Times Reported Time consuming queries #1

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[ User: pubeu - Total duration: 13m26s - Times executed: 1 ]

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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN db_link dbli ON dbli.object_id = pi.ancestor_object_id WHERE dbli.acc_txt = 'GO:0008150' AND dbli.type_cd = 'A' AND dbli.object_type_id = 5) INTERSECT ( SELECT /* IQH.getMasterPathwayWhereEquals.Acc */ tp.term_id FROM term_pathway tp WHERE tp.object_type_id = 4 AND UPPER(tp.pathway_acc_txt) = 'HSA05034' AND tp.pathway_acc_db_cd = 'KEGG'))) AND gcr.chem_id = ANY (ARRAY ( SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE 'BLUE LIGHT' AND l.object_type_id = 2)) AND gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;

Date: 2025-11-09 15:16:04
Duration: 13m26s
Database: ctdprd51
User: pubeu
Bind query: yes

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Times Reported Time consuming queries #2

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[ User: pubc - Total duration: 9m17s - Times executed: 1 ]

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[ Application: psql - Total duration: 9m17s - Times executed: 1 ]

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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();

Date: 2025-11-09 00:09:19
Duration: 9m17s
Database: ctdprd51
User: pubc
Application: psql

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Times Reported Time consuming queries #3

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[ User: pubeu - Total duration: 3m27s - Times executed: 19 ]

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SELECT /* BatchChemDiseaseAssnsDAO */ 'neoplasms' "Input", c.nm "ChemicalName", c.acc_txt "ChemicalID", c.secondary_nm "CasRN", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", STRING_AGG(cdr.source_acc_txt, '|' ORDER BY cdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs", CASE WHEN cdr.via_gene_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cdr.chem_id AND a.disease_id = cdr.disease_id) ELSE NULL END "DirectEvidence", g.nm "InferenceGeneSymbol", cdr.network_score "InferenceScore" FROM chem_disease_reference cdr INNER JOIN term c ON cdr.chem_id = c.id INNER JOIN term d ON cdr.disease_id = d.id LEFT OUTER JOIN reference r ON cdr.reference_id = r.id LEFT OUTER JOIN term g ON cdr.via_gene_id = g.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2115732) GROUP BY c.nm, c.nm_sort, c.acc_txt, c.secondary_nm, d.id, d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, g.nm, CASE WHEN cdr.via_gene_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cdr.chem_id AND a.disease_id = cdr.disease_id) ELSE NULL END, g.nm, cdr.network_score ORDER BY d.nm_sort, c.nm_sort, "DirectEvidence", g.nm;

Date: 2025-11-09 07:37:38
Duration: 31s916ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* BatchChemDiseaseAssnsDAO */ 'pathologic processes' "Input", c.nm "ChemicalName", c.acc_txt "ChemicalID", c.secondary_nm "CasRN", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", STRING_AGG(cdr.source_acc_txt, '|' ORDER BY cdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs", CASE WHEN cdr.via_gene_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cdr.chem_id AND a.disease_id = cdr.disease_id) ELSE NULL END "DirectEvidence", g.nm "InferenceGeneSymbol", cdr.network_score "InferenceScore" FROM chem_disease_reference cdr INNER JOIN term c ON cdr.chem_id = c.id INNER JOIN term d ON cdr.disease_id = d.id LEFT OUTER JOIN reference r ON cdr.reference_id = r.id LEFT OUTER JOIN term g ON cdr.via_gene_id = g.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2120803) GROUP BY c.nm, c.nm_sort, c.acc_txt, c.secondary_nm, d.id, d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, g.nm, CASE WHEN cdr.via_gene_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cdr.chem_id AND a.disease_id = cdr.disease_id) ELSE NULL END, g.nm, cdr.network_score ORDER BY d.nm_sort, c.nm_sort, "DirectEvidence", g.nm;

Date: 2025-11-09 07:29:36
Duration: 27s779ms
Bind query: yes

SELECT /* BatchChemDiseaseAssnsDAO */ 'digestive system diseases' "Input", c.nm "ChemicalName", c.acc_txt "ChemicalID", c.secondary_nm "CasRN", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", STRING_AGG(cdr.source_acc_txt, '|' ORDER BY cdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs", CASE WHEN cdr.via_gene_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cdr.chem_id AND a.disease_id = cdr.disease_id) ELSE NULL END "DirectEvidence", g.nm "InferenceGeneSymbol", cdr.network_score "InferenceScore" FROM chem_disease_reference cdr INNER JOIN term c ON cdr.chem_id = c.id INNER JOIN term d ON cdr.disease_id = d.id LEFT OUTER JOIN reference r ON cdr.reference_id = r.id LEFT OUTER JOIN term g ON cdr.via_gene_id = g.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2118512) GROUP BY c.nm, c.nm_sort, c.acc_txt, c.secondary_nm, d.id, d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, g.nm, CASE WHEN cdr.via_gene_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cdr.chem_id AND a.disease_id = cdr.disease_id) ELSE NULL END, g.nm, cdr.network_score ORDER BY d.nm_sort, c.nm_sort, "DirectEvidence", g.nm;

Date: 2025-11-09 07:28:21
Duration: 24s408ms
Database: ctdprd51
User: pubeu
Bind query: yes

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Times Reported Time consuming queries #4

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[ User: pubeu - Total duration: 33s57ms - Times executed: 2 ]

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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort;

Date: 2025-11-09 22:31:02
Duration: 16s706ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort;

Date: 2025-11-09 22:30:54
Duration: 16s351ms
Database: ctdprd51
User: pubeu
Bind query: yes

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Times Reported Time consuming queries #5

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[ User: pubeu - Total duration: 19s865ms - Times executed: 2 ]

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SELECT /* BatchChemDiseaseAssnsDAO */ 'neoplasms "Input", c.nm "ChemicalName", c.acc_txt "ChemicalID", c.secondary_nm "CasRN", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", STRING_AGG(cdr.source_acc_txt, '|' ORDER BY cdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs", CASE WHEN cdr.via_gene_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cdr.chem_id AND a.disease_id = cdr.disease_id) ELSE NULL END "DirectEvidence", g.nm "InferenceGeneSymbol", cdr.network_score "InferenceScore" FROM chem_disease_reference cdr INNER JOIN term c ON cdr.chem_id = c.id INNER JOIN term d ON cdr.disease_id = d.id LEFT OUTER JOIN reference r ON cdr.reference_id = r.id LEFT OUTER JOIN term g ON cdr.via_gene_id = g.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2115715) GROUP BY c.nm, c.nm_sort, c.acc_txt, c.secondary_nm, d.id, d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, g.nm, CASE WHEN cdr.via_gene_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cdr.chem_id AND a.disease_id = cdr.disease_id) ELSE NULL END, g.nm, cdr.network_score ORDER BY d.nm_sort, c.nm_sort, "DirectEvidence", g.nm;

Date: 2025-11-09 07:38:02
Duration: 11s584ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* BatchChemDiseaseAssnsDAO */ 'genetic diseases "Input", c.nm "ChemicalName", c.acc_txt "ChemicalID", c.secondary_nm "CasRN", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", STRING_AGG(cdr.source_acc_txt, '|' ORDER BY cdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs", CASE WHEN cdr.via_gene_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cdr.chem_id AND a.disease_id = cdr.disease_id) ELSE NULL END "DirectEvidence", g.nm "InferenceGeneSymbol", cdr.network_score "InferenceScore" FROM chem_disease_reference cdr INNER JOIN term c ON cdr.chem_id = c.id INNER JOIN term d ON cdr.disease_id = d.id LEFT OUTER JOIN reference r ON cdr.reference_id = r.id LEFT OUTER JOIN term g ON cdr.via_gene_id = g.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2118445) GROUP BY c.nm, c.nm_sort, c.acc_txt, c.secondary_nm, d.id, d.nm, d.nm_sort, d.acc_txt, d.acc_db_cd, g.nm, CASE WHEN cdr.via_gene_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cdr.chem_id AND a.disease_id = cdr.disease_id) ELSE NULL END, g.nm, cdr.network_score ORDER BY d.nm_sort, c.nm_sort, "DirectEvidence", g.nm;

Date: 2025-11-09 07:41:34
Duration: 8s280ms
Database: ctdprd51
User: pubeu
Bind query: yes