s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.object_type where cd = ?), ptr.term_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.phenotype_term_reference ptr, pub1.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration May 29 20 1 38m56s 38m56s -
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-05-29 20:11:00 Duration: 38m56s Bind query: yes
7 34m6s 34m6s 34m6s 1 34m6s select i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) from edit.ixn i, edit.reference_ixn r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in (...) order by i.id asc;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration May 29 18 1 34m6s 34m6s -
SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;
Date: 2024-05-29 18:39:35 Duration: 34m6s Bind query: yes
8 33m23s 33m23s 33m23s 1 33m23s select pub1.maint_cached_value_refresh_data_metrics ();Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration May 30 06 1 33m23s 33m23s -
select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-05-30 06:38:45 Duration: 33m23s Bind query: yes
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select pub1.maint_cached_value_refresh_data_metrics ();
Date: 2024-05-30 06:34:36 Duration: 0ms
9 23m16s 23m16s 23m16s 1 23m16s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jun 01 19 1 23m16s 23m16s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2024-06-01 19:00:07 Duration: 23m16s
10 23m6s 23m6s 23m6s 1 23m6s insert into pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.gene_go_annot;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration May 29 17 1 23m6s 23m6s -
insert into pub1.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;
Date: 2024-05-29 17:57:10 Duration: 23m6s Bind query: yes
11 23m6s 23m6s 23m6s 1 23m6s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jun 01 19 1 23m6s 23m6s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2024-06-01 19:40:08 Duration: 23m6s
12 23m2s 23m2s 23m2s 1 23m2s update pub1.gene_disease gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.gene_disease_reference gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.reference r where has_exposures = true));Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration May 30 00 1 23m2s 23m2s -
update pub1.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));
Date: 2024-05-30 00:15:50 Duration: 23m2s Bind query: yes
13 15m52s 16m10s 16m2s 7 1h52m14s select maint_query_logs_archive ();Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration May 26 00 1 15m52s 15m52s May 27 00 1 16m 16m May 28 00 1 15m56s 15m56s May 29 00 1 16m1s 16m1s May 30 00 1 16m6s 16m6s May 31 00 1 16m10s 16m10s Jun 01 00 1 16m5s 16m5s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-05-31 00:16:12 Duration: 16m10s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-05-30 00:16:08 Duration: 16m6s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-06-01 00:16:06 Duration: 16m5s
14 1s94ms 17m6s 56s474ms 108 1h41m39s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration May 26 00 1 1s317ms 1s317ms 01 1 1s459ms 1s459ms 02 3 4m36s 1m32s 03 1 1s620ms 1s620ms 05 1 1s456ms 1s456ms 06 2 4m33s 2m16s 07 1 1s693ms 1s693ms 08 1 1s822ms 1s822ms 09 1 1s743ms 1s743ms 10 1 4m1s 4m1s 11 1 1s432ms 1s432ms 12 5 8s299ms 1s659ms 13 1 2s27ms 2s27ms 17 1 1s441ms 1s441ms 19 1 4m 4m 23 1 3s118ms 3s118ms May 27 00 4 6s121ms 1s530ms 02 1 1s255ms 1s255ms 03 1 1s694ms 1s694ms 04 1 1s509ms 1s509ms 05 1 1s700ms 1s700ms 06 1 1s444ms 1s444ms 07 1 3m35s 3m35s 09 1 1s433ms 1s433ms 10 1 1s528ms 1s528ms 11 3 17m9s 5m43s 13 1 1s653ms 1s653ms 16 1 1s491ms 1s491ms 21 1 1s548ms 1s548ms 22 2 1m19s 39s650ms May 28 00 2 4m50s 2m25s 02 1 1s684ms 1s684ms 04 1 1s448ms 1s448ms 06 1 9m9s 9m9s 08 1 1s564ms 1s564ms 12 1 3m46s 3m46s 13 2 3s29ms 1s514ms 14 1 1s498ms 1s498ms 16 1 1s232ms 1s232ms 22 3 4s246ms 1s415ms May 29 03 1 1s465ms 1s465ms 07 2 3m37s 1m48s 09 3 48s94ms 16s31ms 11 1 1s362ms 1s362ms 12 2 3s50ms 1s525ms 19 1 1s547ms 1s547ms 22 1 1s554ms 1s554ms May 30 01 1 1m35s 1m35s 04 5 39s290ms 7s858ms 08 3 3m39s 1m13s 12 1 1s363ms 1s363ms 19 1 3s90ms 3s90ms 22 2 8m28s 4m14s May 31 04 2 2s971ms 1s485ms 06 1 17m6s 17m6s 07 2 3s101ms 1s550ms 08 1 1s626ms 1s626ms 09 1 3m35s 3m35s 11 2 2s871ms 1s435ms 12 1 1s740ms 1s740ms 15 1 1s729ms 1s729ms 16 2 2s910ms 1s455ms 20 1 1s630ms 1s630ms Jun 01 02 1 1s600ms 1s600ms 03 2 2s819ms 1s409ms 07 2 3m10s 1m35s 09 2 2s986ms 1s493ms 11 1 3s88ms 3s88ms 13 1 1s758ms 1s758ms 14 1 1s468ms 1s468ms 20 2 3s143ms 1s571ms 22 1 1s482ms 1s482ms [ User: pubeu - Total duration: 46m56s - Times executed: 40 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1232823') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-05-31 06:15:12 Duration: 17m6s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1232823') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-05-27 11:39:36 Duration: 17m6s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1223394') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-05-28 06:17:44 Duration: 9m9s Bind query: yes
15 1s378ms 6m27s 37s187ms 72 44m37s select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration May 28 16 12 1m26s 7s219ms 17 19 11m57s 37s757ms May 29 08 8 7m50s 58s806ms 18 6 1m5s 10s993ms 21 6 14m37s 2m26s 22 14 3m54s 16s744ms 23 7 3m44s 32s113ms [ User: load - Total duration: 13m35s - Times executed: 23 ]
[ Application: pg_bulkload - Total duration: 13m35s - Times executed: 23 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-05-29 21:01:40 Duration: 6m27s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-05-29 21:29:17 Duration: 5m23s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-05-28 17:05:46 Duration: 3m48s Bind query: yes
16 1s18ms 54s858ms 32s334ms 3,309 1d5h43m14s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration May 26 00 4 33s188ms 8s297ms 01 2 9s960ms 4s980ms 02 1 3s64ms 3s64ms 03 2 6s729ms 3s364ms 04 4 12s514ms 3s128ms 05 6 25s929ms 4s321ms 06 4 9s326ms 2s331ms 07 3 24s528ms 8s176ms 08 5 21s121ms 4s224ms 10 1 1s53ms 1s53ms 11 5 18s621ms 3s724ms 13 1 1s948ms 1s948ms 15 5 17s904ms 3s580ms 16 4 13s764ms 3s441ms 17 6 28s646ms 4s774ms 18 4 25s294ms 6s323ms 19 3 14s587ms 4s862ms 20 4 14s26ms 3s506ms 21 3 13s696ms 4s565ms 22 6 18s963ms 3s160ms 23 3 10s254ms 3s418ms May 27 00 3 8s559ms 2s853ms 01 5 31s510ms 6s302ms 02 1 3s986ms 3s986ms 03 1 5s333ms 5s333ms 04 4 13s227ms 3s306ms 05 3 16s864ms 5s621ms 06 3 14s301ms 4s767ms 07 2 8s410ms 4s205ms 08 4 25s631ms 6s407ms 09 4 17s491ms 4s372ms 10 2 10s290ms 5s145ms 11 3 19s688ms 6s562ms 12 2 8s719ms 4s359ms 13 2 6s891ms 3s445ms 14 1 6s490ms 6s490ms 15 4 15s226ms 3s806ms 16 2 11s126ms 5s563ms 17 2 40s535ms 20s267ms 18 3 4s991ms 1s663ms 19 5 14s350ms 2s870ms 20 5 13s709ms 2s741ms 21 1 4s809ms 4s809ms 22 3 15s231ms 5s77ms 23 5 25s916ms 5s183ms May 28 00 1 21s490ms 21s490ms 01 2 7s723ms 3s861ms 03 3 9s975ms 3s325ms 05 5 15s104ms 3s20ms 06 1 5s479ms 5s479ms 08 2 5s57ms 2s528ms 09 1 5s971ms 5s971ms 10 4 14s178ms 3s544ms 11 2 3s953ms 1s976ms 12 1 5s790ms 5s790ms 13 1 3s115ms 3s115ms 14 1 6s482ms 6s482ms 15 2 7s311ms 3s655ms 16 3 10s83ms 3s361ms 17 4 20s656ms 5s164ms 18 2 8s549ms 4s274ms 19 6 10s871ms 1s811ms 21 4 9s959ms 2s489ms 22 4 10s309ms 2s577ms 23 2 3s199ms 1s599ms May 29 00 3 13s239ms 4s413ms 01 5 29s154ms 5s830ms 02 2 10s102ms 5s51ms 03 3 7s876ms 2s625ms 04 1 2s193ms 2s193ms 05 5 21s382ms 4s276ms 06 1 13s437ms 13s437ms 07 2 8s764ms 4s382ms 08 3 20s998ms 6s999ms 09 3 8s387ms 2s795ms 10 1 26s919ms 26s919ms 11 3 13s886ms 4s628ms 12 1 1s381ms 1s381ms 13 4 19s386ms 4s846ms 14 3 8s207ms 2s735ms 15 2 7s732ms 3s866ms 16 2 12s324ms 6s162ms 17 1 2s694ms 2s694ms 18 3 12s455ms 4s151ms 19 54 31m45s 35s292ms 20 99 56m44s 34s388ms 21 93 56m25s 36s404ms 22 96 56m23s 35s245ms 23 62 36m7s 34s953ms May 30 00 1 8s75ms 8s75ms 01 1 1s948ms 1s948ms 02 44 25m12s 34s365ms 03 92 56m51s 37s83ms 04 98 56m22s 34s511ms 05 85 49m52s 35s200ms 06 93 56m 36s130ms 07 96 53m54s 33s695ms 08 99 56m29s 34s234ms 09 99 56m27s 34s214ms 10 100 57m19s 34s396ms 11 92 56m 36s524ms 12 91 56m41s 37s375ms 13 100 57m5s 34s255ms 14 97 56m50s 35s160ms 15 96 56m29s 35s302ms 16 95 56m37s 35s758ms 17 96 56m14s 35s151ms 18 97 56m43s 35s88ms 19 97 56m49s 35s147ms 20 100 56m38s 33s987ms 21 95 56m25s 35s634ms 22 96 57m11s 35s744ms 23 96 56m19s 35s202ms May 31 00 96 56m51s 35s533ms 01 97 56m28s 34s937ms 02 94 56m47s 36s252ms 03 93 56m27s 36s424ms 04 94 56m41s 36s181ms 05 59 34m12s 34s781ms 07 2 8s501ms 4s250ms 08 2 6s767ms 3s383ms 09 2 3s815ms 1s907ms 10 1 6s64ms 6s64ms 11 2 3s104ms 1s552ms 12 2 8s734ms 4s367ms 13 2 10s780ms 5s390ms 14 2 9s739ms 4s869ms 15 1 2s668ms 2s668ms 17 2 8s331ms 4s165ms 18 1 7s982ms 7s982ms 20 3 11s84ms 3s694ms 21 1 5s2ms 5s2ms 22 2 13s520ms 6s760ms 23 1 6s383ms 6s383ms Jun 01 00 3 11s369ms 3s789ms 02 4 31s140ms 7s785ms 03 3 10s739ms 3s579ms 04 1 5s152ms 5s152ms 05 1 3s136ms 3s136ms 06 2 9s48ms 4s524ms 07 1 4s925ms 4s925ms 08 4 21s59ms 5s264ms 10 3 11s959ms 3s986ms 13 2 4s624ms 2s312ms 14 5 23s824ms 4s764ms 15 2 8s419ms 4s209ms 16 1 4s949ms 4s949ms 17 2 11s601ms 5s800ms 18 3 9s187ms 3s62ms 19 1 6s567ms 6s567ms 21 2 5s871ms 2s935ms 22 4 19s95ms 4s773ms 23 1 4s723ms 4s723ms [ User: pubeu - Total duration: 21h17m36s - Times executed: 2274 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2064774') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 8842450;
Date: 2024-05-30 10:42:49 Duration: 54s858ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2069554') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 1549650;
Date: 2024-05-29 22:08:24 Duration: 45s83ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2069554') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 1541300;
Date: 2024-05-30 03:29:25 Duration: 43s243ms Database: ctdprd51 User: pubeu Bind query: yes
17 4s7ms 33m14s 13s525ms 218 49m8s select g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(r.acc_txt, ? order by r.acc_txt) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id group by g.nm, g.acc_txt, d.nm, d.acc_db_cd || ? || d.acc_txt, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ? order by a.action_type_nm) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by g.nm, d.nm;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration May 30 12 218 49m8s 13s525ms [ User: qaeu - Total duration: 33m14s - Times executed: 1 ]
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-05-30 12:04:32 Duration: 33m14s Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-05-30 12:23:22 Duration: 5s874ms Bind query: yes
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SELECT /* AllGDRelationsDAO */ g.nm "GeneSymbol", g.acc_txt "GeneID", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(r.acc_txt, '|' ORDER BY r.acc_txt) "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id GROUP BY g.nm, g.acc_txt, d.nm, d.acc_db_cd || ':' || d.acc_txt, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|' ORDER BY a.action_type_nm) FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY g.nm, d.nm;
Date: 2024-05-30 12:23:00 Duration: 5s833ms Bind query: yes
18 1s60ms 44s667ms 7s654ms 78 9m57s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration May 26 03 1 3s217ms 3s217ms 04 1 1s86ms 1s86ms 05 2 2s190ms 1s95ms 06 1 1s521ms 1s521ms 12 1 1s82ms 1s82ms May 27 04 1 3s155ms 3s155ms 05 6 13s764ms 2s294ms 10 1 1s610ms 1s610ms 18 5 11s78ms 2s215ms 19 2 2s604ms 1s302ms May 28 02 3 4s732ms 1s577ms 06 3 4s688ms 1s562ms 08 2 2s588ms 1s294ms 09 2 3s743ms 1s871ms 12 5 1m3s 12s748ms 15 1 11s703ms 11s703ms May 29 00 1 26s514ms 26s514ms 03 1 1s563ms 1s563ms 04 2 4s603ms 2s301ms 05 3 44s229ms 14s743ms 07 1 3s257ms 3s257ms 10 2 3s665ms 1s832ms 19 2 2s825ms 1s412ms May 30 02 3 10s512ms 3s504ms 05 1 44s667ms 44s667ms 08 1 1s364ms 1s364ms 09 1 1s935ms 1s935ms 16 1 12s376ms 12s376ms 21 1 14s998ms 14s998ms May 31 00 1 3s265ms 3s265ms 05 2 3s721ms 1s860ms 09 7 4m9s 35s625ms 10 1 1s591ms 1s591ms 11 1 3s190ms 3s190ms 19 3 4s241ms 1s413ms Jun 01 02 1 1s170ms 1s170ms 08 1 1s456ms 1s456ms 09 1 1s937ms 1s937ms 20 1 7s298ms 7s298ms 22 2 14s733ms 7s366ms [ User: pubeu - Total duration: 6m57s - Times executed: 43 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2069554') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-05-30 05:49:17 Duration: 44s667ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2076831') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-05-31 09:01:10 Duration: 41s522ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2076831') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-05-31 09:01:06 Duration: 39s32ms Database: ctdprd51 User: pubeu Bind query: yes
19 1s 6s123ms 4s507ms 256 19m13s select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration May 26 01 1 4s572ms 4s572ms 02 1 4s787ms 4s787ms 03 2 9s74ms 4s537ms 05 2 9s816ms 4s908ms 06 4 17s496ms 4s374ms 08 1 5s196ms 5s196ms 10 3 12s903ms 4s301ms 13 3 12s833ms 4s277ms 15 3 15s132ms 5s44ms 17 4 17s996ms 4s499ms 18 2 8s110ms 4s55ms 19 1 4s424ms 4s424ms 20 2 8s354ms 4s177ms 22 2 9s527ms 4s763ms 23 2 9s211ms 4s605ms May 27 01 1 4s585ms 4s585ms 02 2 9s354ms 4s677ms 04 2 8s646ms 4s323ms 06 1 5s155ms 5s155ms 07 2 9s315ms 4s657ms 08 1 4s556ms 4s556ms 09 4 19s66ms 4s766ms 11 1 5s255ms 5s255ms 12 1 4s970ms 4s970ms 13 2 8s890ms 4s445ms 16 2 9s856ms 4s928ms 18 1 4s695ms 4s695ms 20 1 5s494ms 5s494ms 21 3 13s858ms 4s619ms 22 3 14s387ms 4s795ms 23 1 4s531ms 4s531ms May 28 01 4 15s976ms 3s994ms 03 6 24s991ms 4s165ms 04 4 18s175ms 4s543ms 05 1 4s355ms 4s355ms 06 1 4s629ms 4s629ms 07 1 4s720ms 4s720ms 08 4 18s934ms 4s733ms 09 4 19s129ms 4s782ms 10 1 4s441ms 4s441ms 11 4 17s883ms 4s470ms 12 1 4s494ms 4s494ms 13 5 25s139ms 5s27ms 14 3 15s234ms 5s78ms 15 2 8s876ms 4s438ms 16 2 9s182ms 4s591ms 17 1 5s82ms 5s82ms 22 1 4s299ms 4s299ms 23 4 18s734ms 4s683ms May 29 01 2 9s160ms 4s580ms 02 1 4s236ms 4s236ms 03 4 18s809ms 4s702ms 04 2 9s554ms 4s777ms 05 2 10s255ms 5s127ms 06 2 9s227ms 4s613ms 07 1 4s521ms 4s521ms 08 3 14s27ms 4s675ms 09 2 9s273ms 4s636ms 10 3 13s742ms 4s580ms 13 4 17s827ms 4s456ms 14 6 30s712ms 5s118ms 16 2 5s253ms 2s626ms 17 2 10s115ms 5s57ms 20 1 1s30ms 1s30ms 22 6 30s459ms 5s76ms 23 1 4s358ms 4s358ms May 30 00 1 4s968ms 4s968ms 02 2 2s40ms 1s20ms 03 2 10s474ms 5s237ms 04 1 4s511ms 4s511ms 05 1 1s270ms 1s270ms 06 1 1s88ms 1s88ms 08 2 10s40ms 5s20ms 09 2 10s881ms 5s440ms 10 3 10s732ms 3s577ms 12 1 5s294ms 5s294ms 14 1 5s171ms 5s171ms 15 1 5s35ms 5s35ms 17 2 8s492ms 4s246ms 18 4 18s917ms 4s729ms 20 1 4s796ms 4s796ms 22 1 5s94ms 5s94ms 23 1 1s37ms 1s37ms May 31 00 1 5s96ms 5s96ms 01 3 14s843ms 4s947ms 04 4 16s52ms 4s13ms 05 2 5s809ms 2s904ms 07 2 9s515ms 4s757ms 08 3 13s567ms 4s522ms 09 1 4s550ms 4s550ms 11 1 5s83ms 5s83ms 12 1 5s159ms 5s159ms 13 2 10s253ms 5s126ms 15 1 4s932ms 4s932ms 16 1 4s687ms 4s687ms 17 3 15s832ms 5s277ms 18 3 15s134ms 5s44ms 19 2 6s297ms 3s148ms 20 1 1s8ms 1s8ms 21 1 4s781ms 4s781ms 22 2 11s243ms 5s621ms 23 9 46s24ms 5s113ms Jun 01 04 2 5s896ms 2s948ms 05 2 5s966ms 2s983ms 06 2 10s658ms 5s329ms 07 5 25s529ms 5s105ms 09 1 4s854ms 4s854ms 11 1 1s18ms 1s18ms 12 1 4s763ms 4s763ms 13 1 4s763ms 4s763ms 14 5 21s43ms 4s208ms 16 2 10s1ms 5s 17 2 10s814ms 5s407ms 18 1 1s102ms 1s102ms 19 1 5s380ms 5s380ms 20 1 1s35ms 1s35ms 21 1 5s538ms 5s538ms 22 3 15s924ms 5s308ms 23 1 1s5ms 1s5ms [ User: pubeu - Total duration: 8m45s - Times executed: 115 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1254230' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-05-30 09:50:55 Duration: 6s123ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1351228' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-05-31 22:31:20 Duration: 5s856ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1303296' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-05-28 01:17:03 Duration: 5s847ms Bind query: yes
20 1s6ms 12s15ms 4s117ms 49 3m21s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes desc, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration May 26 00 1 1s214ms 1s214ms 01 1 1s6ms 1s6ms 02 1 5s151ms 5s151ms 06 1 1s20ms 1s20ms 11 1 4s582ms 4s582ms 17 1 5s458ms 5s458ms 19 2 7s427ms 3s713ms 20 1 4s749ms 4s749ms 21 2 6s850ms 3s425ms May 27 01 1 12s15ms 12s15ms 03 1 1s278ms 1s278ms 08 1 6s532ms 6s532ms 17 1 4s260ms 4s260ms 22 1 1s251ms 1s251ms May 28 03 1 6s121ms 6s121ms 07 1 1s829ms 1s829ms 09 1 5s879ms 5s879ms 16 3 10s66ms 3s355ms 18 1 5s778ms 5s778ms 19 1 6s387ms 6s387ms 23 1 2s612ms 2s612ms May 29 05 3 12s572ms 4s190ms 06 1 4s882ms 4s882ms 16 1 6s124ms 6s124ms May 30 01 2 5s833ms 2s916ms 18 2 5s601ms 2s800ms May 31 04 1 1s963ms 1s963ms 10 2 7s118ms 3s559ms 15 1 1s970ms 1s970ms 17 1 2s528ms 2s528ms 20 1 6s699ms 6s699ms Jun 01 02 1 4s621ms 4s621ms 06 2 12s894ms 6s447ms 14 1 6s966ms 6s966ms 16 2 13s142ms 6s571ms 19 1 1s367ms 1s367ms 22 1 2s765ms 2s765ms 23 1 3s208ms 3s208ms [ User: pubeu - Total duration: 1m32s - Times executed: 24 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2070029') ORDER BY actionTypes DESC, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-05-27 01:43:23 Duration: 12s15ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2080358') ORDER BY actionTypes DESC, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-01 16:04:23 Duration: 7s118ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2079933') ORDER BY actionTypes DESC, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-01 06:16:59 Duration: 6s970ms Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 3s525ms 2 1s762ms 1s762ms 1s762ms select distinct ptr.phenotype_id, ptr.term_id, i.action_type_nm, i.action_type_cd, i.action_degree_type_nm, i.action_degree_type_cd from pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.IXN_AXN i where ptr.ixn_id = i.ixn_id;Times Reported Time consuming bind #1
Day Hour Count Duration Avg duration Jun 01 23 2 3s525ms 1s762ms -
select distinct ptr.phenotype_id, ptr.term_id, i.action_type_nm, i.action_type_cd, i.action_degree_type_nm, i.action_degree_type_cd from pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.IXN_AXN i where ptr.ixn_id = i.ixn_id;
Date: 2024-05-29 23:45:11 Duration: 1s762ms Database: postgres
2 2s138ms 2 1s69ms 1s69ms 1s69ms SELECT /* GeneDiseaseChemsDAO */ ;Times Reported Time consuming bind #2
Day Hour Count Duration Avg duration 22 2 2s138ms 1s69ms -
SELECT /* GeneDiseaseChemsDAO */ ;
Date: 2024-05-27 23:17:49 Duration: 1s69ms Database: postgres parameters: $1 = '2066403'
3 0ms 288 0ms 0ms 0ms ;Times Reported Time consuming bind #3
Day Hour Count Duration Avg duration May 26 02 4 0ms 0ms 05 2 0ms 0ms 07 6 0ms 0ms 08 8 0ms 0ms 09 10 0ms 0ms May 27 00 1 0ms 0ms 06 6 0ms 0ms 07 14 0ms 0ms 08 8 0ms 0ms 14 8 0ms 0ms 15 2 0ms 0ms May 28 05 12 0ms 0ms 06 16 0ms 0ms 07 2 0ms 0ms 09 2 0ms 0ms 10 6 0ms 0ms 11 10 0ms 0ms 12 6 0ms 0ms 13 4 0ms 0ms 14 2 0ms 0ms 15 4 0ms 0ms 17 2 0ms 0ms May 29 06 4 0ms 0ms 07 26 0ms 0ms 08 10 0ms 0ms 09 2 0ms 0ms 10 6 0ms 0ms 11 2 0ms 0ms 17 2 0ms 0ms 18 2 0ms 0ms May 30 01 1 0ms 0ms 04 6 0ms 0ms 05 2 0ms 0ms 06 8 0ms 0ms 07 10 0ms 0ms 11 2 0ms 0ms May 31 06 12 0ms 0ms 07 12 0ms 0ms 10 9 0ms 0ms 12 6 0ms 0ms 13 9 0ms 0ms 14 3 0ms 0ms 16 9 0ms 0ms 17 9 0ms 0ms Jun 02 03 1 0ms 0ms [ User: pubeu - Total duration: 5m48s - Times executed: 156 ]
[ User: qaeu - Total duration: 7s803ms - Times executed: 2 ]
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;
Date: Duration: 0ms Database: postgres parameters: $1 = '2075389', $2 = '2075389'
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Events
Log levels
Key values
- 132,849 Log entries
Events distribution
Key values
- 0 PANIC entries
- 7 FATAL entries
- 76 ERROR entries
- 1297 WARNING entries
Most Frequent Errors/Events
Key values
- 1,024 Max number of times the same event was reported
- 1,380 Total events found
Rank Times reported Error 1 1,024 WARNING: skipping "..." --- only table or database owner can vacuum it
Times Reported Most Frequent Error / Event #1
Day Hour Count May 30 03 1,024 2 224 WARNING: skipping "..." --- only superuser or database owner can vacuum it
Times Reported Most Frequent Error / Event #2
Day Hour Count May 30 03 224 3 43 WARNING: skipping "..." --- only superuser can vacuum it
Times Reported Most Frequent Error / Event #3
Day Hour Count May 30 03 43 4 42 ERROR: syntax error in ts"..."
Times Reported Most Frequent Error / Event #4
Day Hour Count May 26 00 1 23 1 May 27 13 1 May 28 12 1 14 1 17 2 21 1 22 1 May 29 01 1 06 2 07 1 09 1 12 2 16 1 19 1 May 30 08 2 21 1 23 1 May 31 00 1 04 1 06 1 07 1 10 1 11 2 18 2 22 1 Jun 01 00 1 05 2 13 1 15 1 16 2 23 3 - ERROR: syntax error in ts"エーザイ & ユベラNソフトカプセル200MG 販売"
- ERROR: syntax error in ts"ロキソニン 製薬会社"
- ERROR: syntax error in ts"エーザイ & ユベラNソフトカプセル200MG 販売"
Statement: SELECT /* GeneBasicQueryDAO */ sq.* ,COUNT(*) OVER() fullRowCount FROM ( SELECT /* label */ t.acc_txt acc ,'name:' || t.nm accQueryStr ,t.nm ,t.nm_html nmHtml ,t.secondary_nm secondaryNm ,l.nm matchedNm ,lt.nm_display matchedType ,CASE WHEN lt.nm_display='Symbol' THEN true ELSE false END isNameMatch ,CASE WHEN lt.nm_display='Name' THEN true ELSE false END isSecondaryNameMatch ,t.has_chems hasChems ,t.has_diseases hasDiseases ,t.has_exposures hasExposures ,CASE WHEN UPPER(l.nm) = $1 THEN 1 ELSE 2 END relevance ,t.nm_sort ,t.id ,t.has_phenotypes hasPhenotypes FROM term t INNER JOIN term_label l ON l.term_id = t.id INNER JOIN term_label_type lt ON l.term_label_type_id = lt.id WHERE l.object_type_id = 4 AND t.object_type_id = 4 AND l.id IN( SELECT FIRST_VALUE(i.id) OVER(PARTITION BY i.term_id ORDER BY it.priority_seq, i.nm) FROM term_label i INNER JOIN term_label_type it ON i.term_label_type_id = it.id WHERE i.object_type_id = 4 AND i.nm_fts @@ to_tsquery('common.english_nostops', $2) ) UNION ALL SELECT /* acc */ t.acc_txt acc ,'name:' || t.nm accQueryStr ,t.nm ,t.nm_html nmHtml ,t.secondary_nm secondaryNm ,l.acc_txt matchednm ,'Accession' matchedtype ,false isNameMatch ,false isSecondaryNameMatch ,t.has_chems hasChems ,t.has_diseases hasDiseases ,t.has_exposures hasExposures ,1 relevance ,t.nm_sort ,t.id ,t.has_phenotypes hasPhenotypes FROM db_link l INNER JOIN term t ON l.object_id = t.id WHERE l.type_cd = 'A' AND l.object_type_id = 4 AND (upper( l.acc_txt ) = $3 OR upper( l.acc_txt ) = $4 OR upper( l.acc_txt ) = $5 ) ORDER BY 13,14 ) sq LIMIT 50
Date: 2024-05-26 00:44:10
Statement: SELECT /* GoBasicQueryDAO */ sq.* ,COUNT(*) OVER() fullRowCount FROM ( SELECT /* label */ n.acc_txt acc ,n.acc_txt accQueryStr ,n.nm ,n.nm_html nmHtml ,l.nm matchednm ,lt.nm_display matchedtype ,CASE WHEN lt.nm_display='Name' THEN true ELSE false END isNameMatch ,d.nm rankNm ,CASE WHEN UPPER(l.nm) = $1 THEN 1 ELSE 2 END relevance ,n.nm_sort ,n.object_id id ,n.has_genes hasGenes ,n.has_diseases hasDiseases ,n.has_exposures hasExposures ,n.has_phenotypes hasPhenotypes FROM dag_node n INNER JOIN term_label l ON l.term_id = n.object_id INNER JOIN term_label_type lt ON l.term_label_type_id = lt.id INNER JOIN dag d ON n.dag_id = d.id WHERE l.object_type_id = 5 AND l.id IN( SELECT FIRST_VALUE(i.id) OVER (PARTITION BY i.term_id ORDER BY it.priority_seq, i.nm) FROM term_label i INNER JOIN term_label_type it ON i.term_label_type_id = it.id WHERE i.object_type_id = 5 AND i.nm_fts @@ to_tsquery('common.english_nostops', $2) ) UNION ALL SELECT /* acc */ n.acc_txt acc ,n.acc_txt accQueryStr ,n.nm ,n.nm_html nmHtml ,n.acc_txt matchednm ,'Accession' matchedtype ,false isNameMatch ,d.nm rankNm ,1 relevance ,n.nm_sort ,n.object_id id ,n.has_genes hasGenes ,n.has_diseases hasDiseases ,n.has_exposures hasExposures ,n.has_phenotypes hasPhenotypes FROM db_link l INNER JOIN dag_node n ON l.object_id = n.object_id INNER JOIN dag d ON n.dag_id = d.id WHERE l.type_cd = 'A' AND l.object_type_id = 5 AND (upper( l.acc_txt ) = $3 ) ORDER BY 9, 10 ) sq LIMIT 50
Date: 2024-05-26 23:41:55
Statement: SELECT /* GoBasicQueryDAO */ sq.* ,COUNT(*) OVER() fullRowCount FROM ( SELECT /* label */ n.acc_txt acc ,n.acc_txt accQueryStr ,n.nm ,n.nm_html nmHtml ,l.nm matchednm ,lt.nm_display matchedtype ,CASE WHEN lt.nm_display='Name' THEN true ELSE false END isNameMatch ,d.nm rankNm ,CASE WHEN UPPER(l.nm) = $1 THEN 1 ELSE 2 END relevance ,n.nm_sort ,n.object_id id ,n.has_genes hasGenes ,n.has_diseases hasDiseases ,n.has_exposures hasExposures ,n.has_phenotypes hasPhenotypes FROM dag_node n INNER JOIN term_label l ON l.term_id = n.object_id INNER JOIN term_label_type lt ON l.term_label_type_id = lt.id INNER JOIN dag d ON n.dag_id = d.id WHERE l.object_type_id = 5 AND l.id IN( SELECT FIRST_VALUE(i.id) OVER (PARTITION BY i.term_id ORDER BY it.priority_seq, i.nm) FROM term_label i INNER JOIN term_label_type it ON i.term_label_type_id = it.id WHERE i.object_type_id = 5 AND i.nm_fts @@ to_tsquery('common.english_nostops', $2) ) UNION ALL SELECT /* acc */ n.acc_txt acc ,n.acc_txt accQueryStr ,n.nm ,n.nm_html nmHtml ,n.acc_txt matchednm ,'Accession' matchedtype ,false isNameMatch ,d.nm rankNm ,1 relevance ,n.nm_sort ,n.object_id id ,n.has_genes hasGenes ,n.has_diseases hasDiseases ,n.has_exposures hasExposures ,n.has_phenotypes hasPhenotypes FROM db_link l INNER JOIN dag_node n ON l.object_id = n.object_id INNER JOIN dag d ON n.dag_id = d.id WHERE l.type_cd = 'A' AND l.object_type_id = 5 AND (upper( l.acc_txt ) = $3 OR upper( l.acc_txt ) = $4 OR upper( l.acc_txt ) = $5 ) ORDER BY 9, 10 ) sq LIMIT 50
Date: 2024-05-27 13:54:10 Database: ctdprd51 Application: User: pubeu Remote:
5 13 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #5
Day Hour Count May 28 19 3 20 3 May 30 17 4 19 3 6 8 LOG: could not receive data from client: Connection reset by peer
Times Reported Most Frequent Error / Event #6
Day Hour Count May 28 13 4 May 30 11 3 May 31 09 1 7 6 WARNING: there is no transaction in progress
Times Reported Most Frequent Error / Event #7
Day Hour Count May 30 03 2 05 3 06 1 8 5 FATAL: connection to client lost
Times Reported Most Frequent Error / Event #8
Day Hour Count May 27 11 1 May 29 21 1 May 30 11 1 May 31 06 1 09 1 - FATAL: connection to client lost
Statement: SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm ,d.acc_txt diseaseAcc ,d.acc_db_cd diseaseAccDbCd ,d.id diseaseId ,g.nm geneSymbol ,g.acc_txt geneAcc ,g.acc_db_cd geneAccDbCd ,g.id geneId ,gd.network_score networkScore ,gd.indirect_chem_qty inferredCount ,gd.reference_qty referenceCount ,gd.exposure_reference_qty exposureReferenceCount ,CASE WHEN gd.curated_reference_qty > 0 THEN (SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN (SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = $1) ORDER BY actionTypes ,gd.network_score DESC NULLS LAST ,g.nm_sort ,d.nm_sort
Date: 2024-05-31 09:12:24
9 4 LOG: could not send data to client: Broken pipe
Times Reported Most Frequent Error / Event #9
Day Hour Count May 27 11 1 May 29 21 1 May 31 06 1 09 1 - ERROR: could not send data to client: Broken pipe
Statement: SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm ,d.acc_txt diseaseAcc ,d.acc_db_cd diseaseAccDbCd ,d.id diseaseId ,g.nm geneSymbol ,g.acc_txt geneAcc ,g.acc_db_cd geneAccDbCd ,g.id geneId ,gd.network_score networkScore ,gd.indirect_chem_qty inferredCount ,gd.reference_qty referenceCount ,gd.exposure_reference_qty exposureReferenceCount ,CASE WHEN gd.curated_reference_qty > 0 THEN (SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN (SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = $1) ORDER BY actionTypes ,gd.network_score DESC NULLS LAST ,g.nm_sort ,d.nm_sort
Date: 2024-05-31 09:12:24 Database: ctdprd51 Application: User: pubeu Remote:
10 2 FATAL: canceling authentication due to timeout
Times Reported Most Frequent Error / Event #10
Day Hour Count May 31 09 2 11 2 ERROR: syntax error at or near "..."
Times Reported Most Frequent Error / Event #11
Day Hour Count May 29 06 2 - ERROR: syntax error at or near "," at character 22
- ERROR: syntax error at or near "m" at character 1
Statement: select ixn_id, ,reference_acc_txt ,taxon_acc_txt ,pubTerm.nm ,get_ixn_prose( ixn_id ) ,create_by ,create_tm from edit.reference_ixn ri ,pub2.term pubTerm where taxon_acc_txt not in ( select acc_txt from load.term where object_type_id = ( select id from edit.object_type where cd = 'taxon' ) ) and pubTerm.acc_txt = ri.taxon_acc_txt and object_type_id = ( select id from edit.object_type where cd = 'taxon' ) and taxon_acc_txt is not null and taxon_acc_txt <> ''
Date: 2024-05-29 06:39:07 Database: ctdprd51 Application: pgAdmin 4 - CONN:2607015 User: edit Remote:
Statement: m
Date: 2024-05-29 06:51:28
12 1 ERROR: zero-length delimited identifier at or near """"
Times Reported Most Frequent Error / Event #12
Day Hour Count May 28 13 1 - ERROR: zero-length delimited identifier at or near """" at character 47
Statement: -- This is the AGGREGATE Report: select nm as ""Underlying Term Name"" ,acc_txt as ""Underlying Term Accession"" ,synonym ,reference_acc_txt ,notes ,create_by ,create_tm from edit.term_label where acc_txt not in ( select acc_txt from pub2.term ) order by acc_txt
Date: 2024-05-28 13:40:03 Database: ctdprd51 Application: pgAdmin 4 - CONN:2607015 User: edit Remote:
13 1 LOG: process ... still waiting for AccessShareLock on relation ... of database ... after ... ms
Times Reported Most Frequent Error / Event #13
Day Hour Count May 29 12 1 - ERROR: process 385623 still waiting for AccessShareLock on relation 2633821 of database 484829 after 1000.071 ms at character 22
Detail: Processes holding the lock: 384692, 757423, 757425, 757424, 757426. Wait queue: 385623.
Statement: select count(*) from edit.db_linkDate: 2024-05-29 12:15:39
14 1 ERROR: operator does not exist: character varying ~~ record
Times Reported Most Frequent Error / Event #14
Day Hour Count May 30 11 1 - ERROR: operator does not exist: character varying ~~ record at character 52
Hint: No operator matches the given name and argument types. You might need to add explicit type casts.
Statement: begin transaction; delete from pub1.img where url like ( '%98530-19-9.png', '%12345.png' )Date: 2024-05-30 11:31:40
15 1 ERROR: canceling statement due to user request
Times Reported Most Frequent Error / Event #15
Day Hour Count May 29 21 1 - ERROR: canceling statement due to user request
Statement: SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = $1;
Date: 2024-05-29 21:29:07
16 1 ERROR: column "..." does not exist
Times Reported Most Frequent Error / Event #16
Day Hour Count May 29 06 1 - ERROR: column "9831364" does not exist at character 80
Statement: select * from reference_ixn where ixn_id = 3212756 and reference_acc_txt = "9831364" and taxon_acc_txt = "10032"
Date: 2024-05-29 06:43:37 Database: ctdprd51 Application: pgAdmin 4 - CONN:422910 User: edit Remote:
17 1 ERROR: missing FROM-clause entry for table "..."
Times Reported Most Frequent Error / Event #17
Day Hour Count May 29 07 1 - ERROR: missing FROM-clause entry for table "i" at character 23
Statement: select get_ixn_prose( i.id ) from ixn where id in ( 6878326 ,6878305 ,3212756 )
Date: 2024-05-29 07:12:40
18 1 LOG: could not send data to client: Connection reset by peer
Times Reported Most Frequent Error / Event #18
Day Hour Count May 30 11 1