-
Global information
- Generated on Wed Oct 29 04:15:03 2025
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20251028
- Parsed 19,255 log entries in 2s
- Log start from 2025-10-28 00:00:01 to 2025-10-28 23:58:26
-
Overview
Global Stats
- 16 Number of unique normalized queries
- 498 Number of queries
- 2h18m30s Total query duration
- 2025-10-28 00:03:14 First query
- 2025-10-28 23:22:50 Last query
- 2 queries/s at 2025-10-28 05:21:41 Query peak
- 2h18m30s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 2h18m30s Execute total duration
- 7 Number of events
- 3 Number of unique normalized events
- 4 Max number of times the same event was reported
- 0 Number of cancellation
- 10 Total number of automatic vacuums
- 26 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 2,210 Total number of sessions
- 44 sessions at 2025-10-28 10:57:37 Session peak
- 41d14h58m16s Total duration of sessions
- 27m7s Average duration of sessions
- 0 Average queries per session
- 3s760ms Average queries duration per session
- 27m3s Average idle time per session
- 2,210 Total number of connections
- 9 connections/s at 2025-10-28 05:40:26 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 2 queries/s Query Peak
- 2025-10-28 05:21:41 Date
SELECT Traffic
Key values
- 2 queries/s Query Peak
- 2025-10-28 05:21:41 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 0 queries/s Query Peak
- Date
Queries duration
Key values
- 2h18m30s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Oct 28 00 62 0ms 10m57s 23s596ms 38s146ms 39s720ms 11m11s 01 60 0ms 22s513ms 13s907ms 34s899ms 39s406ms 46s546ms 02 80 0ms 2m 14s 34s739ms 40s415ms 2m26s 03 44 0ms 1m58s 15s868ms 34s296ms 39s666ms 2m19s 04 59 0ms 3m39s 30s132ms 40s90ms 3m47s 7m14s 05 86 0ms 22s116ms 12s467ms 39s936ms 40s786ms 45s27ms 06 78 0ms 21s746ms 12s81ms 33s838ms 34s444ms 39s568ms 07 24 0ms 21s286ms 14s724ms 26s840ms 33s677ms 47s791ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 2 0ms 17s954ms 12s135ms 0ms 6s316ms 17s954ms 13 0 0ms 0ms 0ms 0ms 0ms 0ms 14 0 0ms 0ms 0ms 0ms 0ms 0ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 1 0ms 12s375ms 12s375ms 0ms 0ms 12s375ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 2 0ms 6s424ms 6s407ms 0ms 0ms 12s815ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Oct 28 00 61 0 23s871ms 33s699ms 38s146ms 42s284ms 01 60 0 13s907ms 31s35ms 34s899ms 45s8ms 02 80 0 14s 26s208ms 34s739ms 41s620ms 03 44 0 15s868ms 27s207ms 34s296ms 40s132ms 04 59 0 30s132ms 38s71ms 40s90ms 4m7s 05 86 0 12s467ms 34s105ms 39s936ms 41s222ms 06 78 0 12s81ms 26s183ms 33s838ms 39s416ms 07 24 0 14s724ms 19s741ms 26s840ms 47s791ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 2 0 12s135ms 0ms 0ms 17s954ms 13 0 0 0ms 0ms 0ms 0ms 14 0 0 0ms 0ms 0ms 0ms 15 0 0 0ms 0ms 0ms 0ms 16 1 0 12s375ms 0ms 0ms 12s375ms 17 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 2 0 6s407ms 0ms 0ms 12s815ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Oct 28 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Oct 28 00 0 60 60.00 0.00% 01 0 60 60.00 0.00% 02 0 80 80.00 0.00% 03 0 44 44.00 0.00% 04 0 59 59.00 0.00% 05 0 86 86.00 0.00% 06 0 78 78.00 0.00% 07 0 24 24.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 2 2.00 0.00% 13 0 0 0.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 1 1.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 2 2.00 0.00% Day Hour Count Average / Second Oct 28 00 110 0.03/s 01 113 0.03/s 02 133 0.04/s 03 112 0.03/s 04 116 0.03/s 05 138 0.04/s 06 122 0.03/s 07 100 0.03/s 08 81 0.02/s 09 74 0.02/s 10 82 0.02/s 11 76 0.02/s 12 77 0.02/s 13 77 0.02/s 14 78 0.02/s 15 83 0.02/s 16 77 0.02/s 17 78 0.02/s 18 81 0.02/s 19 79 0.02/s 20 75 0.02/s 21 85 0.02/s 22 80 0.02/s 23 83 0.02/s Day Hour Count Average Duration Average idle time Oct 28 00 110 21m51s 21m38s 01 113 20m56s 20m48s 02 133 18m18s 18m10s 03 111 21m44s 21m38s 04 117 20m59s 20m43s 05 138 17m52s 17m44s 06 122 19m49s 19m41s 07 100 24m 23m56s 08 81 27m45s 27m45s 09 74 31m9s 31m9s 10 77 31m18s 31m18s 11 76 31m6s 31m6s 12 77 32m18s 32m18s 13 77 31m35s 31m35s 14 78 31m24s 31m24s 15 83 29m49s 29m49s 16 77 30m59s 30m59s 17 78 31m13s 31m13s 18 86 53m45s 53m45s 19 79 30m39s 30m39s 20 75 31m11s 31m11s 21 85 27m21s 27m21s 22 80 30m35s 30m35s 23 83 29m12s 29m12s -
Connections
Established Connections
Key values
- 9 connections Connection Peak
- 2025-10-28 05:40:26 Date
Connections per database
Key values
- ctdprd51 Main Database
- 2,210 connections Total
Connections per user
Key values
- pubeu Main User
- 2,210 connections Total
-
Sessions
Simultaneous sessions
Key values
- 44 sessions Session Peak
- 2025-10-28 10:57:37 Date
Histogram of session times
Key values
- 1,794 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 2,210 sessions Total
Sessions per user
Key values
- pubeu Main User
- 2,210 sessions Total
Sessions per host
Key values
- 10.12.5.53 Main Host
- 2,210 sessions Total
-
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 10,934 buffers Checkpoint Peak
- 2025-10-28 05:36:08 Date
- 1094.799 seconds Highest write time
- 0.002 seconds Sync time
Checkpoints Wal files
Key values
- 6 files Wal files usage Peak
- 2025-10-28 05:36:08 Date
Checkpoints distance
Key values
- 193.74 Mo Distance Peak
- 2025-10-28 05:36:08 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Oct 28 00 2,521 252.539s 0.002s 252.634s 01 390 39.044s 0.002s 39.074s 02 470 47.181s 0.002s 47.211s 03 524 52.47s 0.002s 52.5s 04 875 87.526s 0.002s 87.604s 05 11,166 1,118.054s 0.003s 1,118.156s 06 355 35.651s 0.002s 35.681s 07 537 53.876s 0.003s 53.908s 08 6,044 605.382s 0.003s 605.493s 09 339 34.147s 0.002s 34.177s 10 5,937 594.603s 0.002s 594.743s 11 11,141 1,115.582s 0.003s 1,115.707s 12 269 27.116s 0.002s 27.145s 13 135 13.696s 0.002s 13.726s 14 23 2.47s 0.002s 2.5s 15 32 3.371s 0.002s 3.401s 16 47 4.902s 0.002s 4.931s 17 19 2.001s 0.001s 2.017s 18 45 4.711s 0.002s 4.744s 19 17 1.884s 0.002s 1.913s 20 29 3.09s 0.002s 3.119s 21 72 7.376s 0.002s 7.406s 22 69 7.093s 0.002s 7.123s 23 52 5.374s 0.002s 5.404s Day Hour Added Removed Recycled Synced files Longest sync Average sync Oct 28 00 0 0 2 75 0.001s 0.002s 01 0 0 0 43 0.001s 0.002s 02 0 0 0 42 0.001s 0.002s 03 0 0 0 40 0.001s 0.002s 04 0 0 1 46 0.001s 0.002s 05 0 0 6 55 0.001s 0.002s 06 0 0 0 39 0.001s 0.002s 07 0 0 0 74 0.001s 0.002s 08 0 0 4 122 0.001s 0.002s 09 0 0 0 118 0.001s 0.002s 10 0 0 6 126 0.001s 0.002s 11 0 0 2 131 0.001s 0.002s 12 0 0 0 105 0.001s 0.002s 13 0 0 0 60 0.001s 0.002s 14 0 0 0 14 0.001s 0.002s 15 0 0 0 18 0.001s 0.002s 16 0 0 0 17 0.001s 0.002s 17 0 0 0 7 0.001s 0.001s 18 0 0 0 16 0.001s 0.002s 19 0 0 0 14 0.001s 0.002s 20 0 0 0 14 0.001s 0.002s 21 0 0 0 18 0.001s 0.002s 22 0 0 0 18 0.001s 0.002s 23 0 0 0 17 0.001s 0.002s Day Hour Count Avg time (sec) Oct 28 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Oct 28 00 14,704.00 kB 26,798.00 kB 01 1,431.00 kB 21,977.50 kB 02 1,239.50 kB 18,044.50 kB 03 1,660.50 kB 14,902.50 kB 04 2,794.50 kB 12,510.00 kB 05 50,395.50 kB 94,315.00 kB 06 1,085.00 kB 76,615.00 kB 07 1,356.50 kB 62,339.50 kB 08 31,735.50 kB 59,527.00 kB 09 925.50 kB 48,392.00 kB 10 24,434.00 kB 44,844.00 kB 11 35,029.00 kB 62,909.00 kB 12 726.00 kB 51,256.00 kB 13 298.00 kB 41,591.50 kB 14 38.50 kB 33,698.00 kB 15 50.50 kB 27,304.50 kB 16 47.50 kB 22,126.00 kB 17 58.00 kB 18,873.00 kB 18 69.50 kB 16,147.00 kB 19 18.00 kB 13,084.00 kB 20 42.00 kB 10,605.00 kB 21 85.00 kB 8,604.00 kB 22 129.50 kB 6,992.00 kB 23 114.00 kB 5,686.50 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Oct 28 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0.69 sec Highest CPU-cost vacuum
Table pub1.term_set_enrichment
Database ctdprd51 - 2025-10-28 11:04:22 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 0.69 sec Highest CPU-cost vacuum
Table pub1.term_set_enrichment
Database ctdprd51 - 2025-10-28 11:04:22 Date
Analyzes per table
Key values
- pubc.log_query (25) Main table analyzed (database ctdprd51)
- 26 analyzes Total
Vacuums per table
Key values
- pubc.log_query (9) Main table vacuumed on database ctdprd51
- 10 vacuums Total
Tuples removed per table
Key values
- pubc.log_query (34042) Main table with removed tuples on database ctdprd51
- 34042 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Oct 28 00 3 9 01 2 6 02 0 2 03 2 3 04 0 3 05 1 1 06 1 1 07 0 1 08 0 0 09 0 0 10 0 0 11 1 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 - 0.69 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 497 Total read queries
- 0 Total write queries
Queries by database
Key values
- ctdprd51 Main database
- 296 Requests
- 1h31m33s (ctdprd51)
- Main time consuming database
Queries by user
Key values
- pubeu Main user
- 602 Requests
User Request type Count Duration pubc Total 1 10m57s select 1 10m57s pubeu Total 602 2h34m32s select 602 2h34m32s qaeu Total 3 17s437ms select 3 17s437ms unknown Total 414 1h32m5s others 1 6s790ms select 413 1h31m59s Duration by user
Key values
- 2h34m32s (pubeu) Main time consuming user
User Request type Count Duration pubc Total 1 10m57s select 1 10m57s pubeu Total 602 2h34m32s select 602 2h34m32s qaeu Total 3 17s437ms select 3 17s437ms unknown Total 414 1h32m5s others 1 6s790ms select 413 1h31m59s Queries by host
Key values
- unknown Main host
- 1,020 Requests
- 4h17m53s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 497 Requests
- 2h7m32s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2025-10-28 01:51:18 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 333 > 10000ms duration
Slowest individual queries
Rank Duration Query 1 10m57s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2025-10-28 00:10:59 - Database: ctdprd51 - User: pubc - Application: psql ]
2 3m39s SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;[ Date: 2025-10-28 04:05:31 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
3 3m38s SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;[ Date: 2025-10-28 04:07:04 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
4 3m36s SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;[ Date: 2025-10-28 04:07:55 - Bind query: yes ]
5 3m35s SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;[ Date: 2025-10-28 04:10:34 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
6 3m34s SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;[ Date: 2025-10-28 04:02:33 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
7 2m SELECT /* BatchDiseaseGeneAssnsDAO */ 'kidney disease' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2118653) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;[ Date: 2025-10-28 02:54:39 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
8 1m58s SELECT /* BatchDiseaseGeneAssnsDAO */ 'kidney disease' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2118653) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;[ Date: 2025-10-28 03:37:20 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
9 22s513ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 01:43:24 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
10 22s479ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 01:55:41 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
11 22s325ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 02:26:37 - Bind query: yes ]
12 22s223ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 02:19:12 - Bind query: yes ]
13 22s197ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 02:20:52 - Bind query: yes ]
14 22s119ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 04:21:51 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
15 22s116ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 05:47:32 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
16 22s97ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 05:18:23 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
17 22s6ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 02:31:25 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
18 21s919ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 02:40:29 - Bind query: yes ]
19 21s907ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 05:38:09 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
20 21s860ms SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;[ Date: 2025-10-28 00:51:49 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 1h42m53s 470 5s11ms 22s513ms 13s134ms select ? AS "Input", phenotypeterm.nm AS "PhenotypeName", phenotypeterm.acc_txt AS "PhenotypeID", diseaseterm.nm AS "DiseaseName", diseaseterm.acc_db_cd || ? || diseaseterm.acc_txt "DiseaseID", ( select string_agg(distinct geneterm.nm, ?) from term geneterm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneterm.id and ptr.via_term_object_type_id = ?) AS "GeneInferenceNetwork", ( select string_agg(distinct chemterm.nm, ?) from term chemterm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemterm.id and ptr.via_term_object_type_id = ?) AS "ChemInferenceNetwork", ( select string_agg(distinct r.acc_txt, ?) from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where (phenotypeterm.id = ?) and diseaseterm.object_type_id = ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Oct 28 00 60 13m18s 13s303ms 01 60 13m54s 13s907ms 02 79 16m39s 12s656ms 03 41 9m27s 13s829ms 04 54 11m32s 12s828ms 05 75 16m45s 13s400ms 06 78 15m42s 12s81ms 07 23 5m33s 14s506ms [ User: pubeu - Total duration: 1h10s - Times executed: 275 ]
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SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;
Date: 2025-10-28 01:43:24 Duration: 22s513ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;
Date: 2025-10-28 01:55:41 Duration: 22s479ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;
Date: 2025-10-28 02:26:37 Duration: 22s325ms Bind query: yes
2 18m5s 5 3m34s 3m39s 3m37s select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like)) ii group by ii.cd;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Oct 28 04 5 18m5s 3m37s [ User: pubeu - Total duration: 14m29s - Times executed: 4 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-10-28 04:05:31 Duration: 3m39s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-10-28 04:07:04 Duration: 3m38s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-10-28 04:07:55 Duration: 3m36s Bind query: yes
3 10m57s 1 10m57s 10m57s 10m57s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Oct 28 00 1 10m57s 10m57s [ User: pubc - Total duration: 10m57s - Times executed: 1 ]
[ Application: psql - Total duration: 10m57s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-10-28 00:10:59 Duration: 10m57s Database: ctdprd51 User: pubc Application: psql
4 3m58s 2 1m58s 2m 1m59s select ? "Input", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( select string_agg(stm.slim_term_nm, ? order by stm.slim_term_nm) from slim_term_mapping stm where stm.mapped_term_id = d.id) "DiseaseCategories", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(distinct r.acc_txt, ?) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id where d.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) group by g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by d.nm_sort, g.nm, "DirectEvidence", c.nm;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Oct 28 02 1 2m 2m 03 1 1m58s 1m58s [ User: pubeu - Total duration: 3m58s - Times executed: 2 ]
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'kidney disease' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2118653) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-10-28 02:54:39 Duration: 2m Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'kidney disease' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2118653) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-10-28 03:37:20 Duration: 1m58s Database: ctdprd51 User: pubeu Bind query: yes
5 23s901ms 3 5s761ms 12s375ms 7s967ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Oct 28 05 2 11s526ms 5s763ms 16 1 12s375ms 12s375ms [ User: pubeu - Total duration: 12s375ms - Times executed: 1 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2113874') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 16:14:40 Duration: 12s375ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 05:18:06 Duration: 5s764ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 05:18:14 Duration: 5s761ms Bind query: yes
6 19s741ms 1 19s741ms 19s741ms 19s741ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gli.term_id gene_id from term_label gli where gli.object_type_id = ? and upper(gli.nm) like ?)))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Oct 28 07 1 19s741ms 19s741ms [ User: pubeu - Total duration: 19s741ms - Times executed: 1 ]
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE 'KRAS')))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-10-28 07:57:19 Duration: 19s741ms Database: ctdprd51 User: pubeu Bind query: yes
7 17s954ms 1 17s954ms 17s954ms 17s954ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Oct 28 12 1 17s954ms 17s954ms [ User: pubeu - Total duration: 17s954ms - Times executed: 1 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2117400') ORDER BY g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 12:17:36 Duration: 17s954ms Database: ctdprd51 User: pubeu Bind query: yes
8 16s476ms 3 5s366ms 5s590ms 5s492ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Oct 28 05 3 16s476ms 5s492ms [ User: pubeu - Total duration: 16s476ms - Times executed: 3 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 50;
Date: 2025-10-28 05:21:44 Duration: 5s590ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 300;
Date: 2025-10-28 05:22:35 Duration: 5s520ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 150;
Date: 2025-10-28 05:21:41 Duration: 5s366ms Database: ctdprd51 User: pubeu Bind query: yes
9 14s610ms 2 7s198ms 7s412ms 7s305ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Oct 28 05 2 14s610ms 7s305ms [ User: qaeu - Total duration: 7s198ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:49:16 Duration: 7s412ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:44:20 Duration: 7s198ms Database: ctdprd51 User: qaeu Bind query: yes
10 14s369ms 2 7s147ms 7s222ms 7s184ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Oct 28 05 2 14s369ms 7s184ms [ User: pubeu - Total duration: 7s222ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:49:24 Duration: 7s222ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:44:28 Duration: 7s147ms Bind query: yes
11 12s815ms 2 6s391ms 6s424ms 6s407ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Oct 28 23 2 12s815ms 6s407ms [ User: pubeu - Total duration: 12s815ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1422417') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-10-28 23:22:50 Duration: 6s424ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1422417') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-10-28 23:22:48 Duration: 6s391ms Database: ctdprd51 User: pubeu Bind query: yes
12 10s134ms 2 5s57ms 5s76ms 5s67ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Oct 28 05 2 10s134ms 5s67ms [ User: qaeu - Total duration: 5s76ms - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1324741)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2025-10-28 05:43:55 Duration: 5s76ms Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1324741)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2025-10-28 05:48:50 Duration: 5s57ms Bind query: yes
13 7s142ms 1 7s142ms 7s142ms 7s142ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Oct 28 03 1 7s142ms 7s142ms [ User: pubeu - Total duration: 7s142ms - Times executed: 1 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1363239' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-10-28 03:31:02 Duration: 7s142ms Database: ctdprd51 User: pubeu Bind query: yes
14 6s790ms 1 6s790ms 6s790ms 6s790ms vacuum analyze log_query_archive;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Oct 28 00 1 6s790ms 6s790ms -
VACUUM ANALYZE log_query_archive;
Date: 2025-10-28 00:11:06 Duration: 6s790ms
15 6s316ms 1 6s316ms 6s316ms 6s316ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from term_label l inner join dag_path dp on l.term_id = dp.ancestor_object_id where upper(l.nm) like ? and l.object_type_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Oct 28 12 1 6s316ms 6s316ms [ User: pubeu - Total duration: 6s316ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE 'HOMO SAPIENS' AND l.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 500;
Date: 2025-10-28 12:22:08 Duration: 6s316ms Database: ctdprd51 User: pubeu Bind query: yes
16 5s785ms 1 5s785ms 5s785ms 5s785ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) and exists ( select ? from gene_chem_reference_axn gcra where gcr.id = gcra.gene_chem_reference_id and gcra.action_type_nm in ( select ac.nm from action_type ap, action_type ac where ac.subset_left_no between ap.subset_left_no and ap.subset_right_no and (ap.nm = ?))) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Oct 28 03 1 5s785ms 5s785ms [ User: pubeu - Total duration: 5s785ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) AND exists ( SELECT 1 FROM gene_chem_reference_axn gcra WHERE gcr.id = gcra.gene_chem_reference_id AND gcra.action_type_nm IN ( SELECT ac.nm FROM action_type ap, action_type ac WHERE ac.subset_left_no BETWEEN ap.subset_left_no AND ap.subset_right_no AND (ap.nm = 'expression'))) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-10-28 03:12:20 Duration: 5s785ms Database: ctdprd51 User: pubeu Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 470 1h42m53s 5s11ms 22s513ms 13s134ms select ? AS "Input", phenotypeterm.nm AS "PhenotypeName", phenotypeterm.acc_txt AS "PhenotypeID", diseaseterm.nm AS "DiseaseName", diseaseterm.acc_db_cd || ? || diseaseterm.acc_txt "DiseaseID", ( select string_agg(distinct geneterm.nm, ?) from term geneterm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneterm.id and ptr.via_term_object_type_id = ?) AS "GeneInferenceNetwork", ( select string_agg(distinct chemterm.nm, ?) from term chemterm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemterm.id and ptr.via_term_object_type_id = ?) AS "ChemInferenceNetwork", ( select string_agg(distinct r.acc_txt, ?) from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where (phenotypeterm.id = ?) and diseaseterm.object_type_id = ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Oct 28 00 60 13m18s 13s303ms 01 60 13m54s 13s907ms 02 79 16m39s 12s656ms 03 41 9m27s 13s829ms 04 54 11m32s 12s828ms 05 75 16m45s 13s400ms 06 78 15m42s 12s81ms 07 23 5m33s 14s506ms [ User: pubeu - Total duration: 1h10s - Times executed: 275 ]
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SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;
Date: 2025-10-28 01:43:24 Duration: 22s513ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;
Date: 2025-10-28 01:55:41 Duration: 22s479ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;
Date: 2025-10-28 02:26:37 Duration: 22s325ms Bind query: yes
2 5 18m5s 3m34s 3m39s 3m37s select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like)) ii group by ii.cd;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Oct 28 04 5 18m5s 3m37s [ User: pubeu - Total duration: 14m29s - Times executed: 4 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-10-28 04:05:31 Duration: 3m39s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-10-28 04:07:04 Duration: 3m38s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-10-28 04:07:55 Duration: 3m36s Bind query: yes
3 3 23s901ms 5s761ms 12s375ms 7s967ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Oct 28 05 2 11s526ms 5s763ms 16 1 12s375ms 12s375ms [ User: pubeu - Total duration: 12s375ms - Times executed: 1 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2113874') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 16:14:40 Duration: 12s375ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 05:18:06 Duration: 5s764ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 05:18:14 Duration: 5s761ms Bind query: yes
4 3 16s476ms 5s366ms 5s590ms 5s492ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Oct 28 05 3 16s476ms 5s492ms [ User: pubeu - Total duration: 16s476ms - Times executed: 3 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 50;
Date: 2025-10-28 05:21:44 Duration: 5s590ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 300;
Date: 2025-10-28 05:22:35 Duration: 5s520ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 150;
Date: 2025-10-28 05:21:41 Duration: 5s366ms Database: ctdprd51 User: pubeu Bind query: yes
5 2 3m58s 1m58s 2m 1m59s select ? "Input", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( select string_agg(stm.slim_term_nm, ? order by stm.slim_term_nm) from slim_term_mapping stm where stm.mapped_term_id = d.id) "DiseaseCategories", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(distinct r.acc_txt, ?) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id where d.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) group by g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by d.nm_sort, g.nm, "DirectEvidence", c.nm;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Oct 28 02 1 2m 2m 03 1 1m58s 1m58s [ User: pubeu - Total duration: 3m58s - Times executed: 2 ]
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'kidney disease' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2118653) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-10-28 02:54:39 Duration: 2m Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'kidney disease' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2118653) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-10-28 03:37:20 Duration: 1m58s Database: ctdprd51 User: pubeu Bind query: yes
6 2 14s610ms 7s198ms 7s412ms 7s305ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Oct 28 05 2 14s610ms 7s305ms [ User: qaeu - Total duration: 7s198ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:49:16 Duration: 7s412ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:44:20 Duration: 7s198ms Database: ctdprd51 User: qaeu Bind query: yes
7 2 14s369ms 7s147ms 7s222ms 7s184ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Oct 28 05 2 14s369ms 7s184ms [ User: pubeu - Total duration: 7s222ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:49:24 Duration: 7s222ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:44:28 Duration: 7s147ms Bind query: yes
8 2 12s815ms 6s391ms 6s424ms 6s407ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Oct 28 23 2 12s815ms 6s407ms [ User: pubeu - Total duration: 12s815ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1422417') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-10-28 23:22:50 Duration: 6s424ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1422417') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-10-28 23:22:48 Duration: 6s391ms Database: ctdprd51 User: pubeu Bind query: yes
9 2 10s134ms 5s57ms 5s76ms 5s67ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Oct 28 05 2 10s134ms 5s67ms [ User: qaeu - Total duration: 5s76ms - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1324741)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2025-10-28 05:43:55 Duration: 5s76ms Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1324741)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2025-10-28 05:48:50 Duration: 5s57ms Bind query: yes
10 1 10m57s 10m57s 10m57s 10m57s select maint_query_logs_archive ();Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Oct 28 00 1 10m57s 10m57s [ User: pubc - Total duration: 10m57s - Times executed: 1 ]
[ Application: psql - Total duration: 10m57s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-10-28 00:10:59 Duration: 10m57s Database: ctdprd51 User: pubc Application: psql
11 1 19s741ms 19s741ms 19s741ms 19s741ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gli.term_id gene_id from term_label gli where gli.object_type_id = ? and upper(gli.nm) like ?)))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Oct 28 07 1 19s741ms 19s741ms [ User: pubeu - Total duration: 19s741ms - Times executed: 1 ]
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE 'KRAS')))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-10-28 07:57:19 Duration: 19s741ms Database: ctdprd51 User: pubeu Bind query: yes
12 1 17s954ms 17s954ms 17s954ms 17s954ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Oct 28 12 1 17s954ms 17s954ms [ User: pubeu - Total duration: 17s954ms - Times executed: 1 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2117400') ORDER BY g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 12:17:36 Duration: 17s954ms Database: ctdprd51 User: pubeu Bind query: yes
13 1 7s142ms 7s142ms 7s142ms 7s142ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Oct 28 03 1 7s142ms 7s142ms [ User: pubeu - Total duration: 7s142ms - Times executed: 1 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1363239' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-10-28 03:31:02 Duration: 7s142ms Database: ctdprd51 User: pubeu Bind query: yes
14 1 6s790ms 6s790ms 6s790ms 6s790ms vacuum analyze log_query_archive;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Oct 28 00 1 6s790ms 6s790ms -
VACUUM ANALYZE log_query_archive;
Date: 2025-10-28 00:11:06 Duration: 6s790ms
15 1 6s316ms 6s316ms 6s316ms 6s316ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from term_label l inner join dag_path dp on l.term_id = dp.ancestor_object_id where upper(l.nm) like ? and l.object_type_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Oct 28 12 1 6s316ms 6s316ms [ User: pubeu - Total duration: 6s316ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE 'HOMO SAPIENS' AND l.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 500;
Date: 2025-10-28 12:22:08 Duration: 6s316ms Database: ctdprd51 User: pubeu Bind query: yes
16 1 5s785ms 5s785ms 5s785ms 5s785ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) and exists ( select ? from gene_chem_reference_axn gcra where gcr.id = gcra.gene_chem_reference_id and gcra.action_type_nm in ( select ac.nm from action_type ap, action_type ac where ac.subset_left_no between ap.subset_left_no and ap.subset_right_no and (ap.nm = ?))) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Oct 28 03 1 5s785ms 5s785ms [ User: pubeu - Total duration: 5s785ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) AND exists ( SELECT 1 FROM gene_chem_reference_axn gcra WHERE gcr.id = gcra.gene_chem_reference_id AND gcra.action_type_nm IN ( SELECT ac.nm FROM action_type ap, action_type ac WHERE ac.subset_left_no BETWEEN ap.subset_left_no AND ap.subset_right_no AND (ap.nm = 'expression'))) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-10-28 03:12:20 Duration: 5s785ms Database: ctdprd51 User: pubeu Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 10m57s 10m57s 10m57s 1 10m57s select maint_query_logs_archive ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Oct 28 00 1 10m57s 10m57s [ User: pubc - Total duration: 10m57s - Times executed: 1 ]
[ Application: psql - Total duration: 10m57s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-10-28 00:10:59 Duration: 10m57s Database: ctdprd51 User: pubc Application: psql
2 3m34s 3m39s 3m37s 5 18m5s select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like)) ii group by ii.cd;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Oct 28 04 5 18m5s 3m37s [ User: pubeu - Total duration: 14m29s - Times executed: 4 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-10-28 04:05:31 Duration: 3m39s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-10-28 04:07:04 Duration: 3m38s Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 & HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'FROM & TO & MK10_HUMAN & MAPK10 & P35968 & KDR & TTHY_HUMAN & TTR & CATS_HUMAN & CTSS & GSTP1_HUMAN & GSTP1 & CAH12_HUMAN & CA12 & PNPH_HUMAN & PNP & PDE4B_HUMAN & PDE4B & P07900 &HSP90AA1 & CHLE_HUMAN & BCHE & CAH2_HUMAN & CA2 & Q9NP99 & TREM1 & STS_HUMAN & STS & PYRD_HUMAN & DHODH & O15496 & PLA2G10 & CASP7_HUMAN & CASP7 & Q16539 & MAPK14 & SRC_HUMAN & SRC & SEPR_HUMAN & FAP & P11142 & HSPA8 & CHK1_HUMAN & CHEK1 & ALBU_HUMAN & ALB & CTNA1_HUMAN & CTNNA1 & EST1_HUMAN & CES1 & MK08_HUMAN & MAPK8 & P62937 & PPIA & CAH1_HUMAN & CA1 & P04745 & AMY1A & P04745 & AMY1B & P04745 & AMY1C & BACE1_HUMAN & BACE1 & PRGR_HUMAN & PGR & ESR2_HUMAN & ES') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FROM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TO' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK10_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P35968' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'KDR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTHY_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TTR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CATS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'GSTP1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH12_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA12' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNPH_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PNP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PDE4B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P07900' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSP90AA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHLE_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BCHE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q9NP99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'TREM1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PYRD_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DHODH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'O15496' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PLA2G10' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CASP7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'Q16539' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SRC' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEPR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FAP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P11142' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HSPA8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHK1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEK1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALBU_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ALB' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNA1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTNNA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'EST1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CES1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MK08_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MAPK8' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P62937' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PPIA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CAH1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CA1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1A' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1B' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'P04745' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'AMY1C' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BACE1' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRGR_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PGR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ESR2_HUMAN' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ES')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'FROM' OR upper(l.acc_txt) LIKE 'TO' OR upper(l.acc_txt) LIKE 'MK10_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK10' OR upper(l.acc_txt) LIKE 'P35968' OR upper(l.acc_txt) LIKE 'KDR' OR upper(l.acc_txt) LIKE 'TTHY_HUMAN' OR upper(l.acc_txt) LIKE 'TTR' OR upper(l.acc_txt) LIKE 'CATS_HUMAN' OR upper(l.acc_txt) LIKE 'CTSS' OR upper(l.acc_txt) LIKE 'GSTP1_HUMAN' OR upper(l.acc_txt) LIKE 'GSTP1' OR upper(l.acc_txt) LIKE 'CAH12_HUMAN' OR upper(l.acc_txt) LIKE 'CA12' OR upper(l.acc_txt) LIKE 'PNPH_HUMAN' OR upper(l.acc_txt) LIKE 'PNP' OR upper(l.acc_txt) LIKE 'PDE4B_HUMAN' OR upper(l.acc_txt) LIKE 'PDE4B' OR upper(l.acc_txt) LIKE 'P07900' OR upper(l.acc_txt) LIKE 'HSP90AA1' OR upper(l.acc_txt) LIKE 'CHLE_HUMAN' OR upper(l.acc_txt) LIKE 'BCHE' OR upper(l.acc_txt) LIKE 'CAH2_HUMAN' OR upper(l.acc_txt) LIKE 'CA2' OR upper(l.acc_txt) LIKE 'Q9NP99' OR upper(l.acc_txt) LIKE 'TREM1' OR upper(l.acc_txt) LIKE 'STS_HUMAN' OR upper(l.acc_txt) LIKE 'STS' OR upper(l.acc_txt) LIKE 'PYRD_HUMAN' OR upper(l.acc_txt) LIKE 'DHODH' OR upper(l.acc_txt) LIKE 'O15496' OR upper(l.acc_txt) LIKE 'PLA2G10' OR upper(l.acc_txt) LIKE 'CASP7_HUMAN' OR upper(l.acc_txt) LIKE 'CASP7' OR upper(l.acc_txt) LIKE 'Q16539' OR upper(l.acc_txt) LIKE 'MAPK14' OR upper(l.acc_txt) LIKE 'SRC_HUMAN' OR upper(l.acc_txt) LIKE 'SRC' OR upper(l.acc_txt) LIKE 'SEPR_HUMAN' OR upper(l.acc_txt) LIKE 'FAP' OR upper(l.acc_txt) LIKE 'P11142' OR upper(l.acc_txt) LIKE 'HSPA8' OR upper(l.acc_txt) LIKE 'CHK1_HUMAN' OR upper(l.acc_txt) LIKE 'CHEK1' OR upper(l.acc_txt) LIKE 'ALBU_HUMAN' OR upper(l.acc_txt) LIKE 'ALB' OR upper(l.acc_txt) LIKE 'CTNA1_HUMAN' OR upper(l.acc_txt) LIKE 'CTNNA1' OR upper(l.acc_txt) LIKE 'EST1_HUMAN' OR upper(l.acc_txt) LIKE 'CES1' OR upper(l.acc_txt) LIKE 'MK08_HUMAN' OR upper(l.acc_txt) LIKE 'MAPK8' OR upper(l.acc_txt) LIKE 'P62937' OR upper(l.acc_txt) LIKE 'PPIA' OR upper(l.acc_txt) LIKE 'CAH1_HUMAN' OR upper(l.acc_txt) LIKE 'CA1' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1A' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1B' OR upper(l.acc_txt) LIKE 'P04745' OR upper(l.acc_txt) LIKE 'AMY1C' OR upper(l.acc_txt) LIKE 'BACE1_HUMAN' OR upper(l.acc_txt) LIKE 'BACE1' OR upper(l.acc_txt) LIKE 'PGR' OR upper(l.acc_txt) LIKE 'ESR2_HUMAN' OR upper(l.acc_txt) LIKE 'ES' OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-10-28 04:07:55 Duration: 3m36s Bind query: yes
3 1m58s 2m 1m59s 2 3m58s select ? "Input", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( select string_agg(stm.slim_term_nm, ? order by stm.slim_term_nm) from slim_term_mapping stm where stm.mapped_term_id = d.id) "DiseaseCategories", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(distinct r.acc_txt, ?) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id where d.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) group by g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by d.nm_sort, g.nm, "DirectEvidence", c.nm;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Oct 28 02 1 2m 2m 03 1 1m58s 1m58s [ User: pubeu - Total duration: 3m58s - Times executed: 2 ]
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'kidney disease' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2118653) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-10-28 02:54:39 Duration: 2m Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'kidney disease' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2118653) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-10-28 03:37:20 Duration: 1m58s Database: ctdprd51 User: pubeu Bind query: yes
4 19s741ms 19s741ms 19s741ms 1 19s741ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gli.term_id gene_id from term_label gli where gli.object_type_id = ? and upper(gli.nm) like ?)))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Oct 28 07 1 19s741ms 19s741ms [ User: pubeu - Total duration: 19s741ms - Times executed: 1 ]
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE 'KRAS')))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-10-28 07:57:19 Duration: 19s741ms Database: ctdprd51 User: pubeu Bind query: yes
5 17s954ms 17s954ms 17s954ms 1 17s954ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Oct 28 12 1 17s954ms 17s954ms [ User: pubeu - Total duration: 17s954ms - Times executed: 1 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2117400') ORDER BY g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 12:17:36 Duration: 17s954ms Database: ctdprd51 User: pubeu Bind query: yes
6 5s11ms 22s513ms 13s134ms 470 1h42m53s select ? AS "Input", phenotypeterm.nm AS "PhenotypeName", phenotypeterm.acc_txt AS "PhenotypeID", diseaseterm.nm AS "DiseaseName", diseaseterm.acc_db_cd || ? || diseaseterm.acc_txt "DiseaseID", ( select string_agg(distinct geneterm.nm, ?) from term geneterm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneterm.id and ptr.via_term_object_type_id = ?) AS "GeneInferenceNetwork", ( select string_agg(distinct chemterm.nm, ?) from term chemterm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemterm.id and ptr.via_term_object_type_id = ?) AS "ChemInferenceNetwork", ( select string_agg(distinct r.acc_txt, ?) from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where (phenotypeterm.id = ?) and diseaseterm.object_type_id = ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Oct 28 00 60 13m18s 13s303ms 01 60 13m54s 13s907ms 02 79 16m39s 12s656ms 03 41 9m27s 13s829ms 04 54 11m32s 12s828ms 05 75 16m45s 13s400ms 06 78 15m42s 12s81ms 07 23 5m33s 14s506ms [ User: pubeu - Total duration: 1h10s - Times executed: 275 ]
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SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;
Date: 2025-10-28 01:43:24 Duration: 22s513ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;
Date: 2025-10-28 01:55:41 Duration: 22s479ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BatchDiseasePhenotypeAssnsDAO */ 'go:0006915' AS "Input", phenotypeTerm.nm as "PhenotypeName", phenotypeTerm.acc_txt as "PhenotypeID", diseaseTerm.nm as "DiseaseName", diseaseTerm.acc_db_cd || ':' || diseaseTerm.acc_txt "DiseaseID", ( SELECT STRING_AGG(distinct geneTerm.nm, '|') from term geneTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = geneTerm.id and ptr.via_term_object_type_id = 4) AS "GeneInferenceNetwork", ( SELECT STRING_AGG(distinct chemTerm.nm, '|') from term chemTerm, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and ptr.via_term_id = chemTerm.id and ptr.via_term_object_type_id = 2) AS "ChemInferenceNetwork", ( SELECT STRING_AGG(distinct r.acc_txt, '|') from reference r, phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and (r.id = ptr.reference_id or r.id = ptr.term_reference_id)) AS "PubMedIDs" FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE (phenotypeTerm.id = 1270787) and diseaseTerm.object_type_id = 3;
Date: 2025-10-28 02:26:37 Duration: 22s325ms Bind query: yes
7 5s761ms 12s375ms 7s967ms 3 23s901ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Oct 28 05 2 11s526ms 5s763ms 16 1 12s375ms 12s375ms [ User: pubeu - Total duration: 12s375ms - Times executed: 1 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2113874') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 16:14:40 Duration: 12s375ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 05:18:06 Duration: 5s764ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-10-28 05:18:14 Duration: 5s761ms Bind query: yes
8 7s198ms 7s412ms 7s305ms 2 14s610ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Oct 28 05 2 14s610ms 7s305ms [ User: qaeu - Total duration: 7s198ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:49:16 Duration: 7s412ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:44:20 Duration: 7s198ms Database: ctdprd51 User: qaeu Bind query: yes
9 7s147ms 7s222ms 7s184ms 2 14s369ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Oct 28 05 2 14s369ms 7s184ms [ User: pubeu - Total duration: 7s222ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:49:24 Duration: 7s222ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-10-28 05:44:28 Duration: 7s147ms Bind query: yes
10 7s142ms 7s142ms 7s142ms 1 7s142ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Oct 28 03 1 7s142ms 7s142ms [ User: pubeu - Total duration: 7s142ms - Times executed: 1 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1363239' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-10-28 03:31:02 Duration: 7s142ms Database: ctdprd51 User: pubeu Bind query: yes
11 6s790ms 6s790ms 6s790ms 1 6s790ms vacuum analyze log_query_archive;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Oct 28 00 1 6s790ms 6s790ms -
VACUUM ANALYZE log_query_archive;
Date: 2025-10-28 00:11:06 Duration: 6s790ms
12 6s391ms 6s424ms 6s407ms 2 12s815ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Oct 28 23 2 12s815ms 6s407ms [ User: pubeu - Total duration: 12s815ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1422417') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-10-28 23:22:50 Duration: 6s424ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1422417') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-10-28 23:22:48 Duration: 6s391ms Database: ctdprd51 User: pubeu Bind query: yes
13 6s316ms 6s316ms 6s316ms 1 6s316ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from term_label l inner join dag_path dp on l.term_id = dp.ancestor_object_id where upper(l.nm) like ? and l.object_type_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Oct 28 12 1 6s316ms 6s316ms [ User: pubeu - Total duration: 6s316ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE 'HOMO SAPIENS' AND l.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 500;
Date: 2025-10-28 12:22:08 Duration: 6s316ms Database: ctdprd51 User: pubeu Bind query: yes
14 5s785ms 5s785ms 5s785ms 1 5s785ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) and exists ( select ? from gene_chem_reference_axn gcra where gcr.id = gcra.gene_chem_reference_id and gcra.action_type_nm in ( select ac.nm from action_type ap, action_type ac where ac.subset_left_no between ap.subset_left_no and ap.subset_right_no and (ap.nm = ?))) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Oct 28 03 1 5s785ms 5s785ms [ User: pubeu - Total duration: 5s785ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) AND exists ( SELECT 1 FROM gene_chem_reference_axn gcra WHERE gcr.id = gcra.gene_chem_reference_id AND gcra.action_type_nm IN ( SELECT ac.nm FROM action_type ap, action_type ac WHERE ac.subset_left_no BETWEEN ap.subset_left_no AND ap.subset_right_no AND (ap.nm = 'expression'))) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-10-28 03:12:20 Duration: 5s785ms Database: ctdprd51 User: pubeu Bind query: yes
15 5s366ms 5s590ms 5s492ms 3 16s476ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Oct 28 05 3 16s476ms 5s492ms [ User: pubeu - Total duration: 16s476ms - Times executed: 3 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 50;
Date: 2025-10-28 05:21:44 Duration: 5s590ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 300;
Date: 2025-10-28 05:22:35 Duration: 5s520ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2108479') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 150;
Date: 2025-10-28 05:21:41 Duration: 5s366ms Database: ctdprd51 User: pubeu Bind query: yes
16 5s57ms 5s76ms 5s67ms 2 10s134ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Oct 28 05 2 10s134ms 5s67ms [ User: qaeu - Total duration: 5s76ms - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1324741)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2025-10-28 05:43:55 Duration: 5s76ms Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1324741)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2025-10-28 05:48:50 Duration: 5s57ms Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 0ms 5 0ms 0ms 0ms ;Times Reported Time consuming bind #1
Day Hour Count Duration Avg duration Oct 28 04 5 0ms 0ms [ User: pubeu - Total duration: 14m29s - Times executed: 4 ]
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;
Date: Duration: 0ms Database: postgres User: ctdprd51 Remote: pubeu
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Events
Log levels
Key values
- 9,965 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 0 FATAL entries
- 1 ERROR entries
- 2 WARNING entries
- 4 EVENTLOG entries
Most Frequent Errors/Events
Key values
- 4 Max number of times the same event was reported
- 7 Total events found
Rank Times reported Error 1 4 LOG: could not receive data from client: Connection reset by peer
Times Reported Most Frequent Error / Event #1
Day Hour Count Oct 28 18 4 2 2 WARNING: is not a PostgreSQL server process
Times Reported Most Frequent Error / Event #2
Day Hour Count Oct 28 18 2 3 1 ERROR: permission denied for schema ...
Times Reported Most Frequent Error / Event #3
Day Hour Count Oct 28 10 1 - ERROR: permission denied for schema pubc at character 15
Statement: select * from pubc.log_query limit 100
Date: 2025-10-28 10:52:16 Database: ctdprd51 Application: pgAdmin 4 - CONN:7438922 User: pub1 Remote: