pgBadger-
Global information
- Generated on Sun Jan 5 04:15:14 2025
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20250104
- Parsed 142,248 log entries in 13s
- Log start from 2025-01-01 00:00:01 to 2025-01-04 23:57:54
-
Overview
Global Stats
- 284 Number of unique normalized queries
- 3,264 Number of queries
- 12h3m6s Total query duration
- 2025-01-01 00:02:23 First query
- 2025-01-04 23:57:54 Last query
- 3 queries/s at 2025-01-01 21:38:18 Query peak
- 12h3m6s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 12h3m6s Execute total duration
- 42 Number of events
- 8 Number of unique normalized events
- 17 Max number of times the same event was reported
- 0 Number of cancellation
- 55 Total number of automatic vacuums
- 141 Total number of automatic analyzes
- 1,129 Number temporary file
- 1.00 GiB Max size of temporary file
- 46.47 MiB Average size of temporary file
- 8,303 Total number of sessions
- 111 sessions at 2025-01-02 18:41:40 Session peak
- 167d4h46m39s Total duration of sessions
- 28m59s Average duration of sessions
- 0 Average queries per session
- 5s225ms Average queries duration per session
- 28m54s Average idle time per session
- 8,303 Total number of connections
- 24 connections/s at 2025-01-03 11:14:10 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 3 queries/s Query Peak
- 2025-01-01 21:38:18 Date
SELECT Traffic
Key values
- 3 queries/s Query Peak
- 2025-01-01 21:38:18 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2025-01-01 14:01:10 Date
Queries duration
Key values
- 12h3m6s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jan 01 00 23 0ms 22m20s 59s959ms 3s550ms 3s907ms 22m26s 01 23 0ms 12s933ms 1s886ms 2s558ms 3s950ms 12s933ms 02 21 0ms 11s188ms 1s977ms 1s436ms 4s664ms 11s188ms 03 47 0ms 27s120ms 3s279ms 14s781ms 20s112ms 28s270ms 04 22 0ms 19s277ms 2s576ms 2s978ms 3s942ms 23s118ms 05 98 0ms 2h14m32s 1m47s 48s28ms 1m9s 2h14m32s 06 38 0ms 44s703ms 4s345ms 4s567ms 14s138ms 55s46ms 07 16 0ms 13s124ms 2s382ms 1s824ms 3s766ms 14s361ms 08 17 0ms 3s958ms 1s548ms 1s303ms 2s100ms 4s881ms 09 17 0ms 7s754ms 2s938ms 4s57ms 6s435ms 9s905ms 10 23 0ms 44s718ms 5s426ms 2s344ms 9s773ms 54s165ms 11 24 0ms 5s916ms 2s233ms 3s985ms 5s916ms 6s984ms 12 18 0ms 4s614ms 2s104ms 4s38ms 4s549ms 5s778ms 13 15 0ms 4s104ms 1s728ms 2s796ms 3s911ms 4s104ms 14 25 0ms 4m51s 17s565ms 11s178ms 56s560ms 4m51s 15 21 0ms 11s233ms 2s976ms 3s775ms 11s106ms 13s513ms 16 29 0ms 11s282ms 4s451ms 11s215ms 13s275ms 22s404ms 17 14 0ms 19s587ms 2s689ms 2s109ms 3s302ms 20s766ms 18 23 0ms 44s646ms 5s821ms 2s686ms 41s127ms 54s100ms 19 19 0ms 4s524ms 1s293ms 1s189ms 2s54ms 4s524ms 20 53 0ms 30s2ms 3s286ms 11s304ms 18s341ms 30s2ms 21 57 0ms 30s179ms 8s277ms 32s729ms 39s782ms 1m11s 22 23 0ms 5s260ms 2s385ms 2s174ms 3s733ms 35s348ms 23 42 0ms 14s170ms 6s362ms 22s336ms 24s856ms 40s242ms Jan 02 00 26 0ms 22m7s 53s269ms 2s363ms 5s843ms 22m13s 01 50 0ms 5s81ms 3s117ms 7s743ms 8s926ms 16s326ms 02 37 0ms 4s556ms 2s373ms 4s975ms 5s222ms 7s648ms 03 48 0ms 4s918ms 2s140ms 6s49ms 7s294ms 8s664ms 04 44 0ms 5s590ms 3s143ms 5s58ms 7s675ms 9s474ms 05 72 0ms 6s863ms 2s285ms 14s919ms 16s428ms 35s310ms 06 140 0ms 44s502ms 4s301ms 46s167ms 49s417ms 56s208ms 07 13 0ms 5s108ms 2s10ms 1s208ms 5s696ms 6s301ms 08 25 0ms 3s884ms 1s719ms 2s394ms 4s917ms 5s987ms 09 26 0ms 7s925ms 2s 3s501ms 6s89ms 7s925ms 10 32 0ms 44s554ms 4s440ms 4s57ms 11s85ms 54s47ms 11 16 0ms 10s60ms 2s500ms 4s488ms 4s687ms 11s218ms 12 44 0ms 31s161ms 7s611ms 22s445ms 38s820ms 39s731ms 13 43 0ms 4m4s 19s48ms 1m10s 1m29s 4m4s 14 63 0ms 1m52s 11s926ms 1m15s 1m26s 2m20s 15 31 0ms 1m36s 5s771ms 3s750ms 6s258ms 1m37s 16 21 0ms 4s509ms 1s518ms 2s211ms 3s293ms 5s45ms 17 41 0ms 6s65ms 2s321ms 4s927ms 16s99ms 24s430ms 18 30 0ms 44s737ms 4s873ms 3s587ms 9s723ms 55s439ms 19 31 0ms 5s1ms 1s686ms 3s918ms 5s37ms 6s236ms 20 44 0ms 19s449ms 2s954ms 4s900ms 8s819ms 20s572ms 21 78 0ms 13s595ms 2s928ms 7s594ms 11s178ms 17s416ms 22 23 0ms 4s564ms 1s637ms 2s501ms 4s459ms 4s936ms 23 18 0ms 2s429ms 1s386ms 2s239ms 2s387ms 3s396ms Jan 03 00 40 0ms 22m10s 34s697ms 3s484ms 4s404ms 22m19s 01 30 0ms 4s508ms 2s138ms 4s479ms 5s170ms 7s707ms 02 22 0ms 4s141ms 1s751ms 3s219ms 3s814ms 4s141ms 03 17 0ms 2s454ms 1s275ms 1s335ms 2s380ms 3s602ms 04 28 0ms 4s934ms 1s728ms 3s814ms 3s855ms 5s998ms 05 80 0ms 6s831ms 2s236ms 9s392ms 17s555ms 30s948ms 06 52 0ms 44s628ms 3s648ms 5s505ms 9s753ms 55s207ms 07 39 0ms 7s120ms 1s758ms 3s87ms 4s925ms 10s91ms 08 39 0ms 6s432ms 1s730ms 3s482ms 7s84ms 8s267ms 09 47 0ms 7s728ms 2s162ms 3s204ms 6s170ms 31s761ms 10 36 0ms 44s778ms 4s664ms 5s188ms 9s758ms 55s115ms 11 36 0ms 3s372ms 1s952ms 4s273ms 7s582ms 17s350ms 12 43 0ms 8s541ms 3s41ms 7s880ms 12s210ms 14s869ms 13 38 0ms 5s104ms 1s607ms 2s897ms 5s104ms 8s139ms 14 61 0ms 44s661ms 4s68ms 15s761ms 26s263ms 55s298ms 15 20 0ms 14s461ms 3s210ms 4s639ms 6s256ms 16s453ms 16 19 0ms 4s662ms 1s959ms 3s797ms 4s537ms 4s662ms 17 18 0ms 3s228ms 1s611ms 2s377ms 2s911ms 3s228ms 18 40 0ms 44s694ms 4s478ms 6s200ms 9s700ms 55s541ms 19 28 0ms 4s672ms 1s414ms 2s357ms 2s365ms 5s874ms 20 27 0ms 3s315ms 1s466ms 2s802ms 3s242ms 3s579ms 21 31 0ms 5s954ms 1s832ms 3s932ms 5s895ms 6s346ms 22 27 0ms 6s217ms 2s20ms 3s297ms 4s795ms 8s57ms 23 37 0ms 20s241ms 2s38ms 3s758ms 4s696ms 20s241ms Jan 04 00 27 0ms 22m20s 1m31s 3s851ms 5s569ms 22m51s 01 27 0ms 5s985ms 2s27ms 3s541ms 4s346ms 7s263ms 02 23 0ms 21s310ms 2s868ms 2s523ms 4s683ms 25s287ms 03 33 0ms 4s658ms 1s685ms 3s29ms 4s618ms 10s309ms 04 47 0ms 10s59ms 2s481ms 8s146ms 10s59ms 14s729ms 05 83 0ms 42s491ms 2s837ms 15s45ms 30s878ms 44s722ms 06 19 0ms 19s120ms 2s836ms 3s212ms 3s979ms 22s903ms 07 35 0ms 5s941ms 2s4ms 4s423ms 4s907ms 7s969ms 08 38 0ms 5s838ms 1s522ms 2s500ms 4s628ms 9s635ms 09 20 0ms 4s947ms 1s901ms 2s254ms 4s405ms 8s81ms 10 33 0ms 6s184ms 1s932ms 4s816ms 6s174ms 6s314ms 11 30 0ms 43s73ms 3s583ms 3s950ms 7s939ms 44s253ms 12 21 0ms 33m43s 1m43s 6s335ms 13s799ms 33m43s 13 42 0ms 6s331ms 2s417ms 5s441ms 18s104ms 26s958ms 14 42 0ms 3h3m 4m22s 4s675ms 5s487ms 3h3m 15 14 0ms 1s401ms 1s202ms 1s255ms 2s353ms 2s599ms 16 13 0ms 6s943ms 2s578ms 2s677ms 5s56ms 13s666ms 17 7 0ms 7s76ms 2s373ms 1s260ms 1s372ms 7s76ms 18 32 0ms 1m11s 12s790ms 54s880ms 1m2s 1m11s 19 48 0ms 23m55s 50s226ms 1m22s 2m34s 23m57s 20 9 0ms 5s72ms 1s744ms 1s315ms 1s398ms 5s72ms 21 27 0ms 2s298ms 1s149ms 2s173ms 2s298ms 4s526ms 22 11 0ms 8s641ms 2s409ms 1s495ms 2s590ms 8s641ms 23 24 0ms 4s132ms 1s403ms 2s700ms 3s413ms 5s252ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jan 01 00 22 0 1m2s 1s206ms 3s550ms 22m20s 01 23 0 1s886ms 1s361ms 2s558ms 12s933ms 02 21 0 1s977ms 1s170ms 1s436ms 11s188ms 03 46 0 3s278ms 3s982ms 14s781ms 28s270ms 04 22 0 2s576ms 1s316ms 2s978ms 23s118ms 05 89 0 1m57s 17s790ms 33s875ms 2h14m32s 06 28 10 4s345ms 2s653ms 4s567ms 55s46ms 07 16 0 2s382ms 1s126ms 1s824ms 14s361ms 08 17 0 1s548ms 1s102ms 1s303ms 4s881ms 09 16 0 2s917ms 1s186ms 4s57ms 9s905ms 10 15 8 5s426ms 1s308ms 3s867ms 54s165ms 11 24 0 2s233ms 1s115ms 3s985ms 6s984ms 12 18 0 2s104ms 1s142ms 4s38ms 5s778ms 13 15 0 1s728ms 1s185ms 2s796ms 4s104ms 14 15 10 17s565ms 1s358ms 11s178ms 4m51s 15 20 0 2s957ms 1s119ms 3s775ms 13s513ms 16 29 0 4s451ms 3s921ms 11s215ms 22s404ms 17 13 0 2s642ms 1s102ms 1s189ms 20s766ms 18 13 10 5s821ms 1s104ms 2s686ms 54s100ms 19 19 0 1s293ms 1s156ms 1s189ms 4s524ms 20 53 0 3s286ms 2s821ms 11s304ms 27s833ms 21 55 0 8s456ms 18s878ms 32s729ms 1m11s 22 23 0 2s385ms 1s200ms 2s174ms 35s348ms 23 42 0 6s362ms 12s259ms 22s336ms 40s242ms Jan 02 00 25 0 55s162ms 1s210ms 2s363ms 22m7s 01 50 0 3s117ms 3s964ms 7s743ms 16s326ms 02 37 0 2s373ms 3s804ms 4s975ms 7s648ms 03 48 0 2s140ms 4s926ms 6s49ms 8s664ms 04 44 0 3s143ms 4s806ms 5s58ms 9s474ms 05 69 0 2s272ms 2s459ms 14s919ms 35s310ms 06 130 10 4s301ms 32s488ms 46s167ms 53s967ms 07 13 0 2s10ms 1s15ms 1s208ms 6s301ms 08 25 0 1s719ms 1s161ms 2s394ms 4s993ms 09 26 0 2s 1s216ms 3s501ms 7s136ms 10 21 8 4s658ms 1s317ms 4s57ms 41s405ms 11 15 0 1s996ms 1s137ms 2s637ms 6s436ms 12 44 0 7s611ms 11s252ms 22s445ms 38s954ms 13 43 0 19s48ms 13s167ms 1m10s 1m33s 14 52 10 12s64ms 8s248ms 1m15s 1m26s 15 27 0 1s567ms 1s255ms 2s466ms 6s258ms 16 21 0 1s518ms 1s255ms 2s211ms 5s45ms 17 41 0 2s321ms 1s839ms 4s927ms 24s430ms 18 20 10 4s873ms 1s243ms 3s587ms 55s41ms 19 31 0 1s686ms 1s303ms 3s918ms 6s236ms 20 44 0 2s954ms 3s839ms 4s900ms 12s619ms 21 78 0 2s928ms 6s245ms 7s594ms 11s482ms 22 23 0 1s637ms 1s361ms 2s501ms 4s936ms 23 18 0 1s386ms 1s244ms 2s239ms 3s396ms Jan 03 00 39 0 35s438ms 2s199ms 3s484ms 22m14s 01 30 0 2s138ms 2s722ms 4s479ms 7s707ms 02 22 0 1s751ms 1s240ms 3s219ms 4s141ms 03 17 0 1s275ms 1s137ms 1s335ms 3s602ms 04 28 0 1s728ms 2s328ms 3s814ms 5s998ms 05 75 0 2s215ms 4s513ms 9s392ms 30s948ms 06 42 10 3s648ms 3s147ms 5s505ms 54s269ms 07 38 0 1s749ms 2s157ms 3s87ms 7s120ms 08 38 0 1s690ms 2s239ms 3s482ms 8s267ms 09 45 0 2s141ms 2s475ms 3s204ms 11s964ms 10 24 10 4s777ms 2s598ms 5s188ms 55s115ms 11 35 0 1s954ms 2s309ms 4s273ms 17s350ms 12 42 0 3s35ms 3s543ms 7s880ms 14s17ms 13 38 0 1s607ms 2s240ms 2s897ms 6s96ms 14 51 10 4s68ms 4s744ms 15s761ms 55s298ms 15 20 0 3s210ms 1s825ms 4s639ms 16s453ms 16 19 0 1s959ms 1s930ms 3s797ms 4s662ms 17 17 0 1s588ms 1s226ms 2s377ms 3s228ms 18 30 10 4s478ms 2s793ms 6s200ms 55s45ms 19 28 0 1s414ms 1s345ms 2s357ms 5s874ms 20 26 0 1s395ms 1s919ms 2s585ms 3s579ms 21 29 0 1s787ms 2s231ms 3s278ms 5s954ms 22 27 0 2s20ms 2s278ms 3s297ms 8s57ms 23 37 0 2s38ms 3s464ms 3s758ms 20s241ms Jan 04 00 26 0 1m34s 2s1ms 3s851ms 22m45s 01 26 0 1s996ms 2s185ms 3s541ms 7s210ms 02 22 0 2s883ms 1s250ms 2s516ms 25s287ms 03 33 0 1s685ms 1s847ms 3s29ms 10s309ms 04 47 0 2s481ms 4s623ms 8s146ms 14s729ms 05 79 0 2s870ms 5s55ms 15s45ms 44s722ms 06 19 0 2s836ms 1s282ms 3s212ms 22s903ms 07 35 0 2s4ms 2s796ms 4s423ms 5s897ms 08 38 0 1s522ms 1s843ms 2s500ms 9s635ms 09 20 0 1s901ms 1s539ms 2s254ms 8s81ms 10 32 0 1s932ms 2s374ms 4s816ms 6s314ms 11 30 0 3s583ms 3s102ms 3s950ms 44s253ms 12 20 0 1m48s 2s892ms 6s335ms 33m43s 13 42 0 2s417ms 1s651ms 5s441ms 26s958ms 14 42 0 4m22s 2s452ms 4s675ms 3h3m 15 14 0 1s202ms 1s125ms 1s255ms 2s599ms 16 13 0 2s578ms 1s175ms 2s677ms 13s666ms 17 7 0 2s373ms 0ms 1s260ms 7s76ms 18 6 26 12s790ms 1s299ms 54s880ms 1m11s 19 28 20 50s226ms 25s377ms 1m20s 23m57s 20 9 0 1s744ms 1s74ms 1s315ms 5s72ms 21 27 0 1s149ms 1s175ms 2s173ms 4s526ms 22 11 0 2s409ms 1s227ms 1s495ms 8s641ms 23 24 0 1s403ms 1s399ms 2s700ms 5s252ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jan 01 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Jan 02 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 1 0 0 0 10s60ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Jan 03 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Jan 04 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Jan 01 00 0 21 21.00 0.00% 01 0 23 23.00 0.00% 02 0 21 21.00 0.00% 03 0 47 47.00 0.00% 04 0 22 22.00 0.00% 05 0 86 86.00 0.00% 06 0 28 28.00 0.00% 07 0 16 16.00 0.00% 08 0 18 18.00 0.00% 09 0 22 22.00 0.00% 10 0 16 16.00 0.00% 11 0 24 24.00 0.00% 12 0 18 18.00 0.00% 13 0 15 15.00 0.00% 14 0 15 15.00 0.00% 15 0 21 21.00 0.00% 16 0 29 29.00 0.00% 17 0 14 14.00 0.00% 18 0 13 13.00 0.00% 19 0 19 19.00 0.00% 20 0 53 53.00 0.00% 21 0 57 57.00 0.00% 22 0 23 23.00 0.00% 23 0 42 42.00 0.00% Jan 02 00 0 24 24.00 0.00% 01 0 50 50.00 0.00% 02 0 37 37.00 0.00% 03 0 48 48.00 0.00% 04 0 44 44.00 0.00% 05 0 72 72.00 0.00% 06 0 131 131.00 0.00% 07 0 21 21.00 0.00% 08 0 28 28.00 0.00% 09 0 28 28.00 0.00% 10 0 21 21.00 0.00% 11 0 20 20.00 0.00% 12 0 47 47.00 0.00% 13 0 40 40.00 0.00% 14 0 54 54.00 0.00% 15 0 26 26.00 0.00% 16 0 21 21.00 0.00% 17 0 41 41.00 0.00% 18 0 20 20.00 0.00% 19 0 31 31.00 0.00% 20 0 44 44.00 0.00% 21 0 78 78.00 0.00% 22 0 23 23.00 0.00% 23 0 18 18.00 0.00% Jan 03 00 0 38 38.00 0.00% 01 0 30 30.00 0.00% 02 0 22 22.00 0.00% 03 0 17 17.00 0.00% 04 0 28 28.00 0.00% 05 0 80 80.00 0.00% 06 0 42 42.00 0.00% 07 0 46 46.00 0.00% 08 0 41 41.00 0.00% 09 0 47 47.00 0.00% 10 0 28 28.00 0.00% 11 0 36 36.00 0.00% 12 0 47 47.00 0.00% 13 0 38 38.00 0.00% 14 0 51 51.00 0.00% 15 0 20 20.00 0.00% 16 0 19 19.00 0.00% 17 0 18 18.00 0.00% 18 0 30 30.00 0.00% 19 0 28 28.00 0.00% 20 0 27 27.00 0.00% 21 0 31 31.00 0.00% 22 0 27 27.00 0.00% 23 0 37 37.00 0.00% Jan 04 00 0 25 25.00 0.00% 01 0 27 27.00 0.00% 02 0 23 23.00 0.00% 03 0 33 33.00 0.00% 04 0 47 47.00 0.00% 05 0 83 83.00 0.00% 06 0 19 19.00 0.00% 07 0 35 35.00 0.00% 08 0 38 38.00 0.00% 09 0 20 20.00 0.00% 10 0 33 33.00 0.00% 11 0 30 30.00 0.00% 12 0 21 21.00 0.00% 13 0 42 42.00 0.00% 14 0 42 42.00 0.00% 15 0 14 14.00 0.00% 16 0 13 13.00 0.00% 17 0 7 7.00 0.00% 18 0 6 6.00 0.00% 19 0 28 28.00 0.00% 20 0 9 9.00 0.00% 21 0 27 27.00 0.00% 22 0 11 11.00 0.00% 23 0 24 24.00 0.00% Day Hour Count Average / Second Jan 01 00 86 0.02/s 01 79 0.02/s 02 80 0.02/s 03 81 0.02/s 04 94 0.03/s 05 105 0.03/s 06 86 0.02/s 07 82 0.02/s 08 78 0.02/s 09 85 0.02/s 10 84 0.02/s 11 84 0.02/s 12 85 0.02/s 13 78 0.02/s 14 84 0.02/s 15 77 0.02/s 16 77 0.02/s 17 73 0.02/s 18 74 0.02/s 19 79 0.02/s 20 141 0.04/s 21 144 0.04/s 22 84 0.02/s 23 87 0.02/s Jan 02 00 82 0.02/s 01 94 0.03/s 02 78 0.02/s 03 84 0.02/s 04 96 0.03/s 05 94 0.03/s 06 96 0.03/s 07 78 0.02/s 08 88 0.02/s 09 99 0.03/s 10 99 0.03/s 11 80 0.02/s 12 138 0.04/s 13 105 0.03/s 14 104 0.03/s 15 77 0.02/s 16 77 0.02/s 17 88 0.02/s 18 85 0.02/s 19 75 0.02/s 20 79 0.02/s 21 91 0.03/s 22 81 0.02/s 23 82 0.02/s Jan 03 00 81 0.02/s 01 86 0.02/s 02 81 0.02/s 03 90 0.03/s 04 82 0.02/s 05 95 0.03/s 06 99 0.03/s 07 89 0.02/s 08 86 0.02/s 09 82 0.02/s 10 102 0.03/s 11 155 0.04/s 12 89 0.02/s 13 86 0.02/s 14 84 0.02/s 15 86 0.02/s 16 83 0.02/s 17 76 0.02/s 18 81 0.02/s 19 75 0.02/s 20 78 0.02/s 21 73 0.02/s 22 78 0.02/s 23 76 0.02/s Jan 04 00 83 0.02/s 01 85 0.02/s 02 81 0.02/s 03 86 0.02/s 04 81 0.02/s 05 102 0.03/s 06 80 0.02/s 07 91 0.03/s 08 83 0.02/s 09 79 0.02/s 10 83 0.02/s 11 80 0.02/s 12 79 0.02/s 13 86 0.02/s 14 79 0.02/s 15 78 0.02/s 16 75 0.02/s 17 74 0.02/s 18 80 0.02/s 19 77 0.02/s 20 77 0.02/s 21 78 0.02/s 22 81 0.02/s 23 75 0.02/s Day Hour Count Average Duration Average idle time Jan 01 00 86 29m17s 29m1s 01 79 30m25s 30m25s 02 79 30m57s 30m56s 03 81 29m9s 29m7s 04 94 27m10s 27m9s 05 106 23m48s 22m9s 06 86 28m38s 28m36s 07 82 29m48s 29m48s 08 78 29m57s 29m57s 09 85 28m10s 28m10s 10 84 28m49s 28m47s 11 84 29m47s 29m47s 12 85 29m2s 29m2s 13 78 31m29s 31m28s 14 84 28m43s 28m37s 15 77 31m10s 31m9s 16 77 29m56s 29m54s 17 73 31m43s 31m42s 18 74 30m29s 30m27s 19 79 30m43s 30m43s 20 141 17m11s 17m10s 21 144 15m3s 15m 22 84 28m22s 28m22s 23 87 28m10s 28m7s Jan 02 00 82 30m6s 29m49s 01 94 26m29s 26m27s 02 78 30m10s 30m9s 03 84 29m13s 29m12s 04 96 26m1s 26m 05 94 24m56s 24m54s 06 96 25m13s 25m7s 07 78 30m38s 30m38s 08 82 29m31s 29m31s 09 99 25m2s 25m2s 10 99 24m16s 24m14s 11 80 30m7s 30m7s 12 137 17m35s 17m32s 13 104 23m22s 23m14s 14 104 23m25s 23m18s 15 77 29m55s 29m52s 16 77 30m46s 30m45s 17 88 27m38s 27m37s 18 87 37m25s 37m24s 19 81 1h11m40s 1h11m39s 20 79 30m5s 30m3s 21 91 24m56s 24m53s 22 81 29m55s 29m54s 23 82 29m5s 29m4s Jan 03 00 81 29m36s 29m19s 01 86 28m32s 28m31s 02 81 30m42s 30m41s 03 90 26m34s 26m33s 04 82 29m1s 29m1s 05 95 25m39s 25m37s 06 99 24m44s 24m42s 07 89 26m32s 26m31s 08 86 28m47s 28m46s 09 82 29m6s 29m5s 10 95 26m4s 26m2s 11 154 15m52s 15m52s 12 89 27m17s 27m16s 13 86 27m37s 27m37s 14 84 27m34s 27m31s 15 86 27m22s 27m21s 16 82 29m4s 29m3s 17 78 39m58s 39m58s 18 86 51m46s 51m44s 19 76 37m24s 37m24s 20 78 30m24s 30m24s 21 73 31m17s 31m16s 22 78 31m6s 31m6s 23 76 31m52s 31m51s Jan 04 00 83 29m29s 28m59s 01 85 29m18s 29m17s 02 81 30m5s 30m4s 03 86 28m12s 28m11s 04 81 29m9s 29m7s 05 102 23m41s 23m39s 06 80 29m50s 29m49s 07 91 27m44s 27m44s 08 83 27m25s 27m24s 09 79 31m22s 31m22s 10 83 30m4s 30m3s 11 78 30m29s 30m27s 12 80 30m55s 30m27s 13 86 27m13s 27m12s 14 80 32m11s 29m53s 15 78 30m55s 30m55s 16 75 31m3s 31m2s 17 74 31m30s 31m30s 18 79 30m41s 30m36s 19 78 31m29s 30m58s 20 77 30m56s 30m56s 21 79 54m22s 54m21s 22 81 30m16s 30m16s 23 75 31m31s 31m31s -
Connections
Established Connections
Key values
- 24 connections Connection Peak
- 2025-01-03 11:14:10 Date
Connections per database
Key values
- ctdprd51 Main Database
- 8,303 connections Total
Connections per user
Key values
- pubeu Main User
- 8,303 connections Total
-
Sessions
Simultaneous sessions
Key values
- 111 sessions Session Peak
- 2025-01-02 18:41:40 Date
Histogram of session times
Key values
- 6,998 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 8,303 sessions Total
Sessions per user
Key values
- pubeu Main User
- 8,303 sessions Total
Sessions per host
Key values
- 10.12.5.37 Main Host
- 8,303 sessions Total
Host Count Total Duration Average Duration 10.12.5.36 15 26s176ms 1s745ms 10.12.5.37 2,126 32d9h55m 21m57s 10.12.5.38 1,499 31d23h31m46s 30m43s 10.12.5.39 1,488 32d12m36s 30m58s 10.12.5.40 97 59m7s 36s570ms 10.12.5.45 1,522 31d23h56m26s 30m16s 10.12.5.46 1,504 32d43m36s 30m40s 192.168.201.14 1 1d10h13m34s 1d10h13m34s 192.168.201.18 24 5d6h1m58s 5h15m4s ::1 27 1h12m6s 2m40s Sessions per application
Key values
- unknown Main Application
- 8,303 sessions Total
Application Count Total Duration Average Duration pgAdmin 4 - CONN:2580687 3 58s343ms 19s447ms pgAdmin 4 - CONN:3686940 2 3m7s 1m33s pgAdmin 4 - CONN:6428771 1 4m52s 4m52s pgAdmin 4 - DB:ctdprd51 2 1s399ms 699ms pg_bulkload 4 1s919ms 479ms pg_dump 1 95ms 95ms pg_dumpall 1 17ms 17ms psql 16 6s3ms 375ms unknown 8,273 167d4h37m32s 29m6s -
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 403,540 buffers Checkpoint Peak
- 2025-01-04 19:17:09 Date
- 1619.849 seconds Highest write time
- 0.256 seconds Sync time
Checkpoints Wal files
Key values
- 538 files Wal files usage Peak
- 2025-01-02 13:09:20 Date
Checkpoints distance
Key values
- 17,225.32 Mo Distance Peak
- 2025-01-02 14:51:37 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Jan 01 00 2,996 300.051s 0.004s 300.17s 01 191 19.312s 0.002s 19.341s 02 194 19.621s 0.002s 19.651s 03 5,709 572.029s 0.004s 572.134s 04 298 29.947s 0.002s 29.977s 05 308 31.026s 0.002s 31.057s 06 558 56.1s 0.003s 56.133s 07 418 42.056s 0.002s 42.133s 08 186 18.623s 0.002s 18.653s 09 402 40.46s 0.002s 40.49s 10 323 32.537s 0.002s 32.567s 11 116 11.796s 0.002s 11.825s 12 201 20.332s 0.002s 20.362s 13 2,125 212.825s 0.002s 212.913s 14 385 38.738s 0.003s 38.769s 15 274 27.533s 0.002s 27.562s 16 259 26.108s 0.002s 26.138s 17 161 16.302s 0.002s 16.333s 18 148 14.999s 0.002s 15.028s 19 217 21.902s 0.002s 21.932s 20 158 16.015s 0.002s 16.045s 21 193 19.506s 0.002s 19.537s 22 312 31.322s 0.002s 31.352s 23 38,430 1,633.575s 0.003s 1,633.914s Jan 02 00 1,272 127.597s 0.004s 127.714s 01 148 14.999s 0.002s 15.03s 02 696 69.795s 0.003s 69.825s 03 134,461 1,628.815s 0.003s 1,629.743s 04 122 12.3s 0.001s 12.314s 05 25,825 1,752.645s 0.003s 1,752.884s 06 554 55.683s 0.002s 55.714s 07 504 50.655s 0.002s 50.685s 08 510 51.171s 0.002s 51.203s 09 519 52.168s 0.003s 52.245s 10 2,609 261.291s 0.127s 261.577s 11 670 67.244s 0.018s 67.301s 12 20,439 1,619.364s 0.008s 1,619.605s 13 261,529 1,952.564s 0.376s 1,971.18s 14 2,748 267.44s 0.26s 274.631s 15 57,576 2,012.023s 0.01s 2,017.927s 16 893 89.601s 0.003s 94.98s 17 238 24.01s 0.002s 24.041s 18 450 45.263s 0.002s 45.295s 19 186 18.69s 0.003s 18.721s 20 350 35.216s 0.002s 35.307s 21 89 8.997s 0.001s 9.012s 22 57,872 2,270.226s 0.003s 2,270.43s 23 270 27.23s 0.002s 27.26s Jan 03 00 1,525 152.9s 0.004s 152.937s 01 216 21.74s 0.002s 21.77s 02 195 19.711s 0.002s 19.741s 03 289 29.129s 0.002s 29.161s 04 7,960 797.137s 0.003s 797.218s 05 337 33.84s 0.002s 33.87s 06 626 62.86s 0.004s 62.891s 07 843 84.607s 0.004s 84.679s 08 836 83.793s 0.004s 83.823s 09 242 24.426s 0.002s 24.457s 10 379 38.135s 0.002s 38.166s 11 15,787 1,509.275s 0.001s 1,509.433s 12 44,374 1,725.638s 0.006s 1,725.686s 13 1,342 134.398s 0.003s 134.432s 14 996 99.722s 0.002s 99.753s 15 978 98.051s 0.004s 98.127s 16 2,118 212.217s 0.003s 212.289s 17 548 55.053s 0.003s 55.083s 18 685 68.583s 0.003s 68.613s 19 601 60.385s 0.003s 60.416s 20 294 29.613s 0.003s 29.643s 21 218 22.02s 0.002s 22.05s 22 227 22.907s 0.002s 22.937s 23 3,899 390.471s 0.003s 390.508s Jan 04 00 3,667 416.981s 0.003s 417.056s 01 4,776 478.191s 0.003s 478.271s 02 1,823 182.748s 0.003s 182.778s 03 291 29.324s 0.002s 29.356s 04 6,645 665.679s 0.003s 665.802s 05 1,402 140.591s 0.003s 140.623s 06 224 22.525s 0.002s 22.557s 07 250 25.213s 0.002s 25.244s 08 268 27.009s 0.002s 27.04s 09 140 14.195s 0.002s 14.226s 10 481 48.353s 0.003s 48.426s 11 699 70.072s 0.004s 70.104s 12 6,227 623.923s 0.004s 624.004s 13 1,718 172.115s 0.002s 172.19s 14 527 52.961s 0.003s 52.99s 15 219 22.15s 0.002s 22.179s 16 352 35.351s 0.002s 35.382s 17 166 16.806s 0.002s 16.837s 18 394 39.552s 0.001s 39.568s 19 603,896 3,245.205s 0.005s 3,245.26s 20 163 16.506s 0.002s 16.535s 21 212 21.42s 0.003s 21.451s 22 199 20.112s 0.002s 20.143s 23 1,063 106.56s 0.001s 106.579s Day Hour Added Removed Recycled Synced files Longest sync Average sync Jan 01 00 0 0 1 60 0.001s 0.002s 01 0 0 0 29 0.001s 0.002s 02 0 0 0 27 0.001s 0.002s 03 0 0 3 42 0.001s 0.002s 04 0 0 0 32 0.001s 0.002s 05 0 0 0 28 0.001s 0.002s 06 0 0 0 30 0.001s 0.002s 07 0 0 1 36 0.001s 0.002s 08 0 0 0 58 0.001s 0.002s 09 0 0 0 123 0.001s 0.002s 10 0 0 0 110 0.001s 0.002s 11 0 0 0 17 0.001s 0.002s 12 0 0 0 25 0.001s 0.002s 13 0 0 2 65 0.001s 0.002s 14 0 0 0 31 0.001s 0.002s 15 0 0 0 21 0.001s 0.002s 16 0 0 0 29 0.001s 0.002s 17 0 0 0 18 0.001s 0.002s 18 0 0 0 15 0.001s 0.002s 19 0 0 0 23 0.001s 0.002s 20 0 0 0 16 0.001s 0.002s 21 0 0 0 20 0.001s 0.002s 22 0 0 0 27 0.001s 0.002s 23 0 0 25 39 0.001s 0.002s Jan 02 00 0 0 1 69 0.001s 0.002s 01 0 0 0 30 0.001s 0.002s 02 0 0 0 51 0.001s 0.002s 03 0 0 74 48 0.001s 0.002s 04 0 0 0 16 0.001s 0.001s 05 0 0 16 60 0.001s 0.003s 06 0 0 0 35 0.001s 0.002s 07 0 0 0 123 0.001s 0.002s 08 0 0 0 120 0.001s 0.002s 09 0 0 1 120 0.001s 0.002s 10 0 0 1 690 0.001s 0.002s 11 0 0 0 236 0.001s 0.002s 12 0 0 18 118 0.001s 0.001s 13 0 156 1,387 404 0.212s 0.008s 14 0 33 538 206 0.253s 0.005s 15 0 0 481 106 0.001s 0.002s 16 0 0 419 101 0.001s 0.002s 17 0 0 0 59 0.001s 0.002s 18 0 0 0 36 0.001s 0.002s 19 0 0 0 20 0.001s 0.002s 20 0 1 0 31 0.001s 0.002s 21 0 0 0 7 0.001s 0.001s 22 0 37 0 50 0.001s 0.003s 23 0 0 0 28 0.001s 0.002s Jan 03 00 0 1 0 77 0.001s 0.002s 01 0 0 0 35 0.001s 0.002s 02 0 0 0 31 0.001s 0.002s 03 0 0 0 36 0.001s 0.002s 04 0 4 0 48 0.001s 0.002s 05 0 0 0 34 0.001s 0.002s 06 0 0 0 72 0.001s 0.002s 07 0 1 0 145 0.001s 0.002s 08 0 0 0 112 0.001s 0.002s 09 0 0 0 32 0.001s 0.002s 10 0 0 0 125 0.001s 0.002s 11 0 39 0 33 0.001s 0.001s 12 0 0 0 167 0.001s 0.003s 13 0 1 0 130 0.001s 0.002s 14 0 0 0 48 0.001s 0.002s 15 0 1 0 25 0.001s 0.002s 16 0 1 0 36 0.001s 0.002s 17 0 0 0 24 0.001s 0.002s 18 0 0 0 28 0.001s 0.002s 19 0 0 0 17 0.001s 0.002s 20 0 0 0 16 0.001s 0.002s 21 0 0 0 17 0.001s 0.002s 22 0 0 0 18 0.001s 0.002s 23 0 2 0 28 0.001s 0.002s Jan 04 00 0 2 0 86 0.001s 0.002s 01 0 3 0 48 0.001s 0.002s 02 0 0 0 49 0.001s 0.002s 03 0 0 0 41 0.001s 0.002s 04 0 4 0 63 0.001s 0.002s 05 0 0 0 48 0.001s 0.002s 06 0 0 0 26 0.001s 0.002s 07 0 0 0 30 0.001s 0.002s 08 0 0 0 29 0.001s 0.002s 09 0 0 0 20 0.001s 0.002s 10 0 1 0 27 0.001s 0.002s 11 0 0 0 44 0.001s 0.002s 12 0 3 0 47 0.001s 0.002s 13 0 1 0 45 0.001s 0.002s 14 0 0 0 34 0.001s 0.002s 15 0 0 0 19 0.001s 0.002s 16 0 0 0 31 0.001s 0.002s 17 0 0 0 18 0.001s 0.002s 18 0 0 0 12 0.001s 0.001s 19 0 0 0 48 0.001s 0.003s 20 0 0 0 21 0.001s 0.002s 21 0 0 0 24 0.002s 0.002s 22 0 0 0 23 0.001s 0.002s 23 0 1 0 20 0.001s 0.001s Day Hour Count Avg time (sec) Jan 01 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Jan 02 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Jan 03 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Jan 04 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Jan 01 00 10,985.00 kB 34,583.00 kB 01 574.00 kB 28,202.00 kB 02 595.00 kB 22,956.50 kB 03 23,912.00 kB 33,200.50 kB 04 807.50 kB 40,033.00 kB 05 801.00 kB 32,600.00 kB 06 911.00 kB 26,575.00 kB 07 1,033.50 kB 21,699.00 kB 08 534.50 kB 17,686.00 kB 09 1,219.00 kB 14,526.50 kB 10 1,057.50 kB 12,000.50 kB 11 306.00 kB 9,795.00 kB 12 549.00 kB 8,036.00 kB 13 13,967.50 kB 26,165.00 kB 14 636.00 kB 21,316.00 kB 15 562.00 kB 17,373.00 kB 16 653.50 kB 14,172.00 kB 17 470.00 kB 11,593.00 kB 18 349.00 kB 9,458.50 kB 19 623.50 kB 7,757.00 kB 20 453.50 kB 6,388.00 kB 21 568.00 kB 5,277.50 kB 22 830.50 kB 4,433.00 kB 23 204,700.50 kB 387,947.50 kB Jan 02 00 4,341.50 kB 315,027.50 kB 01 453.50 kB 255,317.50 kB 02 2,018.50 kB 207,180.50 kB 03 605,670.50 kB 1,150,431.00 kB 04 767.00 kB 980,989.00 kB 05 85,670.67 kB 820,505.33 kB 06 927.00 kB 629,465.50 kB 07 1,769.50 kB 510,153.00 kB 08 1,727.00 kB 413,560.50 kB 09 1,743.50 kB 335,334.50 kB 10 7,906.00 kB 272,527.00 kB 11 2,020.00 kB 221,723.50 kB 12 292,573.00 kB 292,573.00 kB 13 6,322,313.50 kB 7,030,890.25 kB 14 2,943,490.33 kB 7,782,597.33 kB 15 3,936,417.50 kB 8,288,448.00 kB 16 3,698,866.00 kB 7,416,223.00 kB 17 716.50 kB 6,007,459.50 kB 18 864.00 kB 4,866,221.00 kB 19 516.00 kB 3,941,748.00 kB 20 963.00 kB 3,192,956.50 kB 21 539.00 kB 2,722,538.00 kB 22 204,583.33 kB 2,253,650.67 kB 23 702.00 kB 1,743,889.50 kB Jan 03 00 5,104.50 kB 1,413,441.50 kB 01 604.00 kB 1,145,078.50 kB 02 575.50 kB 927,627.00 kB 03 761.50 kB 751,507.50 kB 04 32,375.00 kB 614,882.00 kB 05 1,062.50 kB 498,232.50 kB 06 809.50 kB 403,722.50 kB 07 2,753.50 kB 327,466.00 kB 08 3,083.50 kB 265,910.50 kB 09 690.00 kB 215,530.50 kB 10 1,081.00 kB 174,769.00 kB 11 159,260.00 kB 164,999.00 kB 12 160,593.67 kB 428,913.33 kB 13 4,757.50 kB 329,815.50 kB 14 3,278.00 kB 267,907.00 kB 15 2,653.50 kB 217,541.00 kB 16 7,912.50 kB 177,216.00 kB 17 1,307.50 kB 144,356.50 kB 18 2,427.50 kB 117,234.50 kB 19 850.50 kB 95,276.00 kB 20 871.50 kB 77,338.50 kB 21 633.50 kB 62,767.00 kB 22 649.50 kB 50,971.00 kB 23 12,757.50 kB 42,615.50 kB Jan 04 00 15,350.50 kB 37,886.00 kB 01 23,407.50 kB 39,779.00 kB 02 5,162.00 kB 40,740.50 kB 03 477.50 kB 33,086.50 kB 04 28,895.50 kB 38,208.50 kB 05 3,478.00 kB 40,894.00 kB 06 426.00 kB 33,246.50 kB 07 445.50 kB 26,995.50 kB 08 492.50 kB 21,955.00 kB 09 223.00 kB 17,848.50 kB 10 1,024.50 kB 14,646.50 kB 11 1,708.00 kB 12,126.50 kB 12 29,154.00 kB 32,082.00 kB 13 2,178.00 kB 45,798.00 kB 14 1,470.00 kB 37,475.50 kB 15 537.50 kB 30,469.00 kB 16 767.00 kB 24,817.00 kB 17 409.50 kB 20,188.50 kB 18 662.00 kB 17,300.00 kB 19 496.33 kB 14,158.00 kB 20 412.00 kB 10,958.00 kB 21 525.00 kB 8,967.50 kB 22 487.50 kB 7,363.50 kB 23 6,192.00 kB 6,918.00 kB -
Temporary Files
Size of temporary files
Key values
- 1.49 GiB Temp Files size Peak
- 2025-01-02 14:36:57 Date
Number of temporary files
Key values
- 16 per second Temp Files Peak
- 2025-01-02 12:33:23 Date
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Jan 01 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Jan 02 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 325 5.10 GiB 16.07 MiB 13 481 21.40 GiB 45.57 MiB 14 202 19.26 GiB 97.64 MiB 15 115 5.47 GiB 48.68 MiB 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Jan 03 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Jan 04 00 6 3.09 MiB 526.67 KiB 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Queries generating the most temporary files (N)
Rank Count Total size Min size Max size Avg size Query 1 1,008 45.77 GiB 8.00 KiB 1.00 GiB 46.49 MiB select * from pgbulkload.pg_bulkload (?);-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2025-01-02 13:00:52 Duration: 4m4s
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.DUPE}');
Date: 2025-01-02 14:50:22 Duration: 1m52s
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.DUPE}');
Date: 2025-01-02 14:53:00 Duration: 1m26s
2 35 3.76 GiB 62.46 MiB 145.92 MiB 109.89 MiB vacuum full analyze db_link;-
vacuum FULL analyze db_link;
Date: 2025-01-02 15:52:48 Duration: 1m36s
-
vacuum FULL analyze db_link;
Date: 2025-01-02 15:51:29 Duration: 0ms
3 35 1.14 GiB 21.78 MiB 48.13 MiB 33.22 MiB vacuum full analyze ixn_actor;-
vacuum FULL analyze ixn_actor;
Date: 2025-01-02 15:50:26 Duration: 22s832ms
-
vacuum FULL analyze ixn_actor;
Date: 2025-01-02 15:50:09 Duration: 0ms
4 25 373.74 MiB 13.56 MiB 19.09 MiB 14.95 MiB vacuum full analyze ixn;-
vacuum FULL analyze ixn;
Date: 2025-01-02 15:50:46 Duration: 7s244ms
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vacuum FULL analyze ixn;
Date: 2025-01-02 15:50:41 Duration: 0ms
5 20 215.98 MiB 6.88 MiB 15.36 MiB 10.80 MiB vacuum full analyze term;-
vacuum FULL analyze TERM;
Date: 2025-01-02 15:50:24 Duration: 9s946ms
-
vacuum FULL analyze TERM;
Date: 2025-01-02 15:50:16 Duration: 0ms
6 6 3.09 MiB 40.00 KiB 1.19 MiB 526.67 KiB vacuum full analyze log_query;-
VACUUM FULL ANALYZE log_query;
Date: 2025-01-04 00:22:22 Duration: 0ms
Queries generating the largest temporary files
Rank Size Query 1 1.00 GiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:36:57 - Database: ctdprd51 - User: load - Application: pg_bulkload ]
2 502.55 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:36:57 ]
3 146.61 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:50:06 ]
4 146.39 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:50:06 ]
5 146.19 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:50:06 ]
6 145.92 MiB vacuum FULL analyze db_link;[ Date: 2025-01-02 15:52:33 ]
7 144.96 MiB vacuum FULL analyze db_link;[ Date: 2025-01-02 15:52:33 ]
8 144.79 MiB vacuum FULL analyze db_link;[ Date: 2025-01-02 15:52:33 ]
9 144.51 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:52:47 ]
10 144.24 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:54:15 ]
11 144.13 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:54:15 ]
12 144.12 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:54:15 ]
13 143.75 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:54:15 ]
14 143.47 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:52:47 ]
15 143.47 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:52:47 ]
16 143.18 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:52:21 ]
17 143.15 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:52:47 ]
18 143.12 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:53:49 ]
19 142.71 MiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2025-01-02 14:52:21 ]
20 142.57 MiB vacuum FULL analyze db_link;[ Date: 2025-01-02 15:52:08 ]
-
Vacuums
Vacuums / Analyzes Distribution
Key values
- 1.45 sec Highest CPU-cost vacuum
Table pub1.term_set_enrichment
Database ctdprd51 - 2025-01-04 23:43:23 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 1.45 sec Highest CPU-cost vacuum
Table pub1.term_set_enrichment
Database ctdprd51 - 2025-01-04 23:43:23 Date
Analyzes per table
Key values
- pubc.log_query (110) Main table analyzed (database ctdprd51)
- 141 analyzes Total
Table Number of analyzes ctdprd51.pubc.log_query 110 ctdprd51.pg_catalog.pg_class 3 ctdprd51.edit.db_link 2 ctdprd51.pg_catalog.pg_attribute 2 ctdprd51.edit.list_db_report 1 ctdprd51.edit.object_note 1 ctdprd51.edit.study_factor 1 ctdprd51.pub1.term_set_enrichment_agent 1 ctdprd51.edit.race 1 ctdprd51.pg_catalog.pg_description 1 ctdprd51.pg_catalog.pg_index 1 ctdprd51.pg_catalog.pg_type 1 ctdprd51.pg_catalog.pg_trigger 1 ctdprd51.edit.action_type_path 1 ctdprd51.edit.action_type 1 ctdprd51.edit.db 1 ctdprd51.edit.country 1 ctdprd51.pub1.term_set_enrichment 1 ctdprd51.edit.action_degree 1 ctdprd51.edit.actor_form_type 1 ctdprd51.pg_catalog.pg_depend 1 ctdprd51.pg_catalog.pg_attrdef 1 ctdprd51.pg_catalog.pg_constraint 1 ctdprd51.edit.evidence 1 ctdprd51.edit.db_report_site 1 ctdprd51.edit.db_report 1 ctdprd51.edit.reference_db_link 1 ctdprd51.pg_catalog.pg_shdepend 1 Total 141 Vacuums per table
Key values
- pubc.log_query (24) Main table vacuumed on database ctdprd51
- 55 vacuums Total
Index Buffer usage Skipped WAL usage Table Vacuums scans hits misses dirtied pins frozen records full page bytes ctdprd51.pubc.log_query 24 16 21,397 0 4,091 0 4,065 7,721 513 4,183,094 ctdprd51.pg_catalog.pg_statistic 5 5 2,978 0 325 0 163 1,500 298 1,293,829 ctdprd51.pg_toast.pg_toast_2619 3 3 11,964 0 2,531 0 31,218 8,687 2,286 1,375,422 ctdprd51.pg_catalog.pg_class 1 1 305 0 23 0 0 167 20 87,978 ctdprd51.pg_catalog.pg_depend 1 1 646 0 78 0 65 292 83 341,141 ctdprd51.pg_catalog.pg_constraint 1 1 286 0 22 0 0 126 21 87,131 ctdprd51.pg_catalog.pg_attrdef 1 1 94 0 5 0 0 29 4 26,830 ctdprd51.edit.reference_db_link 1 0 7,289 0 4 0 0 3,631 1 222,555 ctdprd51.pg_catalog.pg_shdepend 1 1 198 0 14 0 0 97 14 50,779 ctdprd51.edit.db_report 1 1 120 0 2 0 0 16 1 10,263 ctdprd51.edit.db_report_site 1 1 77 0 4 0 0 17 2 14,147 ctdprd51.edit.race 1 0 56 0 2 0 0 3 2 16,733 ctdprd51.edit.db_link 1 0 7,521 0 3 0 0 3,631 1 222,624 ctdprd51.edit.exp_stressor_src_type 1 0 56 0 5 0 0 3 2 13,507 ctdprd51.edit.list_db_report 1 1 69 0 5 0 0 12 2 16,737 ctdprd51.edit.action_type 1 1 195 0 5 0 0 12 2 15,769 ctdprd51.pg_catalog.pg_attribute 1 1 715 0 45 0 37 369 44 253,554 ctdprd51.pg_catalog.pg_type 1 1 159 0 27 0 0 77 25 115,565 ctdprd51.pg_catalog.pg_description 1 1 230 0 34 0 42 123 28 132,415 ctdprd51.pg_catalog.pg_index 1 1 191 0 19 0 0 92 17 82,853 ctdprd51.pg_catalog.pg_trigger 1 1 361 0 36 0 0 160 39 195,401 ctdprd51.edit.geographic_region 1 0 64 0 2 0 0 3 2 16,809 ctdprd51.edit.db 1 1 117 0 2 0 0 22 2 16,688 ctdprd51.edit.action_degree_type 1 0 82 0 2 0 0 3 2 11,713 ctdprd51.pg_toast.pg_toast_486223 1 0 36 0 4 0 0 5 1 8,621 ctdprd51.pub1.term_set_enrichment 1 0 12,716 0 6,305 0 0 6,304 3 394,176 Total 55 39 67,922 1,640 13,595 0 35,590 33,102 3,415 9,206,334 Tuples removed per table
Key values
- pubc.log_query (25835) Main table with removed tuples on database ctdprd51
- 46675 tuples Total removed
Index Tuples Pages Table Vacuums scans removed remain not yet removable removed remain ctdprd51.pubc.log_query 24 16 25,835 163,302 16 0 11,300 ctdprd51.pg_toast.pg_toast_2619 3 3 10,848 54,489 280 0 37,776 ctdprd51.pg_catalog.pg_statistic 5 5 2,362 10,577 172 0 1,450 ctdprd51.pg_catalog.pg_depend 1 1 2,116 13,798 0 0 145 ctdprd51.pg_catalog.pg_attribute 1 1 1,280 9,068 0 0 214 ctdprd51.pg_catalog.pg_description 1 1 1,143 5,281 0 0 89 ctdprd51.pg_catalog.pg_shdepend 1 1 808 2,077 0 0 22 ctdprd51.pg_catalog.pg_trigger 1 1 573 1,813 0 0 53 ctdprd51.pg_catalog.pg_type 1 1 248 1,157 0 0 35 ctdprd51.edit.list_db_report 1 1 195 183 0 0 3 ctdprd51.pg_catalog.pg_constraint 1 1 163 884 0 0 38 ctdprd51.edit.db_report_site 1 1 160 160 0 0 5 ctdprd51.edit.db_report 1 1 158 158 0 0 4 ctdprd51.pg_catalog.pg_index 1 1 146 1,168 0 3 36 ctdprd51.pg_catalog.pg_class 1 1 116 1,798 0 0 61 ctdprd51.edit.db 1 1 111 130 0 0 8 ctdprd51.edit.action_type 1 1 90 60 0 0 3 ctdprd51.edit.race 1 0 81 27 0 0 1 ctdprd51.edit.geographic_region 1 0 67 51 0 0 1 ctdprd51.edit.action_degree_type 1 0 65 13 0 0 1 ctdprd51.pg_catalog.pg_attrdef 1 1 56 232 0 1 10 ctdprd51.edit.exp_stressor_src_type 1 0 54 6 0 0 1 ctdprd51.edit.reference_db_link 1 0 0 325,873 0 0 3,630 ctdprd51.edit.db_link 1 0 0 325,873 0 0 3,630 ctdprd51.pg_toast.pg_toast_486223 1 0 0 17 0 0 4 ctdprd51.pub1.term_set_enrichment 1 0 0 2,003,766 0 0 33,157 Total 55 39 46,675 2,921,961 468 4 91,677 Pages removed per table
Key values
- pg_catalog.pg_index (3) Main table with removed pages on database ctdprd51
- 4 pages Total removed
Table Number of vacuums Index scans Tuples removed Pages removed ctdprd51.pg_catalog.pg_index 1 1 146 3 ctdprd51.pg_catalog.pg_attrdef 1 1 56 1 ctdprd51.pg_catalog.pg_class 1 1 116 0 ctdprd51.pg_catalog.pg_depend 1 1 2116 0 ctdprd51.pg_catalog.pg_constraint 1 1 163 0 ctdprd51.pg_toast.pg_toast_2619 3 3 10848 0 ctdprd51.edit.reference_db_link 1 0 0 0 ctdprd51.pg_catalog.pg_shdepend 1 1 808 0 ctdprd51.edit.db_report 1 1 158 0 ctdprd51.edit.db_report_site 1 1 160 0 ctdprd51.edit.race 1 0 81 0 ctdprd51.edit.db_link 1 0 0 0 ctdprd51.edit.exp_stressor_src_type 1 0 54 0 ctdprd51.edit.list_db_report 1 1 195 0 ctdprd51.edit.action_type 1 1 90 0 ctdprd51.pg_catalog.pg_attribute 1 1 1280 0 ctdprd51.pg_catalog.pg_type 1 1 248 0 ctdprd51.pg_catalog.pg_description 1 1 1143 0 ctdprd51.pg_catalog.pg_trigger 1 1 573 0 ctdprd51.edit.geographic_region 1 0 67 0 ctdprd51.edit.db 1 1 111 0 ctdprd51.pubc.log_query 24 16 25835 0 ctdprd51.edit.action_degree_type 1 0 65 0 ctdprd51.pg_toast.pg_toast_486223 1 0 0 0 ctdprd51.pub1.term_set_enrichment 1 0 0 0 ctdprd51.pg_catalog.pg_statistic 5 5 2362 0 Total 55 39 46,675 4 Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Jan 01 00 0 2 01 0 3 02 0 2 03 0 2 04 0 2 05 0 2 06 0 1 07 0 1 08 0 0 09 0 1 10 0 0 11 0 1 12 0 0 13 0 1 14 0 0 15 0 0 16 0 1 17 0 0 18 0 0 19 0 1 20 0 0 21 0 1 22 0 0 23 0 1 Jan 02 00 0 1 01 0 4 02 0 4 03 0 3 04 0 3 05 0 2 06 0 1 07 0 1 08 0 1 09 0 1 10 0 10 11 0 4 12 0 14 13 0 0 14 0 1 15 0 2 16 0 0 17 0 1 18 0 0 19 0 0 20 0 1 21 0 0 22 0 0 23 0 1 Jan 03 00 0 3 01 0 4 02 0 3 03 0 2 04 0 1 05 0 3 06 0 1 07 0 1 08 0 1 09 0 1 10 0 1 11 0 5 12 0 3 13 0 2 14 0 2 15 0 1 16 0 1 17 0 1 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 Jan 04 00 0 3 01 0 2 02 0 2 03 0 3 04 0 2 05 0 2 06 0 1 07 0 1 08 0 1 09 0 0 10 0 0 11 0 4 12 0 0 13 0 4 14 0 1 15 0 0 16 0 1 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 1 - 1.45 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 3,046 Total read queries
- 207 Total write queries
Queries by database
Key values
- unknown Main database
- 2,055 Requests
- 7h16m40s (unknown)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 5,219 Requests
User Request type Count Duration edit Total 6 22s211ms select 6 22s211ms editeu Total 6 14s568ms select 6 14s568ms load Total 22 1m58s select 22 1m58s postgres Total 67 32m26s copy to 67 32m26s pub2 Total 2 5s326ms ddl 2 5s326ms pubc Total 4 35s609ms others 4 35s609ms pubeu Total 2,896 12h32m55s cte 49 2m19s select 2,847 12h30m36s qaeu Total 48 2m29s cte 11 38s446ms select 37 1m50s unknown Total 5,219 15h50m55s copy to 383 2h48m32s cte 50 1m50s ddl 4 8s654ms insert 2 20s121ms others 16 5m38s select 4,764 12h54m25s Duration by user
Key values
- 15h50m55s (unknown) Main time consuming user
User Request type Count Duration edit Total 6 22s211ms select 6 22s211ms editeu Total 6 14s568ms select 6 14s568ms load Total 22 1m58s select 22 1m58s postgres Total 67 32m26s copy to 67 32m26s pub2 Total 2 5s326ms ddl 2 5s326ms pubc Total 4 35s609ms others 4 35s609ms pubeu Total 2,896 12h32m55s cte 49 2m19s select 2,847 12h30m36s qaeu Total 48 2m29s cte 11 38s446ms select 37 1m50s unknown Total 5,219 15h50m55s copy to 383 2h48m32s cte 50 1m50s ddl 4 8s654ms insert 2 20s121ms others 16 5m38s select 4,764 12h54m25s Queries by host
Key values
- unknown Main host
- 8,270 Requests
- 1d5h2m3s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 3,226 Requests
- 11h49m44s (unknown)
- Main time consuming application
Application Request type Count Duration pgAdmin 4 - CONN:1027049 Total 1 3s467ms select 1 3s467ms pgAdmin 4 - CONN:3723474 Total 1 1s379ms select 1 1s379ms pgAdmin 4 - CONN:9768100 Total 1 6s258ms select 1 6s258ms pg_bulkload Total 7 42s340ms select 7 42s340ms pg_dump Total 25 12m7s copy to 25 12m7s psql Total 3 20s467ms ddl 1 2s663ms others 2 17s804ms unknown Total 3,226 11h49m44s copy to 137 57m16s cte 41 1m49s ddl 2 4s327ms insert 1 10s60ms others 9 2m55s select 3,036 10h47m29s Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2025-01-01 01:41:04 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 3,086 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 3h3m SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'gene'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'NEUROTOXICITY SYNDROMES' AND t.object_type_id = 3)))) ORDER BY g.nm_sort, g.id LIMIT 50;[ Date: 2025-01-04 14:27:17 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
2 2h14m32s SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' OR tp.nm = 'gene' OR tp.nm = 'mRNA'))) AND gcr.gene_id = ANY (ARRAY ( SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops', 'COGNITIVE & IMPAIRMENT | ALZHEIMER & S & DISEASE')))) ORDER BY g.nm_sort, g.id LIMIT 50;[ Date: 2025-01-01 05:07:09 - Bind query: yes ]
3 33m43s SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'gene'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'NEUROTOXICITY SYNDROMES' AND t.object_type_id = 3))) AND gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '10116' AND n.dag_id = 7))) ORDER BY g.nm_sort, g.id LIMIT 50;[ Date: 2025-01-04 12:00:16 - Bind query: yes ]
4 23m55s COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2025-01-04 19:00:55 ]
5 22m20s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2025-01-04 00:22:22 ]
6 22m20s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2025-01-01 00:22:22 ]
7 22m10s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2025-01-03 00:22:11 ]
8 22m7s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2025-01-02 00:22:08 ]
9 17m37s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1245241') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-01-01 05:52:36 - Bind query: yes ]
10 17m36s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1245241') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-01-01 05:52:30 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
11 17m34s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1245241') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-01-04 00:20:13 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
12 6m55s COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2025-01-04 19:12:51 ]
13 4m51s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1240386') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-01-01 14:35:17 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
14 4m4s SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');[ Date: 2025-01-02 13:00:52 - Bind query: yes ]
15 2m3s COPY pub1.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2025-01-04 19:15:21 ]
16 1m52s SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.DUPE}');[ Date: 2025-01-02 14:50:22 - Bind query: yes ]
17 1m36s vacuum FULL analyze db_link;[ Date: 2025-01-02 15:52:48 ]
18 1m31s COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;[ Date: 2025-01-04 19:04:01 ]
19 1m27s SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1276072')) ORDER BY r.sort_txt LIMIT 50;[ Date: 2025-01-04 12:40:38 - Bind query: yes ]
20 1m26s SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.DUPE}');[ Date: 2025-01-02 14:53:00 - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 3h3m 1 3h3m 3h3m 3h3m select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?)))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jan 04 14 1 3h3m 3h3m [ User: pubeu - Total duration: 3h3m - Times executed: 1 ]
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'gene'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'NEUROTOXICITY SYNDROMES' AND t.object_type_id = 3)))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-01-04 14:27:17 Duration: 3h3m Database: ctdprd51 User: pubeu Bind query: yes
2 2h14m32s 1 2h14m32s 2h14m32s 2h14m32s select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ? or tp.nm = ? or tp.nm = ?))) and gcr.gene_id = any (array ( select gd.gene_id from term d inner join gene_disease gd on d.id = gd.disease_id where d.nm_fts @@ to_tsquery(?, ?)))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jan 01 05 1 2h14m32s 2h14m32s -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' OR tp.nm = 'gene' OR tp.nm = 'mRNA'))) AND gcr.gene_id = ANY (ARRAY ( SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops', 'COGNITIVE & IMPAIRMENT | ALZHEIMER & S & DISEASE')))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-01-01 05:07:09 Duration: 2h14m32s Bind query: yes
3 1h28m59s 4 22m7s 22m20s 22m14s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jan 01 00 1 22m20s 22m20s Jan 02 00 1 22m7s 22m7s Jan 03 00 1 22m10s 22m10s Jan 04 00 1 22m20s 22m20s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-01-04 00:22:22 Duration: 22m20s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-01-01 00:22:22 Duration: 22m20s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-01-03 00:22:11 Duration: 22m10s
4 57m51s 10 1s434ms 17m37s 5m47s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jan 01 01 1 1s434ms 1s434ms 05 2 35m14s 17m37s 14 1 4m51s 4m51s Jan 02 23 1 1s538ms 1s538ms Jan 03 02 1 3s219ms 3s219ms 17 1 1s471ms 1s471ms 19 1 1s908ms 1s908ms Jan 04 00 1 17m34s 17m34s 03 1 1s516ms 1s516ms [ User: pubeu - Total duration: 40m7s - Times executed: 6 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1245241') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-01-01 05:52:36 Duration: 17m37s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1245241') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-01-01 05:52:30 Duration: 17m36s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1245241') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-01-04 00:20:13 Duration: 17m34s Database: ctdprd51 User: pubeu Bind query: yes
5 33m43s 1 33m43s 33m43s 33m43s select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jan 04 12 1 33m43s 33m43s -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'gene'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'NEUROTOXICITY SYNDROMES' AND t.object_type_id = 3))) AND gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '10116' AND n.dag_id = 7))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-01-04 12:00:16 Duration: 33m43s Bind query: yes
6 23m55s 1 23m55s 23m55s 23m55s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jan 04 19 1 23m55s 23m55s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2025-01-04 19:00:55 Duration: 23m55s
7 22m26s 40 1s3ms 4m4s 33s667ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jan 02 12 14 2m4s 8s890ms 13 17 11m57s 42s229ms 14 9 8m24s 56s36ms [ User: load - Total duration: 42s340ms - Times executed: 7 ]
[ Application: pg_bulkload - Total duration: 42s340ms - Times executed: 7 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2025-01-02 13:00:52 Duration: 4m4s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.DUPE}');
Date: 2025-01-02 14:50:22 Duration: 1m52s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.DUPE}');
Date: 2025-01-02 14:53:00 Duration: 1m26s Bind query: yes
8 16m40s 260 3s705ms 5s468ms 3s848ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jan 01 00 1 3s907ms 3s907ms 01 1 3s950ms 3s950ms 03 3 11s752ms 3s917ms 04 3 11s685ms 3s895ms 05 3 13s266ms 4s422ms 07 2 7s497ms 3s748ms 08 2 7s696ms 3s848ms 10 1 3s867ms 3s867ms 11 5 19s115ms 3s823ms 12 2 7s946ms 3s973ms 13 2 7s716ms 3s858ms 15 1 3s775ms 3s775ms 16 2 7s779ms 3s889ms 20 1 3s781ms 3s781ms 22 1 3s733ms 3s733ms Jan 02 01 31 1m58s 3s819ms 02 9 34s681ms 3s853ms 03 15 57s660ms 3s844ms 04 27 1m43s 3s841ms 05 3 11s749ms 3s916ms 06 1 3s789ms 3s789ms 08 5 19s177ms 3s835ms 09 1 3s869ms 3s869ms 10 2 8s152ms 4s76ms 12 2 7s832ms 3s916ms 13 2 8s136ms 4s68ms 14 2 7s595ms 3s797ms 15 2 7s571ms 3s785ms 16 1 3s812ms 3s812ms 17 2 7s599ms 3s799ms 19 2 7s620ms 3s810ms 20 20 1m15s 3s789ms 21 47 2m59s 3s812ms Jan 03 01 7 26s887ms 3s841ms 02 3 11s523ms 3s841ms 04 4 15s259ms 3s814ms 05 3 11s708ms 3s902ms 06 2 7s554ms 3s777ms 09 4 15s778ms 3s944ms 10 2 7s586ms 3s793ms 12 2 9s291ms 4s645ms 13 2 7s636ms 3s818ms 14 2 7s617ms 3s808ms 16 1 3s797ms 3s797ms 18 3 11s508ms 3s836ms 23 2 7s505ms 3s752ms Jan 04 00 1 3s851ms 3s851ms 02 1 3s977ms 3s977ms 03 1 3s801ms 3s801ms 04 2 7s636ms 3s818ms 05 5 19s206ms 3s841ms 06 2 7s762ms 3s881ms 07 2 7s615ms 3s807ms 10 1 3s831ms 3s831ms 11 1 3s950ms 3s950ms 13 1 3s816ms 3s816ms 16 1 3s927ms 3s927ms 22 1 3s711ms 3s711ms [ User: pubeu - Total duration: 6m22s - Times executed: 99 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343306') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343306') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-01-03 12:54:47 Duration: 5s468ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1408304') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1408304') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-01-01 05:37:09 Duration: 4s907ms Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1339574') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1339574') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-01-01 05:34:58 Duration: 4s485ms Database: ctdprd51 User: pubeu Bind query: yes
9 12m57s 700 1s15ms 1s323ms 1s110ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jan 01 00 8 8s654ms 1s81ms 01 7 7s709ms 1s101ms 02 4 4s423ms 1s105ms 03 5 5s503ms 1s100ms 04 7 7s743ms 1s106ms 05 9 10s165ms 1s129ms 06 8 8s663ms 1s82ms 07 4 4s289ms 1s72ms 08 9 9s785ms 1s87ms 09 2 2s293ms 1s146ms 10 5 5s365ms 1s73ms 11 9 9s742ms 1s82ms 12 7 7s582ms 1s83ms 13 7 7s538ms 1s76ms 14 4 4s323ms 1s80ms 15 5 5s337ms 1s67ms 16 6 6s476ms 1s79ms 17 4 4s377ms 1s94ms 18 6 6s339ms 1s56ms 19 9 9s448ms 1s49ms 20 7 7s640ms 1s91ms 21 9 9s664ms 1s73ms 22 11 12s163ms 1s105ms 23 7 7s510ms 1s72ms Jan 02 00 7 7s621ms 1s88ms 01 7 7s562ms 1s80ms 02 5 5s428ms 1s85ms 03 14 15s144ms 1s81ms 04 4 4s359ms 1s89ms 05 13 14s303ms 1s100ms 06 4 4s348ms 1s87ms 07 3 3s102ms 1s34ms 08 10 10s843ms 1s84ms 09 8 8s454ms 1s56ms 10 6 6s643ms 1s107ms 11 3 3s428ms 1s142ms 12 1 1s135ms 1s135ms 13 7 7s965ms 1s137ms 14 7 7s783ms 1s111ms 15 13 14s634ms 1s125ms 16 8 8s920ms 1s115ms 17 6 6s833ms 1s138ms 18 10 11s328ms 1s132ms 19 8 8s919ms 1s114ms 20 11 12s246ms 1s113ms 21 15 16s894ms 1s126ms 22 6 6s598ms 1s99ms 23 7 7s924ms 1s132ms Jan 03 00 9 10s123ms 1s124ms 01 7 7s953ms 1s136ms 02 9 9s802ms 1s89ms 03 6 6s802ms 1s133ms 04 7 7s975ms 1s139ms 05 17 19s420ms 1s142ms 06 12 13s587ms 1s132ms 07 13 14s533ms 1s117ms 08 15 16s757ms 1s117ms 09 10 11s203ms 1s120ms 10 6 6s608ms 1s101ms 11 4 4s339ms 1s84ms 12 6 6s618ms 1s103ms 13 10 11s342ms 1s134ms 14 6 6s669ms 1s111ms 15 4 4s461ms 1s115ms 16 4 4s348ms 1s87ms 17 5 5s583ms 1s116ms 18 9 9s723ms 1s80ms 19 8 8s724ms 1s90ms 20 9 9s841ms 1s93ms 21 6 6s587ms 1s97ms 22 5 5s655ms 1s131ms 23 12 13s760ms 1s146ms Jan 04 00 2 2s310ms 1s155ms 01 5 5s700ms 1s140ms 02 7 7s957ms 1s136ms 03 10 11s109ms 1s110ms 04 11 12s522ms 1s138ms 05 10 11s413ms 1s141ms 06 1 1s154ms 1s154ms 07 7 8s112ms 1s158ms 08 16 18s157ms 1s134ms 09 2 2s261ms 1s130ms 10 10 11s318ms 1s131ms 11 7 8s64ms 1s152ms 12 5 6s81ms 1s216ms 13 2 2s411ms 1s205ms 14 17 19s26ms 1s119ms 15 8 9s242ms 1s155ms 16 4 4s602ms 1s150ms 17 2 2s267ms 1s133ms 18 2 2s309ms 1s154ms 19 8 8s603ms 1s75ms 20 2 2s158ms 1s79ms 21 11 11s792ms 1s72ms 22 2 2s353ms 1s176ms 23 8 9s94ms 1s136ms [ User: pubeu - Total duration: 5m9s - Times executed: 279 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1606959' or receptorTerm.id = '1606959' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-04 12:30:40 Duration: 1s323ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1933265' or receptorTerm.id = '1933265' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-04 12:11:16 Duration: 1s296ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1789452' or receptorTerm.id = '1789452' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-01 22:00:37 Duration: 1s285ms Database: ctdprd51 User: pubeu Bind query: yes
10 11m27s 59 11s102ms 14s170ms 11s649ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and baseterm.id in ( select term_id from term_label tl where upper(tl.nm) = ? and tl.object_type_id = ?)) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jan 01 14 1 11s178ms 11s178ms 15 3 33s455ms 11s151ms 16 9 1m40s 11s184ms 20 2 22s385ms 11s192ms 21 9 1m45s 11s708ms 23 19 3m44s 11s794ms Jan 02 12 14 2m47s 11s940ms 13 2 23s8ms 11s504ms [ User: pubeu - Total duration: 6m20s - Times executed: 32 ]
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'ETHANOL' AND tl.object_type_id = 2)) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2025-01-01 23:29:51 Duration: 14s170ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'ETHANOL' AND tl.object_type_id = 2)) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2025-01-01 23:29:51 Duration: 13s454ms Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'ETHANOL' AND tl.object_type_id = 2)) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2025-01-02 12:35:11 Duration: 13s409ms Database: ctdprd51 User: pubeu Bind query: yes
11 9m42s 482 1s89ms 1s697ms 1s207ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jan 01 00 4 4s733ms 1s183ms 01 3 3s527ms 1s175ms 02 6 7s54ms 1s175ms 03 1 1s204ms 1s204ms 04 3 3s741ms 1s247ms 05 6 7s592ms 1s265ms 06 6 7s51ms 1s175ms 07 3 3s551ms 1s183ms 08 1 1s144ms 1s144ms 09 2 2s295ms 1s147ms 10 5 5s889ms 1s177ms 11 4 4s614ms 1s153ms 12 1 1s142ms 1s142ms 14 3 3s605ms 1s201ms 15 6 6s850ms 1s141ms 16 10 11s611ms 1s161ms 17 5 5s918ms 1s183ms 18 3 3s401ms 1s133ms 19 5 5s889ms 1s177ms 20 4 4s609ms 1s152ms 21 6 7s15ms 1s169ms 22 3 3s641ms 1s213ms 23 3 3s561ms 1s187ms Jan 02 00 7 8s378ms 1s196ms 01 4 4s835ms 1s208ms 02 4 4s804ms 1s201ms 03 9 10s673ms 1s185ms 04 3 3s545ms 1s181ms 05 8 9s593ms 1s199ms 06 4 4s641ms 1s160ms 07 3 3s543ms 1s181ms 08 4 4s609ms 1s152ms 09 6 6s970ms 1s161ms 10 2 2s305ms 1s152ms 11 3 3s649ms 1s216ms 12 7 8s617ms 1s231ms 13 4 5s69ms 1s267ms 14 6 7s543ms 1s257ms 15 6 7s343ms 1s223ms 16 4 4s970ms 1s242ms 17 3 3s754ms 1s251ms 18 3 3s665ms 1s221ms 19 5 6s102ms 1s220ms 20 6 7s266ms 1s211ms 21 7 8s739ms 1s248ms 22 7 8s364ms 1s194ms 23 5 6s36ms 1s207ms Jan 03 00 15 18s344ms 1s222ms 01 3 3s645ms 1s215ms 02 3 3s730ms 1s243ms 03 6 7s403ms 1s233ms 04 5 6s 1s200ms 05 11 13s734ms 1s248ms 06 10 11s989ms 1s198ms 07 10 12s195ms 1s219ms 08 10 12s254ms 1s225ms 09 6 7s283ms 1s213ms 10 5 6s275ms 1s255ms 11 1 1s205ms 1s205ms 12 5 6s35ms 1s207ms 13 13 15s978ms 1s229ms 14 2 2s435ms 1s217ms 15 1 1s225ms 1s225ms 16 5 6s71ms 1s214ms 17 1 1s226ms 1s226ms 18 7 8s384ms 1s197ms 19 11 12s966ms 1s178ms 20 4 4s687ms 1s171ms 21 4 4s764ms 1s191ms 22 4 4s921ms 1s230ms 23 11 13s442ms 1s222ms Jan 04 00 4 4s859ms 1s214ms 01 1 1s224ms 1s224ms 02 4 4s818ms 1s204ms 03 10 11s936ms 1s193ms 04 7 8s502ms 1s214ms 05 8 9s933ms 1s241ms 06 5 6s301ms 1s260ms 07 5 6s268ms 1s253ms 08 9 11s135ms 1s237ms 10 10 12s318ms 1s231ms 11 1 1s243ms 1s243ms 12 2 2s430ms 1s215ms 13 2 2s984ms 1s492ms 14 15 18s222ms 1s214ms 16 2 2s413ms 1s206ms 17 2 2s536ms 1s268ms 19 14 16s421ms 1s172ms 20 2 2s324ms 1s162ms 21 8 9s271ms 1s158ms 22 1 1s227ms 1s227ms 23 4 4s935ms 1s233ms [ User: pubeu - Total duration: 3m34s - Times executed: 177 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1217121') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1217121') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-04 13:11:41 Duration: 1s697ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1221432') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1221432') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-03 05:38:34 Duration: 1s362ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1221432') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1221432') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-03 05:43:38 Duration: 1s356ms Bind query: yes
12 9m40s 13 44s455ms 44s778ms 44s632ms copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jan 01 06 1 44s703ms 44s703ms 10 1 44s718ms 44s718ms 14 1 44s455ms 44s455ms 18 1 44s646ms 44s646ms Jan 02 06 1 44s502ms 44s502ms 10 1 44s554ms 44s554ms 14 1 44s609ms 44s609ms 18 1 44s737ms 44s737ms Jan 03 06 1 44s628ms 44s628ms 10 1 44s778ms 44s778ms 14 1 44s661ms 44s661ms 18 1 44s694ms 44s694ms Jan 04 19 1 44s537ms 44s537ms [ User: postgres - Total duration: 8m55s - Times executed: 12 ]
[ Application: pg_dump - Total duration: 8m55s - Times executed: 12 ]
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-01-03 10:05:46 Duration: 44s778ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-01-02 18:05:46 Duration: 44s737ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-01-01 10:05:46 Duration: 44s718ms Database: ctdprd51 User: postgres Application: pg_dump
13 9m35s 122 1s5ms 5s590ms 4s718ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jan 01 02 2 9s375ms 4s687ms 03 6 26s615ms 4s435ms 05 1 4s676ms 4s676ms 06 2 9s14ms 4s507ms 09 4 19s551ms 4s887ms 11 1 4s796ms 4s796ms 12 2 9s163ms 4s581ms 19 1 4s524ms 4s524ms 20 4 19s499ms 4s874ms 21 1 4s947ms 4s947ms 22 7 34s271ms 4s895ms 23 2 9s532ms 4s766ms Jan 02 00 6 29s492ms 4s915ms 01 3 14s239ms 4s746ms 02 1 4s556ms 4s556ms 04 2 10s570ms 5s285ms 05 4 19s771ms 4s942ms 07 3 14s418ms 4s806ms 11 2 9s76ms 4s538ms 12 1 5s65ms 5s65ms 14 1 4s656ms 4s656ms 16 1 4s509ms 4s509ms 17 4 18s821ms 4s705ms 18 1 4s855ms 4s855ms 19 2 9s517ms 4s758ms 20 1 4s469ms 4s469ms 22 3 13s480ms 4s493ms Jan 03 00 1 4s404ms 4s404ms 01 2 8s988ms 4s494ms 04 1 4s934ms 4s934ms 05 3 14s48ms 4s682ms 06 1 4s569ms 4s569ms 07 1 4s925ms 4s925ms 08 2 9s402ms 4s701ms 09 2 6s58ms 3s29ms 12 2 9s726ms 4s863ms 13 1 5s104ms 5s104ms 14 5 24s180ms 4s836ms 15 3 14s671ms 4s890ms 16 1 4s662ms 4s662ms 22 2 9s773ms 4s886ms Jan 04 02 3 14s203ms 4s734ms 04 7 34s131ms 4s875ms 05 2 9s407ms 4s703ms 07 1 4s650ms 4s650ms 08 1 4s628ms 4s628ms 09 1 4s947ms 4s947ms 10 1 4s912ms 4s912ms 11 1 5s492ms 5s492ms 13 5 20s502ms 4s100ms 14 3 13s676ms 4s558ms 16 1 5s56ms 5s56ms 20 1 5s72ms 5s72ms [ User: pubeu - Total duration: 3m47s - Times executed: 48 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1265875' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-01-02 04:32:51 Duration: 5s590ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1312015' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-01-04 11:36:29 Duration: 5s492ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1299386' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-01-03 15:11:51 Duration: 5s319ms Bind query: yes
14 7m34s 112 1s 27s42ms 4s53ms select ? "Input", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( select string_agg(stm.slim_term_nm, ? order by stm.slim_term_nm) from slim_term_mapping stm where stm.mapped_term_id = d.id) "DiseaseCategories", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(distinct r.acc_txt, ?) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id where (d.id = ?) group by g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by d.nm_sort, g.nm, "DirectEvidence", c.nm;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jan 02 06 112 7m34s 4s53ms [ User: pubeu - Total duration: 1m28s - Times executed: 18 ]
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'mesh:d011297' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2086743) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-01-02 06:19:09 Duration: 27s42ms Bind query: yes
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'mesh:d015431' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2087991) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-01-02 06:15:35 Duration: 20s221ms Bind query: yes
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'mesh:d009336' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2084416) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-01-02 06:12:51 Duration: 19s475ms Bind query: yes
15 6m55s 1 6m55s 6m55s 6m55s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jan 04 19 1 6m55s 6m55s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2025-01-04 19:12:51 Duration: 6m55s
16 6m16s 138 1s52ms 6s413ms 2s726ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where associatedterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jan 01 03 10 24s917ms 2s491ms 05 1 1s52ms 1s52ms 20 10 25s121ms 2s512ms Jan 02 14 1 6s413ms 6s413ms 17 10 24s811ms 2s481ms Jan 03 06 1 1s839ms 1s839ms 07 2 3s760ms 1s880ms 08 3 9s702ms 3s234ms 09 2 3s599ms 1s799ms 10 1 1s750ms 1s750ms 11 3 7s551ms 2s517ms 12 7 29s949ms 4s278ms 13 1 1s734ms 1s734ms 14 18 48s573ms 2s698ms 15 4 15s993ms 3s998ms 16 1 1s930ms 1s930ms 17 1 1s794ms 1s794ms 18 2 8s994ms 4s497ms 19 2 4s88ms 2s44ms 20 3 5s500ms 1s833ms 21 2 8s761ms 4s380ms 22 5 14s639ms 2s927ms 23 3 8s314ms 2s771ms Jan 04 00 4 7s935ms 1s983ms 01 6 16s726ms 2s787ms 03 1 1s847ms 1s847ms 04 2 4s923ms 2s461ms 05 3 9s35ms 3s11ms 06 3 8s546ms 2s848ms 07 6 17s580ms 2s930ms 09 2 4s227ms 2s113ms 10 2 7s434ms 3s717ms 11 2 3s829ms 1s914ms 12 2 4s802ms 2s401ms 13 10 25s278ms 2s527ms 15 1 1s323ms 1s323ms 20 1 2s31ms 2s31ms [ User: pubeu - Total duration: 2m10s - Times executed: 50 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-01-02 14:34:28 Duration: 6s413ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-01-04 13:48:11 Duration: 6s331ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-01-03 15:52:39 Duration: 6s256ms Database: ctdprd51 User: pubeu Bind query: yes
17 5m20s 120 1s116ms 4s740ms 2s673ms select e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, ( select string_agg(distinct stressorterm.nm || ? || ( select cd from object_type where id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?)) as stressoragents, ( select string_agg(distinct coalesce(receptorterm.nm, ?) || ? || coalesce(( select cd from object_type where id = receptorterm.object_type_id), ?) || ? || coalesce(receptorterm.nm_html, ?) || ? || coalesce(receptorterm.acc_txt, ?) || ? || coalesce(receptorterm.acc_db_cd, ?) || ? || receptor.description, ?)) as receptors, ( select string_agg(distinct country.nm, ?)) as studycountries, ( select string_agg(distinct location.locality_txt, ?)) as localities, ( select string_agg(distinct event.medium_nm || ? || coalesce(event.medium_term_acc_txt, ?), ?)) as assaymediums, ( select string_agg(distinct exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?)) as assayedmarkers, ( select string_agg(distinct diseaseterm.nm || ? || ( select cd from object_type where id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?)) as diseases, ( select string_agg(distinct phenotypeterm.nm || ? || ( select cd from object_type where id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?)) as phenotypes, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, re.author_summary summary, count(*) over () fullrowcount from exposure e inner join reference r on e.reference_id = r.id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join term receptorterm on receptor.term_id = receptorterm.id left outer join exp_event event on e.exp_event_id = event.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join exp_event_location location on e.exp_event_id = location.exp_event_id left outer join country on location.country_id = country.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id inner join reference_exp re on e.reference_id = re.reference_id left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id where e.reference_id = any (array ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like ?) and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressoragents limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jan 01 03 10 25s504ms 2s550ms 05 2 9s37ms 4s518ms 20 9 22s418ms 2s490ms Jan 02 14 3 7s948ms 2s649ms 17 9 21s876ms 2s430ms Jan 03 07 2 4s203ms 2s101ms 08 2 3s537ms 1s768ms 09 2 3s266ms 1s633ms 11 1 3s372ms 3s372ms 12 4 13s316ms 3s329ms 13 2 4s181ms 2s90ms 14 12 30s660ms 2s555ms 15 1 1s127ms 1s127ms 16 2 7s12ms 3s506ms 17 4 11s119ms 2s779ms 18 3 10s180ms 3s393ms 19 2 7s38ms 3s519ms 20 4 7s132ms 1s783ms 21 5 14s38ms 2s807ms 22 1 1s116ms 1s116ms 23 2 4s158ms 2s79ms Jan 04 00 2 5s492ms 2s746ms 01 3 9s170ms 3s56ms 03 3 13s651ms 4s550ms 04 3 12s273ms 4s91ms 05 5 9s280ms 1s856ms 06 1 2s213ms 2s213ms 07 3 5s543ms 1s847ms 08 1 1s183ms 1s183ms 09 2 6s190ms 3s95ms 10 3 11s280ms 3s760ms 11 1 2s447ms 2s447ms 13 10 25s514ms 2s551ms 14 1 4s339ms 4s339ms [ User: pubeu - Total duration: 2m15s - Times executed: 47 ]
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-01-02 14:34:35 Duration: 4s740ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-01-04 13:48:16 Duration: 4s676ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-01-03 19:46:17 Duration: 4s672ms Bind query: yes
18 4m25s 52 1s8ms 43s73ms 5s110ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jan 01 04 1 19s277ms 19s277ms 09 1 3s305ms 3s305ms 10 1 7s181ms 7s181ms 20 3 32s162ms 10s720ms 21 7 1m7s 9s623ms Jan 02 01 1 1s542ms 1s542ms 03 1 1s50ms 1s50ms 08 1 1s30ms 1s30ms 09 1 7s136ms 7s136ms 13 1 1s524ms 1s524ms Jan 03 01 1 1s49ms 1s49ms 06 6 17s281ms 2s880ms 10 1 1s382ms 1s382ms 11 16 36s144ms 2s259ms 14 1 1s559ms 1s559ms 15 1 14s461ms 14s461ms Jan 04 02 1 2s188ms 2s188ms 05 1 1s48ms 1s48ms 06 1 1s41ms 1s41ms 07 1 1s27ms 1s27ms 11 1 43s73ms 43s73ms 19 1 1s880ms 1s880ms 21 2 2s19ms 1s9ms [ User: pubeu - Total duration: 1m28s - Times executed: 24 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2083856') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-01-04 11:16:45 Duration: 43s73ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2084331') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-01-01 21:30:15 Duration: 30s179ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2084331') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-01-01 20:43:22 Duration: 30s2ms Bind query: yes
19 3m13s 157 1s100ms 1s799ms 1s231ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jan 01 00 2 2s359ms 1s179ms 01 1 1s148ms 1s148ms 02 2 2s291ms 1s145ms 03 1 1s265ms 1s265ms 04 2 2s374ms 1s187ms 05 4 5s17ms 1s254ms 07 1 1s237ms 1s237ms 12 2 2s297ms 1s148ms 13 1 1s185ms 1s185ms 14 1 1s263ms 1s263ms 15 1 1s106ms 1s106ms 18 1 1s157ms 1s157ms 19 2 2s246ms 1s123ms 20 3 3s459ms 1s153ms 21 5 5s795ms 1s159ms Jan 02 00 1 1s161ms 1s161ms 01 1 1s168ms 1s168ms 02 6 7s129ms 1s188ms 03 2 2s350ms 1s175ms 04 2 2s384ms 1s192ms 05 3 3s755ms 1s251ms 06 2 2s248ms 1s124ms 07 1 1s193ms 1s193ms 08 2 2s313ms 1s156ms 09 5 5s759ms 1s151ms 10 2 2s431ms 1s215ms 11 4 4s884ms 1s221ms 13 1 1s222ms 1s222ms 14 3 3s691ms 1s230ms 15 2 2s536ms 1s268ms 16 3 3s804ms 1s268ms 17 2 2s393ms 1s196ms 18 4 4s925ms 1s231ms 19 1 1s242ms 1s242ms 20 1 1s269ms 1s269ms 21 2 2s370ms 1s185ms 22 1 1s465ms 1s465ms 23 1 1s245ms 1s245ms Jan 03 00 3 4s188ms 1s396ms 01 3 3s712ms 1s237ms 02 2 2s320ms 1s160ms 04 4 4s937ms 1s234ms 05 6 7s658ms 1s276ms 06 1 1s298ms 1s298ms 07 3 3s643ms 1s214ms 08 2 2s472ms 1s236ms 09 5 6s81ms 1s216ms 11 3 3s928ms 1s309ms 12 1 1s306ms 1s306ms 13 2 2s373ms 1s186ms 15 1 1s167ms 1s167ms 16 1 1s226ms 1s226ms 19 2 2s280ms 1s140ms 21 2 2s326ms 1s163ms 22 2 2s683ms 1s341ms 23 1 1s244ms 1s244ms Jan 04 02 1 1s250ms 1s250ms 03 3 3s699ms 1s233ms 04 2 2s582ms 1s291ms 05 3 3s999ms 1s333ms 06 1 1s282ms 1s282ms 08 2 2s516ms 1s258ms 09 1 1s290ms 1s290ms 11 1 1s180ms 1s180ms 12 1 1s262ms 1s262ms 13 1 1s259ms 1s259ms 14 4 5s696ms 1s424ms 15 3 3s708ms 1s236ms 19 4 4s853ms 1s213ms 21 1 1s157ms 1s157ms 22 2 2s815ms 1s407ms 23 2 2s763ms 1s381ms [ User: pubeu - Total duration: 1m8s - Times executed: 56 ]
[ User: qaeu - Total duration: 4s6ms - Times executed: 3 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2085788') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2085788') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-03 00:13:32 Duration: 1s799ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2091319') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2091319') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-04 14:11:11 Duration: 1s530ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2086910') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2086910') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-04 14:08:07 Duration: 1s502ms Database: ctdprd51 User: pubeu Bind query: yes
20 3m11s 13 12s722ms 15s22ms 14s760ms copy edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jan 01 06 1 14s896ms 14s896ms 10 1 14s832ms 14s832ms 14 1 15s22ms 15s22ms 18 1 14s911ms 14s911ms Jan 02 06 1 14s863ms 14s863ms 10 1 14s914ms 14s914ms 14 1 12s722ms 12s722ms 18 1 14s965ms 14s965ms Jan 03 06 1 15s6ms 15s6ms 10 1 14s955ms 14s955ms 14 1 14s993ms 14s993ms 18 1 14s947ms 14s947ms Jan 04 18 1 14s853ms 14s853ms [ User: postgres - Total duration: 3m11s - Times executed: 13 ]
[ Application: pg_dump - Total duration: 3m11s - Times executed: 13 ]
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2025-01-01 14:00:16 Duration: 15s22ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2025-01-03 06:00:17 Duration: 15s6ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2025-01-03 14:00:17 Duration: 14s993ms Database: ctdprd51 User: postgres Application: pg_dump
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 700 12m57s 1s15ms 1s323ms 1s110ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jan 01 00 8 8s654ms 1s81ms 01 7 7s709ms 1s101ms 02 4 4s423ms 1s105ms 03 5 5s503ms 1s100ms 04 7 7s743ms 1s106ms 05 9 10s165ms 1s129ms 06 8 8s663ms 1s82ms 07 4 4s289ms 1s72ms 08 9 9s785ms 1s87ms 09 2 2s293ms 1s146ms 10 5 5s365ms 1s73ms 11 9 9s742ms 1s82ms 12 7 7s582ms 1s83ms 13 7 7s538ms 1s76ms 14 4 4s323ms 1s80ms 15 5 5s337ms 1s67ms 16 6 6s476ms 1s79ms 17 4 4s377ms 1s94ms 18 6 6s339ms 1s56ms 19 9 9s448ms 1s49ms 20 7 7s640ms 1s91ms 21 9 9s664ms 1s73ms 22 11 12s163ms 1s105ms 23 7 7s510ms 1s72ms Jan 02 00 7 7s621ms 1s88ms 01 7 7s562ms 1s80ms 02 5 5s428ms 1s85ms 03 14 15s144ms 1s81ms 04 4 4s359ms 1s89ms 05 13 14s303ms 1s100ms 06 4 4s348ms 1s87ms 07 3 3s102ms 1s34ms 08 10 10s843ms 1s84ms 09 8 8s454ms 1s56ms 10 6 6s643ms 1s107ms 11 3 3s428ms 1s142ms 12 1 1s135ms 1s135ms 13 7 7s965ms 1s137ms 14 7 7s783ms 1s111ms 15 13 14s634ms 1s125ms 16 8 8s920ms 1s115ms 17 6 6s833ms 1s138ms 18 10 11s328ms 1s132ms 19 8 8s919ms 1s114ms 20 11 12s246ms 1s113ms 21 15 16s894ms 1s126ms 22 6 6s598ms 1s99ms 23 7 7s924ms 1s132ms Jan 03 00 9 10s123ms 1s124ms 01 7 7s953ms 1s136ms 02 9 9s802ms 1s89ms 03 6 6s802ms 1s133ms 04 7 7s975ms 1s139ms 05 17 19s420ms 1s142ms 06 12 13s587ms 1s132ms 07 13 14s533ms 1s117ms 08 15 16s757ms 1s117ms 09 10 11s203ms 1s120ms 10 6 6s608ms 1s101ms 11 4 4s339ms 1s84ms 12 6 6s618ms 1s103ms 13 10 11s342ms 1s134ms 14 6 6s669ms 1s111ms 15 4 4s461ms 1s115ms 16 4 4s348ms 1s87ms 17 5 5s583ms 1s116ms 18 9 9s723ms 1s80ms 19 8 8s724ms 1s90ms 20 9 9s841ms 1s93ms 21 6 6s587ms 1s97ms 22 5 5s655ms 1s131ms 23 12 13s760ms 1s146ms Jan 04 00 2 2s310ms 1s155ms 01 5 5s700ms 1s140ms 02 7 7s957ms 1s136ms 03 10 11s109ms 1s110ms 04 11 12s522ms 1s138ms 05 10 11s413ms 1s141ms 06 1 1s154ms 1s154ms 07 7 8s112ms 1s158ms 08 16 18s157ms 1s134ms 09 2 2s261ms 1s130ms 10 10 11s318ms 1s131ms 11 7 8s64ms 1s152ms 12 5 6s81ms 1s216ms 13 2 2s411ms 1s205ms 14 17 19s26ms 1s119ms 15 8 9s242ms 1s155ms 16 4 4s602ms 1s150ms 17 2 2s267ms 1s133ms 18 2 2s309ms 1s154ms 19 8 8s603ms 1s75ms 20 2 2s158ms 1s79ms 21 11 11s792ms 1s72ms 22 2 2s353ms 1s176ms 23 8 9s94ms 1s136ms [ User: pubeu - Total duration: 5m9s - Times executed: 279 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1606959' or receptorTerm.id = '1606959' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-04 12:30:40 Duration: 1s323ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1933265' or receptorTerm.id = '1933265' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-04 12:11:16 Duration: 1s296ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1789452' or receptorTerm.id = '1789452' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-01 22:00:37 Duration: 1s285ms Database: ctdprd51 User: pubeu Bind query: yes
2 482 9m42s 1s89ms 1s697ms 1s207ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jan 01 00 4 4s733ms 1s183ms 01 3 3s527ms 1s175ms 02 6 7s54ms 1s175ms 03 1 1s204ms 1s204ms 04 3 3s741ms 1s247ms 05 6 7s592ms 1s265ms 06 6 7s51ms 1s175ms 07 3 3s551ms 1s183ms 08 1 1s144ms 1s144ms 09 2 2s295ms 1s147ms 10 5 5s889ms 1s177ms 11 4 4s614ms 1s153ms 12 1 1s142ms 1s142ms 14 3 3s605ms 1s201ms 15 6 6s850ms 1s141ms 16 10 11s611ms 1s161ms 17 5 5s918ms 1s183ms 18 3 3s401ms 1s133ms 19 5 5s889ms 1s177ms 20 4 4s609ms 1s152ms 21 6 7s15ms 1s169ms 22 3 3s641ms 1s213ms 23 3 3s561ms 1s187ms Jan 02 00 7 8s378ms 1s196ms 01 4 4s835ms 1s208ms 02 4 4s804ms 1s201ms 03 9 10s673ms 1s185ms 04 3 3s545ms 1s181ms 05 8 9s593ms 1s199ms 06 4 4s641ms 1s160ms 07 3 3s543ms 1s181ms 08 4 4s609ms 1s152ms 09 6 6s970ms 1s161ms 10 2 2s305ms 1s152ms 11 3 3s649ms 1s216ms 12 7 8s617ms 1s231ms 13 4 5s69ms 1s267ms 14 6 7s543ms 1s257ms 15 6 7s343ms 1s223ms 16 4 4s970ms 1s242ms 17 3 3s754ms 1s251ms 18 3 3s665ms 1s221ms 19 5 6s102ms 1s220ms 20 6 7s266ms 1s211ms 21 7 8s739ms 1s248ms 22 7 8s364ms 1s194ms 23 5 6s36ms 1s207ms Jan 03 00 15 18s344ms 1s222ms 01 3 3s645ms 1s215ms 02 3 3s730ms 1s243ms 03 6 7s403ms 1s233ms 04 5 6s 1s200ms 05 11 13s734ms 1s248ms 06 10 11s989ms 1s198ms 07 10 12s195ms 1s219ms 08 10 12s254ms 1s225ms 09 6 7s283ms 1s213ms 10 5 6s275ms 1s255ms 11 1 1s205ms 1s205ms 12 5 6s35ms 1s207ms 13 13 15s978ms 1s229ms 14 2 2s435ms 1s217ms 15 1 1s225ms 1s225ms 16 5 6s71ms 1s214ms 17 1 1s226ms 1s226ms 18 7 8s384ms 1s197ms 19 11 12s966ms 1s178ms 20 4 4s687ms 1s171ms 21 4 4s764ms 1s191ms 22 4 4s921ms 1s230ms 23 11 13s442ms 1s222ms Jan 04 00 4 4s859ms 1s214ms 01 1 1s224ms 1s224ms 02 4 4s818ms 1s204ms 03 10 11s936ms 1s193ms 04 7 8s502ms 1s214ms 05 8 9s933ms 1s241ms 06 5 6s301ms 1s260ms 07 5 6s268ms 1s253ms 08 9 11s135ms 1s237ms 10 10 12s318ms 1s231ms 11 1 1s243ms 1s243ms 12 2 2s430ms 1s215ms 13 2 2s984ms 1s492ms 14 15 18s222ms 1s214ms 16 2 2s413ms 1s206ms 17 2 2s536ms 1s268ms 19 14 16s421ms 1s172ms 20 2 2s324ms 1s162ms 21 8 9s271ms 1s158ms 22 1 1s227ms 1s227ms 23 4 4s935ms 1s233ms [ User: pubeu - Total duration: 3m34s - Times executed: 177 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1217121') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1217121') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-04 13:11:41 Duration: 1s697ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1221432') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1221432') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-03 05:38:34 Duration: 1s362ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1221432') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1221432') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-03 05:43:38 Duration: 1s356ms Bind query: yes
3 260 16m40s 3s705ms 5s468ms 3s848ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jan 01 00 1 3s907ms 3s907ms 01 1 3s950ms 3s950ms 03 3 11s752ms 3s917ms 04 3 11s685ms 3s895ms 05 3 13s266ms 4s422ms 07 2 7s497ms 3s748ms 08 2 7s696ms 3s848ms 10 1 3s867ms 3s867ms 11 5 19s115ms 3s823ms 12 2 7s946ms 3s973ms 13 2 7s716ms 3s858ms 15 1 3s775ms 3s775ms 16 2 7s779ms 3s889ms 20 1 3s781ms 3s781ms 22 1 3s733ms 3s733ms Jan 02 01 31 1m58s 3s819ms 02 9 34s681ms 3s853ms 03 15 57s660ms 3s844ms 04 27 1m43s 3s841ms 05 3 11s749ms 3s916ms 06 1 3s789ms 3s789ms 08 5 19s177ms 3s835ms 09 1 3s869ms 3s869ms 10 2 8s152ms 4s76ms 12 2 7s832ms 3s916ms 13 2 8s136ms 4s68ms 14 2 7s595ms 3s797ms 15 2 7s571ms 3s785ms 16 1 3s812ms 3s812ms 17 2 7s599ms 3s799ms 19 2 7s620ms 3s810ms 20 20 1m15s 3s789ms 21 47 2m59s 3s812ms Jan 03 01 7 26s887ms 3s841ms 02 3 11s523ms 3s841ms 04 4 15s259ms 3s814ms 05 3 11s708ms 3s902ms 06 2 7s554ms 3s777ms 09 4 15s778ms 3s944ms 10 2 7s586ms 3s793ms 12 2 9s291ms 4s645ms 13 2 7s636ms 3s818ms 14 2 7s617ms 3s808ms 16 1 3s797ms 3s797ms 18 3 11s508ms 3s836ms 23 2 7s505ms 3s752ms Jan 04 00 1 3s851ms 3s851ms 02 1 3s977ms 3s977ms 03 1 3s801ms 3s801ms 04 2 7s636ms 3s818ms 05 5 19s206ms 3s841ms 06 2 7s762ms 3s881ms 07 2 7s615ms 3s807ms 10 1 3s831ms 3s831ms 11 1 3s950ms 3s950ms 13 1 3s816ms 3s816ms 16 1 3s927ms 3s927ms 22 1 3s711ms 3s711ms [ User: pubeu - Total duration: 6m22s - Times executed: 99 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343306') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343306') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-01-03 12:54:47 Duration: 5s468ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1408304') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1408304') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-01-01 05:37:09 Duration: 4s907ms Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1339574') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1339574') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-01-01 05:34:58 Duration: 4s485ms Database: ctdprd51 User: pubeu Bind query: yes
4 157 3m13s 1s100ms 1s799ms 1s231ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jan 01 00 2 2s359ms 1s179ms 01 1 1s148ms 1s148ms 02 2 2s291ms 1s145ms 03 1 1s265ms 1s265ms 04 2 2s374ms 1s187ms 05 4 5s17ms 1s254ms 07 1 1s237ms 1s237ms 12 2 2s297ms 1s148ms 13 1 1s185ms 1s185ms 14 1 1s263ms 1s263ms 15 1 1s106ms 1s106ms 18 1 1s157ms 1s157ms 19 2 2s246ms 1s123ms 20 3 3s459ms 1s153ms 21 5 5s795ms 1s159ms Jan 02 00 1 1s161ms 1s161ms 01 1 1s168ms 1s168ms 02 6 7s129ms 1s188ms 03 2 2s350ms 1s175ms 04 2 2s384ms 1s192ms 05 3 3s755ms 1s251ms 06 2 2s248ms 1s124ms 07 1 1s193ms 1s193ms 08 2 2s313ms 1s156ms 09 5 5s759ms 1s151ms 10 2 2s431ms 1s215ms 11 4 4s884ms 1s221ms 13 1 1s222ms 1s222ms 14 3 3s691ms 1s230ms 15 2 2s536ms 1s268ms 16 3 3s804ms 1s268ms 17 2 2s393ms 1s196ms 18 4 4s925ms 1s231ms 19 1 1s242ms 1s242ms 20 1 1s269ms 1s269ms 21 2 2s370ms 1s185ms 22 1 1s465ms 1s465ms 23 1 1s245ms 1s245ms Jan 03 00 3 4s188ms 1s396ms 01 3 3s712ms 1s237ms 02 2 2s320ms 1s160ms 04 4 4s937ms 1s234ms 05 6 7s658ms 1s276ms 06 1 1s298ms 1s298ms 07 3 3s643ms 1s214ms 08 2 2s472ms 1s236ms 09 5 6s81ms 1s216ms 11 3 3s928ms 1s309ms 12 1 1s306ms 1s306ms 13 2 2s373ms 1s186ms 15 1 1s167ms 1s167ms 16 1 1s226ms 1s226ms 19 2 2s280ms 1s140ms 21 2 2s326ms 1s163ms 22 2 2s683ms 1s341ms 23 1 1s244ms 1s244ms Jan 04 02 1 1s250ms 1s250ms 03 3 3s699ms 1s233ms 04 2 2s582ms 1s291ms 05 3 3s999ms 1s333ms 06 1 1s282ms 1s282ms 08 2 2s516ms 1s258ms 09 1 1s290ms 1s290ms 11 1 1s180ms 1s180ms 12 1 1s262ms 1s262ms 13 1 1s259ms 1s259ms 14 4 5s696ms 1s424ms 15 3 3s708ms 1s236ms 19 4 4s853ms 1s213ms 21 1 1s157ms 1s157ms 22 2 2s815ms 1s407ms 23 2 2s763ms 1s381ms [ User: pubeu - Total duration: 1m8s - Times executed: 56 ]
[ User: qaeu - Total duration: 4s6ms - Times executed: 3 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2085788') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2085788') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-03 00:13:32 Duration: 1s799ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2091319') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2091319') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-04 14:11:11 Duration: 1s530ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2086910') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2086910') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-01-04 14:08:07 Duration: 1s502ms Database: ctdprd51 User: pubeu Bind query: yes
5 138 6m16s 1s52ms 6s413ms 2s726ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where associatedterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jan 01 03 10 24s917ms 2s491ms 05 1 1s52ms 1s52ms 20 10 25s121ms 2s512ms Jan 02 14 1 6s413ms 6s413ms 17 10 24s811ms 2s481ms Jan 03 06 1 1s839ms 1s839ms 07 2 3s760ms 1s880ms 08 3 9s702ms 3s234ms 09 2 3s599ms 1s799ms 10 1 1s750ms 1s750ms 11 3 7s551ms 2s517ms 12 7 29s949ms 4s278ms 13 1 1s734ms 1s734ms 14 18 48s573ms 2s698ms 15 4 15s993ms 3s998ms 16 1 1s930ms 1s930ms 17 1 1s794ms 1s794ms 18 2 8s994ms 4s497ms 19 2 4s88ms 2s44ms 20 3 5s500ms 1s833ms 21 2 8s761ms 4s380ms 22 5 14s639ms 2s927ms 23 3 8s314ms 2s771ms Jan 04 00 4 7s935ms 1s983ms 01 6 16s726ms 2s787ms 03 1 1s847ms 1s847ms 04 2 4s923ms 2s461ms 05 3 9s35ms 3s11ms 06 3 8s546ms 2s848ms 07 6 17s580ms 2s930ms 09 2 4s227ms 2s113ms 10 2 7s434ms 3s717ms 11 2 3s829ms 1s914ms 12 2 4s802ms 2s401ms 13 10 25s278ms 2s527ms 15 1 1s323ms 1s323ms 20 1 2s31ms 2s31ms [ User: pubeu - Total duration: 2m10s - Times executed: 50 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-01-02 14:34:28 Duration: 6s413ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-01-04 13:48:11 Duration: 6s331ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-01-03 15:52:39 Duration: 6s256ms Database: ctdprd51 User: pubeu Bind query: yes
6 122 9m35s 1s5ms 5s590ms 4s718ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jan 01 02 2 9s375ms 4s687ms 03 6 26s615ms 4s435ms 05 1 4s676ms 4s676ms 06 2 9s14ms 4s507ms 09 4 19s551ms 4s887ms 11 1 4s796ms 4s796ms 12 2 9s163ms 4s581ms 19 1 4s524ms 4s524ms 20 4 19s499ms 4s874ms 21 1 4s947ms 4s947ms 22 7 34s271ms 4s895ms 23 2 9s532ms 4s766ms Jan 02 00 6 29s492ms 4s915ms 01 3 14s239ms 4s746ms 02 1 4s556ms 4s556ms 04 2 10s570ms 5s285ms 05 4 19s771ms 4s942ms 07 3 14s418ms 4s806ms 11 2 9s76ms 4s538ms 12 1 5s65ms 5s65ms 14 1 4s656ms 4s656ms 16 1 4s509ms 4s509ms 17 4 18s821ms 4s705ms 18 1 4s855ms 4s855ms 19 2 9s517ms 4s758ms 20 1 4s469ms 4s469ms 22 3 13s480ms 4s493ms Jan 03 00 1 4s404ms 4s404ms 01 2 8s988ms 4s494ms 04 1 4s934ms 4s934ms 05 3 14s48ms 4s682ms 06 1 4s569ms 4s569ms 07 1 4s925ms 4s925ms 08 2 9s402ms 4s701ms 09 2 6s58ms 3s29ms 12 2 9s726ms 4s863ms 13 1 5s104ms 5s104ms 14 5 24s180ms 4s836ms 15 3 14s671ms 4s890ms 16 1 4s662ms 4s662ms 22 2 9s773ms 4s886ms Jan 04 02 3 14s203ms 4s734ms 04 7 34s131ms 4s875ms 05 2 9s407ms 4s703ms 07 1 4s650ms 4s650ms 08 1 4s628ms 4s628ms 09 1 4s947ms 4s947ms 10 1 4s912ms 4s912ms 11 1 5s492ms 5s492ms 13 5 20s502ms 4s100ms 14 3 13s676ms 4s558ms 16 1 5s56ms 5s56ms 20 1 5s72ms 5s72ms [ User: pubeu - Total duration: 3m47s - Times executed: 48 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1265875' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-01-02 04:32:51 Duration: 5s590ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1312015' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-01-04 11:36:29 Duration: 5s492ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1299386' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-01-03 15:11:51 Duration: 5s319ms Bind query: yes
7 120 5m20s 1s116ms 4s740ms 2s673ms select e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, ( select string_agg(distinct stressorterm.nm || ? || ( select cd from object_type where id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?)) as stressoragents, ( select string_agg(distinct coalesce(receptorterm.nm, ?) || ? || coalesce(( select cd from object_type where id = receptorterm.object_type_id), ?) || ? || coalesce(receptorterm.nm_html, ?) || ? || coalesce(receptorterm.acc_txt, ?) || ? || coalesce(receptorterm.acc_db_cd, ?) || ? || receptor.description, ?)) as receptors, ( select string_agg(distinct country.nm, ?)) as studycountries, ( select string_agg(distinct location.locality_txt, ?)) as localities, ( select string_agg(distinct event.medium_nm || ? || coalesce(event.medium_term_acc_txt, ?), ?)) as assaymediums, ( select string_agg(distinct exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?)) as assayedmarkers, ( select string_agg(distinct diseaseterm.nm || ? || ( select cd from object_type where id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?)) as diseases, ( select string_agg(distinct phenotypeterm.nm || ? || ( select cd from object_type where id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?)) as phenotypes, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, re.author_summary summary, count(*) over () fullrowcount from exposure e inner join reference r on e.reference_id = r.id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join term receptorterm on receptor.term_id = receptorterm.id left outer join exp_event event on e.exp_event_id = event.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join exp_event_location location on e.exp_event_id = location.exp_event_id left outer join country on location.country_id = country.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id inner join reference_exp re on e.reference_id = re.reference_id left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id where e.reference_id = any (array ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like ?) and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressoragents limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jan 01 03 10 25s504ms 2s550ms 05 2 9s37ms 4s518ms 20 9 22s418ms 2s490ms Jan 02 14 3 7s948ms 2s649ms 17 9 21s876ms 2s430ms Jan 03 07 2 4s203ms 2s101ms 08 2 3s537ms 1s768ms 09 2 3s266ms 1s633ms 11 1 3s372ms 3s372ms 12 4 13s316ms 3s329ms 13 2 4s181ms 2s90ms 14 12 30s660ms 2s555ms 15 1 1s127ms 1s127ms 16 2 7s12ms 3s506ms 17 4 11s119ms 2s779ms 18 3 10s180ms 3s393ms 19 2 7s38ms 3s519ms 20 4 7s132ms 1s783ms 21 5 14s38ms 2s807ms 22 1 1s116ms 1s116ms 23 2 4s158ms 2s79ms Jan 04 00 2 5s492ms 2s746ms 01 3 9s170ms 3s56ms 03 3 13s651ms 4s550ms 04 3 12s273ms 4s91ms 05 5 9s280ms 1s856ms 06 1 2s213ms 2s213ms 07 3 5s543ms 1s847ms 08 1 1s183ms 1s183ms 09 2 6s190ms 3s95ms 10 3 11s280ms 3s760ms 11 1 2s447ms 2s447ms 13 10 25s514ms 2s551ms 14 1 4s339ms 4s339ms [ User: pubeu - Total duration: 2m15s - Times executed: 47 ]
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-01-02 14:34:35 Duration: 4s740ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-01-04 13:48:16 Duration: 4s676ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1398604') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-01-03 19:46:17 Duration: 4s672ms Bind query: yes
8 119 2m42s 1s286ms 1s693ms 1s363ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jan 01 00 2 2s739ms 1s369ms 01 3 4s131ms 1s377ms 02 1 1s332ms 1s332ms 05 4 5s808ms 1s452ms 06 3 4s55ms 1s351ms 08 1 1s303ms 1s303ms 12 1 1s286ms 1s286ms 13 3 4s185ms 1s395ms 14 1 1s304ms 1s304ms 18 1 1s294ms 1s294ms 19 1 1s360ms 1s360ms 20 2 2s764ms 1s382ms 21 2 2s796ms 1s398ms 23 3 4s21ms 1s340ms Jan 02 01 1 1s296ms 1s296ms 02 1 1s293ms 1s293ms 03 2 2s690ms 1s345ms 04 2 2s827ms 1s413ms 05 4 5s342ms 1s335ms 06 1 1s415ms 1s415ms 07 2 2s805ms 1s402ms 09 1 1s348ms 1s348ms 10 1 1s317ms 1s317ms 11 1 1s387ms 1s387ms 13 1 1s412ms 1s412ms 14 2 2s897ms 1s448ms 15 2 2s748ms 1s374ms 16 1 1s311ms 1s311ms 19 4 5s361ms 1s340ms 20 1 1s323ms 1s323ms 21 1 1s403ms 1s403ms 22 3 4s8ms 1s336ms 23 1 1s378ms 1s378ms Jan 03 00 2 2s805ms 1s402ms 02 2 2s682ms 1s341ms 03 1 1s335ms 1s335ms 04 3 3s958ms 1s319ms 05 4 5s313ms 1s328ms 06 5 6s766ms 1s353ms 07 2 2s626ms 1s313ms 08 1 1s303ms 1s303ms 09 3 4s88ms 1s362ms 10 1 1s433ms 1s433ms 11 1 1s400ms 1s400ms 12 1 1s394ms 1s394ms 17 1 1s289ms 1s289ms 18 2 2s754ms 1s377ms 19 1 1s345ms 1s345ms 20 2 2s726ms 1s363ms 23 1 1s367ms 1s367ms Jan 04 00 2 2s701ms 1s350ms 01 4 5s396ms 1s349ms 04 1 1s307ms 1s307ms 05 2 2s604ms 1s302ms 11 4 5s794ms 1s448ms 13 3 4s67ms 1s355ms 16 1 1s384ms 1s384ms 17 1 1s372ms 1s372ms 18 1 1s434ms 1s434ms 19 1 1s432ms 1s432ms 20 3 4s112ms 1s370ms 23 3 4s108ms 1s369ms [ User: pubeu - Total duration: 1m11s - Times executed: 52 ]
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'M' ORDER BY t.nm_sort LIMIT 100;
Date: 2025-01-01 05:35:23 Duration: 1s693ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2025-01-04 11:45:38 Duration: 1s508ms Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2025-01-02 14:34:33 Duration: 1s486ms Database: ctdprd51 User: pubeu Bind query: yes
9 112 7m34s 1s 27s42ms 4s53ms select ? "Input", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( select string_agg(stm.slim_term_nm, ? order by stm.slim_term_nm) from slim_term_mapping stm where stm.mapped_term_id = d.id) "DiseaseCategories", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(distinct r.acc_txt, ?) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id where (d.id = ?) group by g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by d.nm_sort, g.nm, "DirectEvidence", c.nm;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jan 02 06 112 7m34s 4s53ms [ User: pubeu - Total duration: 1m28s - Times executed: 18 ]
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'mesh:d011297' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2086743) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-01-02 06:19:09 Duration: 27s42ms Bind query: yes
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'mesh:d015431' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2087991) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-01-02 06:15:35 Duration: 20s221ms Bind query: yes
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'mesh:d009336' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2084416) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-01-02 06:12:51 Duration: 19s475ms Bind query: yes
10 59 11m27s 11s102ms 14s170ms 11s649ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and baseterm.id in ( select term_id from term_label tl where upper(tl.nm) = ? and tl.object_type_id = ?)) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jan 01 14 1 11s178ms 11s178ms 15 3 33s455ms 11s151ms 16 9 1m40s 11s184ms 20 2 22s385ms 11s192ms 21 9 1m45s 11s708ms 23 19 3m44s 11s794ms Jan 02 12 14 2m47s 11s940ms 13 2 23s8ms 11s504ms [ User: pubeu - Total duration: 6m20s - Times executed: 32 ]
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'ETHANOL' AND tl.object_type_id = 2)) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2025-01-01 23:29:51 Duration: 14s170ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'ETHANOL' AND tl.object_type_id = 2)) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2025-01-01 23:29:51 Duration: 13s454ms Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'ETHANOL' AND tl.object_type_id = 2)) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2025-01-02 12:35:11 Duration: 13s409ms Database: ctdprd51 User: pubeu Bind query: yes
11 56 2m36s 1s14ms 7s925ms 2s794ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jan 01 00 1 2s466ms 2s466ms 03 1 2s834ms 2s834ms 04 2 4s886ms 2s443ms 05 1 2s720ms 2s720ms 07 1 1s454ms 1s454ms 09 1 2s512ms 2s512ms 10 1 1s308ms 1s308ms 13 1 4s104ms 4s104ms 14 1 2s490ms 2s490ms 20 2 13s31ms 6s515ms Jan 02 05 2 2s302ms 1s151ms 06 1 2s771ms 2s771ms 09 1 7s925ms 7s925ms 20 1 4s585ms 4s585ms 23 1 2s429ms 2s429ms Jan 03 01 1 1s290ms 1s290ms 04 2 2s326ms 1s163ms 05 2 3s961ms 1s980ms 06 3 3s826ms 1s275ms 08 1 6s432ms 6s432ms 09 2 4s910ms 2s455ms 10 3 9s952ms 3s317ms 11 1 1s14ms 1s14ms 12 3 11s185ms 3s728ms 20 1 1s530ms 1s530ms Jan 04 00 1 2s401ms 2s401ms 01 2 3s763ms 1s881ms 04 2 3s508ms 1s754ms 05 2 3s328ms 1s664ms 07 2 5s628ms 2s814ms 08 2 8s615ms 4s307ms 09 2 3s29ms 1s514ms 11 2 3s180ms 1s590ms 12 3 15s395ms 5s131ms 17 1 3s358ms 3s358ms [ User: pubeu - Total duration: 1m19s - Times executed: 29 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2082807') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-01-02 09:42:11 Duration: 7s925ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2082807') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-01-03 12:49:40 Duration: 7s693ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2090537') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-01-04 12:14:16 Duration: 6s975ms Bind query: yes
12 52 4m25s 1s8ms 43s73ms 5s110ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jan 01 04 1 19s277ms 19s277ms 09 1 3s305ms 3s305ms 10 1 7s181ms 7s181ms 20 3 32s162ms 10s720ms 21 7 1m7s 9s623ms Jan 02 01 1 1s542ms 1s542ms 03 1 1s50ms 1s50ms 08 1 1s30ms 1s30ms 09 1 7s136ms 7s136ms 13 1 1s524ms 1s524ms Jan 03 01 1 1s49ms 1s49ms 06 6 17s281ms 2s880ms 10 1 1s382ms 1s382ms 11 16 36s144ms 2s259ms 14 1 1s559ms 1s559ms 15 1 14s461ms 14s461ms Jan 04 02 1 2s188ms 2s188ms 05 1 1s48ms 1s48ms 06 1 1s41ms 1s41ms 07 1 1s27ms 1s27ms 11 1 43s73ms 43s73ms 19 1 1s880ms 1s880ms 21 2 2s19ms 1s9ms [ User: pubeu - Total duration: 1m28s - Times executed: 24 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2083856') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-01-04 11:16:45 Duration: 43s73ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2084331') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-01-01 21:30:15 Duration: 30s179ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2084331') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-01-01 20:43:22 Duration: 30s2ms Bind query: yes
13 43 1m10s 1s229ms 1s899ms 1s631ms select c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposurereferencecount, case when cd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from chem_disease_axn a where a.chem_id = cd.chem_id and a.disease_id = cd.disease_id) else null end actiontypes from chem_disease cd inner join term c on cd.chem_id = c.id inner join term d on cd.disease_id = d.id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, cd.network_score desc nulls last, d.nm_sort, c.nm_sort limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jan 01 03 2 3s115ms 1s557ms 05 1 1s368ms 1s368ms 20 2 3s198ms 1s599ms Jan 02 14 1 1s889ms 1s889ms 17 2 3s96ms 1s548ms Jan 03 09 3 4s952ms 1s650ms 11 1 1s854ms 1s854ms 12 1 1s827ms 1s827ms 13 1 1s835ms 1s835ms 14 2 3s93ms 1s546ms 15 1 1s873ms 1s873ms 17 1 1s272ms 1s272ms 18 2 3s88ms 1s544ms 19 1 1s261ms 1s261ms 22 1 1s840ms 1s840ms 23 2 2s508ms 1s254ms Jan 04 01 1 1s825ms 1s825ms 02 1 1s823ms 1s823ms 03 1 1s822ms 1s822ms 04 2 3s108ms 1s554ms 05 3 4s940ms 1s646ms 06 1 1s850ms 1s850ms 07 1 1s229ms 1s229ms 08 2 3s95ms 1s547ms 09 1 1s847ms 1s847ms 10 2 3s736ms 1s868ms 11 2 3s680ms 1s840ms 13 2 3s124ms 1s562ms [ User: pubeu - Total duration: 24s255ms - Times executed: 14 ]
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-01-01 20:46:05 Duration: 1s899ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-01-02 14:34:20 Duration: 1s889ms Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-01-03 15:51:52 Duration: 1s873ms Database: ctdprd51 User: pubeu Bind query: yes
14 41 1m49s 1s 3s812ms 2s674ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jan 01 03 1 3s359ms 3s359ms 05 6 15s816ms 2s636ms 09 1 3s282ms 3s282ms 15 1 3s368ms 3s368ms 17 1 3s302ms 3s302ms 21 2 6s697ms 3s348ms Jan 02 05 3 7s759ms 2s586ms 14 1 3s398ms 3s398ms Jan 03 05 5 12s820ms 2s564ms 07 1 2s117ms 2s117ms 08 1 3s262ms 3s262ms 09 2 5s305ms 2s652ms 10 2 5s498ms 2s749ms 11 1 1s912ms 1s912ms 12 1 3s306ms 3s306ms 17 1 2s4ms 2s4ms 20 1 3s315ms 3s315ms 21 2 4s991ms 2s495ms Jan 04 01 1 2s827ms 2s827ms 02 1 2s523ms 2s523ms 05 4 8s744ms 2s186ms 10 1 1s928ms 1s928ms 12 1 2s93ms 2s93ms [ User: pubeu - Total duration: 52s101ms - Times executed: 18 ]
[ User: qaeu - Total duration: 14s - Times executed: 4 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '594258' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-01-03 05:40:13 Duration: 3s812ms Database: ctdprd51 User: qaeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '654815' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2025-01-01 05:34:57 Duration: 3s572ms Database: ctdprd51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '654815' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2025-01-03 09:11:18 Duration: 3s511ms Bind query: yes
15 40 22m26s 1s3ms 4m4s 33s667ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jan 02 12 14 2m4s 8s890ms 13 17 11m57s 42s229ms 14 9 8m24s 56s36ms [ User: load - Total duration: 42s340ms - Times executed: 7 ]
[ Application: pg_bulkload - Total duration: 42s340ms - Times executed: 7 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2025-01-02 13:00:52 Duration: 4m4s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.DUPE}');
Date: 2025-01-02 14:50:22 Duration: 1m52s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.DUPE}');
Date: 2025-01-02 14:53:00 Duration: 1m26s Bind query: yes
16 26 59s357ms 1s174ms 5s896ms 2s282ms select * from ( select g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, count(*) over () fullrowcount from term g where g.id in ( select gt.gene_id from dag_path dp inner join gene_taxon gt on dp.descendant_object_id = gt.taxon_id where dp.ancestor_object_id = ? union all select gcr.gene_id from dag_path dp inner join gene_chem_reference gcr on dp.descendant_object_id = gcr.taxon_id where dp.ancestor_object_id = ?) offset ?) mq order by mq.genesymbolsort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jan 01 01 2 3s464ms 1s732ms 03 2 4s260ms 2s130ms 05 4 6s833ms 1s708ms Jan 02 14 8 20s914ms 2s614ms Jan 03 01 1 1s232ms 1s232ms 09 1 2s112ms 2s112ms 10 1 2s605ms 2s605ms 12 2 6s879ms 3s439ms 13 1 2s635ms 2s635ms 15 1 2s46ms 2s46ms Jan 04 02 1 2s516ms 2s516ms 09 1 1s635ms 1s635ms 18 1 2s220ms 2s220ms [ User: pubeu - Total duration: 28s71ms - Times executed: 11 ]
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '654815' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '654815') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-01-02 14:35:50 Duration: 5s896ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '654815' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '654815') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-01-03 12:25:33 Duration: 5s637ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '665677' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '665677') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-01-01 03:50:32 Duration: 3s86ms Bind query: yes
17 25 36s142ms 1s417ms 1s513ms 1s445ms select coalesce(d.abbr_display, d.nm_display) nm # ?, d.description # ?, coalesce(d.abbr, d.nm) anchor # ?, get_homepage_url (d.id) url # ? from db d # ? where d.id in (# ? select l.db_id # ? from db_link l # ? where l.type_cd = ? # ? and l.object_type_id = ?) # ? order by ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jan 01 02 1 1s436ms 1s436ms 05 2 2s896ms 1s448ms Jan 02 02 1 1s434ms 1s434ms 05 2 2s948ms 1s474ms 10 3 4s270ms 1s423ms 19 1 1s424ms 1s424ms 20 1 1s428ms 1s428ms Jan 03 05 2 2s929ms 1s464ms 10 1 1s428ms 1s428ms 12 1 1s446ms 1s446ms 21 1 1s439ms 1s439ms 23 2 2s886ms 1s443ms Jan 04 04 2 2s902ms 1s451ms 05 2 2s889ms 1s444ms 23 3 4s380ms 1s460ms [ User: pubeu - Total duration: 4s383ms - Times executed: 3 ]
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-01-02 05:43:31 Duration: 1s513ms Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-01-03 05:43:31 Duration: 1s480ms Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-01-04 23:02:58 Duration: 1s475ms Database: ctdprd51 User: pubeu Bind query: yes
18 24 2m8s 1s92ms 27s137ms 5s338ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jan 01 01 1 12s933ms 12s933ms 03 2 40s190ms 20s95ms 04 1 1s652ms 1s652ms 07 2 14s225ms 7s112ms 20 1 1s639ms 1s639ms 21 1 27s137ms 27s137ms 23 1 1s638ms 1s638ms Jan 02 03 1 2s469ms 2s469ms 05 1 2s459ms 2s459ms 11 1 2s251ms 2s251ms Jan 03 00 1 2s544ms 2s544ms 01 2 4s209ms 2s104ms Jan 04 00 1 1s586ms 1s586ms 06 1 1s522ms 1s522ms 08 1 1s92ms 1s92ms 09 5 8s81ms 1s616ms 10 1 2s492ms 2s492ms [ User: pubeu - Total duration: 1m16s - Times executed: 8 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2084331') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 4367750;
Date: 2025-01-01 21:30:15 Duration: 27s137ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2084331') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 4367750;
Date: 2025-01-01 03:34:23 Duration: 27s120ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2079347') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 1813850;
Date: 2025-01-01 07:17:14 Duration: 13s124ms Database: ctdprd51 User: pubeu Bind query: yes
19 21 2m30s 1s98ms 21s714ms 7s172ms select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jan 01 05 2 43s346ms 21s673ms 06 1 1s144ms 1s144ms Jan 02 06 1 2s241ms 2s241ms 08 1 1s300ms 1s300ms Jan 03 02 1 4s141ms 4s141ms 04 1 1s315ms 1s315ms 06 1 1s776ms 1s776ms 07 1 7s120ms 7s120ms 09 3 22s963ms 7s654ms 15 1 4s185ms 4s185ms 18 1 4s212ms 4s212ms Jan 04 00 3 23s85ms 7s695ms 02 1 21s310ms 21s310ms 04 1 10s59ms 10s59ms 11 1 1s329ms 1s329ms 18 1 1s98ms 1s98ms [ User: pubeu - Total duration: 52s49ms - Times executed: 8 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1221429') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-01-01 05:35:15 Duration: 21s714ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1221429') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-01-01 05:35:21 Duration: 21s632ms Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1221429') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-01-04 02:38:45 Duration: 21s310ms Bind query: yes
20 19 26s991ms 1s185ms 1s921ms 1s420ms select fg.nm fromgenesymbol, fg.acc_txt fromgeneacc, tg.nm togenesymbol, tg.acc_txt togeneacc, ft.nm fromtaxonnm, ft.secondary_nm fromtaxoncommonnm, ft.acc_txt fromtaxonacc, tt.nm totaxonnm, tt.secondary_nm totaxoncommonnm, tt.acc_txt totaxonacc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( select string_agg(ggt.throughput_txt, ? order by ggt.throughput_txt) from gene_gene_ref_throughput ggt where ggt.gene_gene_reference_id = ggr.id) throughput, count(*) over () fullrowcount from gene_gene_reference ggr inner join term fg on ggr.from_gene_id = fg.id inner join term tg on ggr.to_gene_id = tg.id inner join term ft on ggr.from_taxon_id = ft.id inner join term tt on ggr.to_taxon_id = tt.id where ggr.reference_id = ? order by fg.nm_sort, tg.nm_sort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jan 01 05 4 6s256ms 1s564ms Jan 02 05 4 5s947ms 1s486ms 06 1 1s192ms 1s192ms Jan 03 05 4 5s388ms 1s347ms 13 1 1s215ms 1s215ms Jan 04 05 4 5s804ms 1s451ms 08 1 1s185ms 1s185ms [ User: pubeu - Total duration: 2s796ms - Times executed: 2 ]
[ User: qaeu - Total duration: 2s745ms - Times executed: 2 ]
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2025-01-01 05:38:16 Duration: 1s921ms Bind query: yes
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2025-01-02 05:38:04 Duration: 1s658ms Bind query: yes
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2025-01-01 05:38:14 Duration: 1s526ms Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 3h3m 3h3m 3h3m 1 3h3m select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?)))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jan 04 14 1 3h3m 3h3m [ User: pubeu - Total duration: 3h3m - Times executed: 1 ]
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'gene'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'NEUROTOXICITY SYNDROMES' AND t.object_type_id = 3)))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-01-04 14:27:17 Duration: 3h3m Database: ctdprd51 User: pubeu Bind query: yes
2 2h14m32s 2h14m32s 2h14m32s 1 2h14m32s select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ? or tp.nm = ? or tp.nm = ?))) and gcr.gene_id = any (array ( select gd.gene_id from term d inner join gene_disease gd on d.id = gd.disease_id where d.nm_fts @@ to_tsquery(?, ?)))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jan 01 05 1 2h14m32s 2h14m32s -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' OR tp.nm = 'gene' OR tp.nm = 'mRNA'))) AND gcr.gene_id = ANY (ARRAY ( SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops', 'COGNITIVE & IMPAIRMENT | ALZHEIMER & S & DISEASE')))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-01-01 05:07:09 Duration: 2h14m32s Bind query: yes
3 33m43s 33m43s 33m43s 1 33m43s select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jan 04 12 1 33m43s 33m43s -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'gene'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'NEUROTOXICITY SYNDROMES' AND t.object_type_id = 3))) AND gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '10116' AND n.dag_id = 7))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2025-01-04 12:00:16 Duration: 33m43s Bind query: yes
4 23m55s 23m55s 23m55s 1 23m55s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jan 04 19 1 23m55s 23m55s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2025-01-04 19:00:55 Duration: 23m55s
5 22m7s 22m20s 22m14s 4 1h28m59s select maint_query_logs_archive ();Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jan 01 00 1 22m20s 22m20s Jan 02 00 1 22m7s 22m7s Jan 03 00 1 22m10s 22m10s Jan 04 00 1 22m20s 22m20s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-01-04 00:22:22 Duration: 22m20s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-01-01 00:22:22 Duration: 22m20s
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-01-03 00:22:11 Duration: 22m10s
6 6m55s 6m55s 6m55s 1 6m55s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jan 04 19 1 6m55s 6m55s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2025-01-04 19:12:51 Duration: 6m55s
7 1s434ms 17m37s 5m47s 10 57m51s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jan 01 01 1 1s434ms 1s434ms 05 2 35m14s 17m37s 14 1 4m51s 4m51s Jan 02 23 1 1s538ms 1s538ms Jan 03 02 1 3s219ms 3s219ms 17 1 1s471ms 1s471ms 19 1 1s908ms 1s908ms Jan 04 00 1 17m34s 17m34s 03 1 1s516ms 1s516ms [ User: pubeu - Total duration: 40m7s - Times executed: 6 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1245241') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-01-01 05:52:36 Duration: 17m37s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1245241') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-01-01 05:52:30 Duration: 17m36s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1245241') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-01-04 00:20:13 Duration: 17m34s Database: ctdprd51 User: pubeu Bind query: yes
8 44s455ms 44s778ms 44s632ms 13 9m40s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jan 01 06 1 44s703ms 44s703ms 10 1 44s718ms 44s718ms 14 1 44s455ms 44s455ms 18 1 44s646ms 44s646ms Jan 02 06 1 44s502ms 44s502ms 10 1 44s554ms 44s554ms 14 1 44s609ms 44s609ms 18 1 44s737ms 44s737ms Jan 03 06 1 44s628ms 44s628ms 10 1 44s778ms 44s778ms 14 1 44s661ms 44s661ms 18 1 44s694ms 44s694ms Jan 04 19 1 44s537ms 44s537ms [ User: postgres - Total duration: 8m55s - Times executed: 12 ]
[ Application: pg_dump - Total duration: 8m55s - Times executed: 12 ]
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-01-03 10:05:46 Duration: 44s778ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-01-02 18:05:46 Duration: 44s737ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-01-01 10:05:46 Duration: 44s718ms Database: ctdprd51 User: postgres Application: pg_dump
9 1s3ms 4m4s 33s667ms 40 22m26s select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jan 02 12 14 2m4s 8s890ms 13 17 11m57s 42s229ms 14 9 8m24s 56s36ms [ User: load - Total duration: 42s340ms - Times executed: 7 ]
[ Application: pg_bulkload - Total duration: 42s340ms - Times executed: 7 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2025-01-02 13:00:52 Duration: 4m4s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/misc/uniprot/output/dbLink.txt.DUPE}');
Date: 2025-01-02 14:50:22 Duration: 1m52s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/misc/bioGrid/output/dbLink.txt.DUPE}');
Date: 2025-01-02 14:53:00 Duration: 1m26s Bind query: yes
10 12s722ms 15s22ms 14s760ms 13 3m11s copy edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jan 01 06 1 14s896ms 14s896ms 10 1 14s832ms 14s832ms 14 1 15s22ms 15s22ms 18 1 14s911ms 14s911ms Jan 02 06 1 14s863ms 14s863ms 10 1 14s914ms 14s914ms 14 1 12s722ms 12s722ms 18 1 14s965ms 14s965ms Jan 03 06 1 15s6ms 15s6ms 10 1 14s955ms 14s955ms 14 1 14s993ms 14s993ms 18 1 14s947ms 14s947ms Jan 04 18 1 14s853ms 14s853ms [ User: postgres - Total duration: 3m11s - Times executed: 13 ]
[ Application: pg_dump - Total duration: 3m11s - Times executed: 13 ]
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2025-01-01 14:00:16 Duration: 15s22ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2025-01-03 06:00:17 Duration: 15s6ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2025-01-03 14:00:17 Duration: 14s993ms Database: ctdprd51 User: postgres Application: pg_dump
11 11s102ms 14s170ms 11s649ms 59 11m27s select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and baseterm.id in ( select term_id from term_label tl where upper(tl.nm) = ? and tl.object_type_id = ?)) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jan 01 14 1 11s178ms 11s178ms 15 3 33s455ms 11s151ms 16 9 1m40s 11s184ms 20 2 22s385ms 11s192ms 21 9 1m45s 11s708ms 23 19 3m44s 11s794ms Jan 02 12 14 2m47s 11s940ms 13 2 23s8ms 11s504ms [ User: pubeu - Total duration: 6m20s - Times executed: 32 ]
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'ETHANOL' AND tl.object_type_id = 2)) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2025-01-01 23:29:51 Duration: 14s170ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'ETHANOL' AND tl.object_type_id = 2)) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2025-01-01 23:29:51 Duration: 13s454ms Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'ETHANOL' AND tl.object_type_id = 2)) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm;
Date: 2025-01-02 12:35:11 Duration: 13s409ms Database: ctdprd51 User: pubeu Bind query: yes
12 1s98ms 21s714ms 7s172ms 21 2m30s select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jan 01 05 2 43s346ms 21s673ms 06 1 1s144ms 1s144ms Jan 02 06 1 2s241ms 2s241ms 08 1 1s300ms 1s300ms Jan 03 02 1 4s141ms 4s141ms 04 1 1s315ms 1s315ms 06 1 1s776ms 1s776ms 07 1 7s120ms 7s120ms 09 3 22s963ms 7s654ms 15 1 4s185ms 4s185ms 18 1 4s212ms 4s212ms Jan 04 00 3 23s85ms 7s695ms 02 1 21s310ms 21s310ms 04 1 10s59ms 10s59ms 11 1 1s329ms 1s329ms 18 1 1s98ms 1s98ms [ User: pubeu - Total duration: 52s49ms - Times executed: 8 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1221429') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-01-01 05:35:15 Duration: 21s714ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1221429') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-01-01 05:35:21 Duration: 21s632ms Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1221429') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-01-04 02:38:45 Duration: 21s310ms Bind query: yes
13 1s92ms 27s137ms 5s338ms 24 2m8s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jan 01 01 1 12s933ms 12s933ms 03 2 40s190ms 20s95ms 04 1 1s652ms 1s652ms 07 2 14s225ms 7s112ms 20 1 1s639ms 1s639ms 21 1 27s137ms 27s137ms 23 1 1s638ms 1s638ms Jan 02 03 1 2s469ms 2s469ms 05 1 2s459ms 2s459ms 11 1 2s251ms 2s251ms Jan 03 00 1 2s544ms 2s544ms 01 2 4s209ms 2s104ms Jan 04 00 1 1s586ms 1s586ms 06 1 1s522ms 1s522ms 08 1 1s92ms 1s92ms 09 5 8s81ms 1s616ms 10 1 2s492ms 2s492ms [ User: pubeu - Total duration: 1m16s - Times executed: 8 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2084331') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 4367750;
Date: 2025-01-01 21:30:15 Duration: 27s137ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2084331') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 4367750;
Date: 2025-01-01 03:34:23 Duration: 27s120ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2079347') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 1813850;
Date: 2025-01-01 07:17:14 Duration: 13s124ms Database: ctdprd51 User: pubeu Bind query: yes
14 1s8ms 43s73ms 5s110ms 52 4m25s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jan 01 04 1 19s277ms 19s277ms 09 1 3s305ms 3s305ms 10 1 7s181ms 7s181ms 20 3 32s162ms 10s720ms 21 7 1m7s 9s623ms Jan 02 01 1 1s542ms 1s542ms 03 1 1s50ms 1s50ms 08 1 1s30ms 1s30ms 09 1 7s136ms 7s136ms 13 1 1s524ms 1s524ms Jan 03 01 1 1s49ms 1s49ms 06 6 17s281ms 2s880ms 10 1 1s382ms 1s382ms 11 16 36s144ms 2s259ms 14 1 1s559ms 1s559ms 15 1 14s461ms 14s461ms Jan 04 02 1 2s188ms 2s188ms 05 1 1s48ms 1s48ms 06 1 1s41ms 1s41ms 07 1 1s27ms 1s27ms 11 1 43s73ms 43s73ms 19 1 1s880ms 1s880ms 21 2 2s19ms 1s9ms [ User: pubeu - Total duration: 1m28s - Times executed: 24 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2083856') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-01-04 11:16:45 Duration: 43s73ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2084331') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-01-01 21:30:15 Duration: 30s179ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2084331') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-01-01 20:43:22 Duration: 30s2ms Bind query: yes
15 1s5ms 5s590ms 4s718ms 122 9m35s select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jan 01 02 2 9s375ms 4s687ms 03 6 26s615ms 4s435ms 05 1 4s676ms 4s676ms 06 2 9s14ms 4s507ms 09 4 19s551ms 4s887ms 11 1 4s796ms 4s796ms 12 2 9s163ms 4s581ms 19 1 4s524ms 4s524ms 20 4 19s499ms 4s874ms 21 1 4s947ms 4s947ms 22 7 34s271ms 4s895ms 23 2 9s532ms 4s766ms Jan 02 00 6 29s492ms 4s915ms 01 3 14s239ms 4s746ms 02 1 4s556ms 4s556ms 04 2 10s570ms 5s285ms 05 4 19s771ms 4s942ms 07 3 14s418ms 4s806ms 11 2 9s76ms 4s538ms 12 1 5s65ms 5s65ms 14 1 4s656ms 4s656ms 16 1 4s509ms 4s509ms 17 4 18s821ms 4s705ms 18 1 4s855ms 4s855ms 19 2 9s517ms 4s758ms 20 1 4s469ms 4s469ms 22 3 13s480ms 4s493ms Jan 03 00 1 4s404ms 4s404ms 01 2 8s988ms 4s494ms 04 1 4s934ms 4s934ms 05 3 14s48ms 4s682ms 06 1 4s569ms 4s569ms 07 1 4s925ms 4s925ms 08 2 9s402ms 4s701ms 09 2 6s58ms 3s29ms 12 2 9s726ms 4s863ms 13 1 5s104ms 5s104ms 14 5 24s180ms 4s836ms 15 3 14s671ms 4s890ms 16 1 4s662ms 4s662ms 22 2 9s773ms 4s886ms Jan 04 02 3 14s203ms 4s734ms 04 7 34s131ms 4s875ms 05 2 9s407ms 4s703ms 07 1 4s650ms 4s650ms 08 1 4s628ms 4s628ms 09 1 4s947ms 4s947ms 10 1 4s912ms 4s912ms 11 1 5s492ms 5s492ms 13 5 20s502ms 4s100ms 14 3 13s676ms 4s558ms 16 1 5s56ms 5s56ms 20 1 5s72ms 5s72ms [ User: pubeu - Total duration: 3m47s - Times executed: 48 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1265875' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-01-02 04:32:51 Duration: 5s590ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1312015' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-01-04 11:36:29 Duration: 5s492ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1299386' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-01-03 15:11:51 Duration: 5s319ms Bind query: yes
16 1s 27s42ms 4s53ms 112 7m34s select ? "Input", d.nm "DiseaseName", d.acc_db_cd || ? || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( select string_agg(stm.slim_term_nm, ? order by stm.slim_term_nm) from slim_term_mapping stm where stm.mapped_term_id = d.id) "DiseaseCategories", case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", string_agg(gdr.source_acc_txt, ? order by gdr.source_acc_txt) "OmimIDs", string_agg(distinct r.acc_txt, ?) "PubMedIDs" from gene_disease_reference gdr inner join term g on gdr.gene_id = g.id inner join term d on gdr.disease_id = d.id left outer join reference r on gdr.reference_id = r.id left outer join term c on gdr.via_chem_id = c.id where (d.id = ?) group by g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, case when gdr.via_chem_id is null then ( select string_agg(a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gdr.gene_id and a.disease_id = gdr.disease_id) else null end, c.nm, gdr.network_score order by d.nm_sort, g.nm, "DirectEvidence", c.nm;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jan 02 06 112 7m34s 4s53ms [ User: pubeu - Total duration: 1m28s - Times executed: 18 ]
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'mesh:d011297' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2086743) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-01-02 06:19:09 Duration: 27s42ms Bind query: yes
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'mesh:d015431' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2087991) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-01-02 06:15:35 Duration: 20s221ms Bind query: yes
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SELECT /* BatchDiseaseGeneAssnsDAO */ 'mesh:d009336' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2084416) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;
Date: 2025-01-02 06:12:51 Duration: 19s475ms Bind query: yes
17 3s705ms 5s468ms 3s848ms 260 16m40s select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jan 01 00 1 3s907ms 3s907ms 01 1 3s950ms 3s950ms 03 3 11s752ms 3s917ms 04 3 11s685ms 3s895ms 05 3 13s266ms 4s422ms 07 2 7s497ms 3s748ms 08 2 7s696ms 3s848ms 10 1 3s867ms 3s867ms 11 5 19s115ms 3s823ms 12 2 7s946ms 3s973ms 13 2 7s716ms 3s858ms 15 1 3s775ms 3s775ms 16 2 7s779ms 3s889ms 20 1 3s781ms 3s781ms 22 1 3s733ms 3s733ms Jan 02 01 31 1m58s 3s819ms 02 9 34s681ms 3s853ms 03 15 57s660ms 3s844ms 04 27 1m43s 3s841ms 05 3 11s749ms 3s916ms 06 1 3s789ms 3s789ms 08 5 19s177ms 3s835ms 09 1 3s869ms 3s869ms 10 2 8s152ms 4s76ms 12 2 7s832ms 3s916ms 13 2 8s136ms 4s68ms 14 2 7s595ms 3s797ms 15 2 7s571ms 3s785ms 16 1 3s812ms 3s812ms 17 2 7s599ms 3s799ms 19 2 7s620ms 3s810ms 20 20 1m15s 3s789ms 21 47 2m59s 3s812ms Jan 03 01 7 26s887ms 3s841ms 02 3 11s523ms 3s841ms 04 4 15s259ms 3s814ms 05 3 11s708ms 3s902ms 06 2 7s554ms 3s777ms 09 4 15s778ms 3s944ms 10 2 7s586ms 3s793ms 12 2 9s291ms 4s645ms 13 2 7s636ms 3s818ms 14 2 7s617ms 3s808ms 16 1 3s797ms 3s797ms 18 3 11s508ms 3s836ms 23 2 7s505ms 3s752ms Jan 04 00 1 3s851ms 3s851ms 02 1 3s977ms 3s977ms 03 1 3s801ms 3s801ms 04 2 7s636ms 3s818ms 05 5 19s206ms 3s841ms 06 2 7s762ms 3s881ms 07 2 7s615ms 3s807ms 10 1 3s831ms 3s831ms 11 1 3s950ms 3s950ms 13 1 3s816ms 3s816ms 16 1 3s927ms 3s927ms 22 1 3s711ms 3s711ms [ User: pubeu - Total duration: 6m22s - Times executed: 99 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343306') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1343306') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-01-03 12:54:47 Duration: 5s468ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1408304') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1408304') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-01-01 05:37:09 Duration: 4s907ms Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1339574') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1339574') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-01-01 05:34:58 Duration: 4s485ms Database: ctdprd51 User: pubeu Bind query: yes
18 1s14ms 7s925ms 2s794ms 56 2m36s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jan 01 00 1 2s466ms 2s466ms 03 1 2s834ms 2s834ms 04 2 4s886ms 2s443ms 05 1 2s720ms 2s720ms 07 1 1s454ms 1s454ms 09 1 2s512ms 2s512ms 10 1 1s308ms 1s308ms 13 1 4s104ms 4s104ms 14 1 2s490ms 2s490ms 20 2 13s31ms 6s515ms Jan 02 05 2 2s302ms 1s151ms 06 1 2s771ms 2s771ms 09 1 7s925ms 7s925ms 20 1 4s585ms 4s585ms 23 1 2s429ms 2s429ms Jan 03 01 1 1s290ms 1s290ms 04 2 2s326ms 1s163ms 05 2 3s961ms 1s980ms 06 3 3s826ms 1s275ms 08 1 6s432ms 6s432ms 09 2 4s910ms 2s455ms 10 3 9s952ms 3s317ms 11 1 1s14ms 1s14ms 12 3 11s185ms 3s728ms 20 1 1s530ms 1s530ms Jan 04 00 1 2s401ms 2s401ms 01 2 3s763ms 1s881ms 04 2 3s508ms 1s754ms 05 2 3s328ms 1s664ms 07 2 5s628ms 2s814ms 08 2 8s615ms 4s307ms 09 2 3s29ms 1s514ms 11 2 3s180ms 1s590ms 12 3 15s395ms 5s131ms 17 1 3s358ms 3s358ms [ User: pubeu - Total duration: 1m19s - Times executed: 29 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2082807') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-01-02 09:42:11 Duration: 7s925ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2082807') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-01-03 12:49:40 Duration: 7s693ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2090537') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-01-04 12:14:16 Duration: 6s975ms Bind query: yes
19 1s52ms 6s413ms 2s726ms 138 6m16s select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where associatedterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jan 01 03 10 24s917ms 2s491ms 05 1 1s52ms 1s52ms 20 10 25s121ms 2s512ms Jan 02 14 1 6s413ms 6s413ms 17 10 24s811ms 2s481ms Jan 03 06 1 1s839ms 1s839ms 07 2 3s760ms 1s880ms 08 3 9s702ms 3s234ms 09 2 3s599ms 1s799ms 10 1 1s750ms 1s750ms 11 3 7s551ms 2s517ms 12 7 29s949ms 4s278ms 13 1 1s734ms 1s734ms 14 18 48s573ms 2s698ms 15 4 15s993ms 3s998ms 16 1 1s930ms 1s930ms 17 1 1s794ms 1s794ms 18 2 8s994ms 4s497ms 19 2 4s88ms 2s44ms 20 3 5s500ms 1s833ms 21 2 8s761ms 4s380ms 22 5 14s639ms 2s927ms 23 3 8s314ms 2s771ms Jan 04 00 4 7s935ms 1s983ms 01 6 16s726ms 2s787ms 03 1 1s847ms 1s847ms 04 2 4s923ms 2s461ms 05 3 9s35ms 3s11ms 06 3 8s546ms 2s848ms 07 6 17s580ms 2s930ms 09 2 4s227ms 2s113ms 10 2 7s434ms 3s717ms 11 2 3s829ms 1s914ms 12 2 4s802ms 2s401ms 13 10 25s278ms 2s527ms 15 1 1s323ms 1s323ms 20 1 2s31ms 2s31ms [ User: pubeu - Total duration: 2m10s - Times executed: 50 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-01-02 14:34:28 Duration: 6s413ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-01-04 13:48:11 Duration: 6s331ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1398604'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-01-03 15:52:39 Duration: 6s256ms Database: ctdprd51 User: pubeu Bind query: yes
20 1s 3s812ms 2s674ms 41 1m49s with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jan 01 03 1 3s359ms 3s359ms 05 6 15s816ms 2s636ms 09 1 3s282ms 3s282ms 15 1 3s368ms 3s368ms 17 1 3s302ms 3s302ms 21 2 6s697ms 3s348ms Jan 02 05 3 7s759ms 2s586ms 14 1 3s398ms 3s398ms Jan 03 05 5 12s820ms 2s564ms 07 1 2s117ms 2s117ms 08 1 3s262ms 3s262ms 09 2 5s305ms 2s652ms 10 2 5s498ms 2s749ms 11 1 1s912ms 1s912ms 12 1 3s306ms 3s306ms 17 1 2s4ms 2s4ms 20 1 3s315ms 3s315ms 21 2 4s991ms 2s495ms Jan 04 01 1 2s827ms 2s827ms 02 1 2s523ms 2s523ms 05 4 8s744ms 2s186ms 10 1 1s928ms 1s928ms 12 1 2s93ms 2s93ms [ User: pubeu - Total duration: 52s101ms - Times executed: 18 ]
[ User: qaeu - Total duration: 14s - Times executed: 4 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '594258' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2025-01-03 05:40:13 Duration: 3s812ms Database: ctdprd51 User: qaeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '654815' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2025-01-01 05:34:57 Duration: 3s572ms Database: ctdprd51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '654815' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2025-01-03 09:11:18 Duration: 3s511ms Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 0ms 91 0ms 0ms 0ms ;Times Reported Time consuming bind #1
Day Hour Count Duration Avg duration Dec 31 07 2 0ms 0ms 16 1 0ms 0ms 17 3 0ms 0ms 19 1 0ms 0ms Jan 01 08 2 0ms 0ms 09 4 0ms 0ms Jan 02 06 4 0ms 0ms 07 8 0ms 0ms 08 6 0ms 0ms 09 2 0ms 0ms 10 6 0ms 0ms 11 4 0ms 0ms 12 4 0ms 0ms 14 2 0ms 0ms Jan 03 07 21 0ms 0ms 08 6 0ms 0ms 10 6 0ms 0ms 12 9 0ms 0ms [ User: pubeu - Total duration: 1m31s - Times executed: 49 ]
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;
Date: Duration: 0ms Database: postgres User: ctdprd51 Remote: pubeu parameters: $1 = '2037025', $2 = '2037025'
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Events
Log levels
Key values
- 102,522 Log entries
Events distribution
Key values
- 0 PANIC entries
- 7 FATAL entries
- 35 ERROR entries
- 0 WARNING entries
Most Frequent Errors/Events
Key values
- 17 Max number of times the same event was reported
- 42 Total events found
Rank Times reported Error 1 17 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #1
Day Hour Count Jan 02 18 2 19 6 Jan 03 17 2 18 5 19 1 Jan 04 21 1 2 7 FATAL: connection to client lost
Times Reported Most Frequent Error / Event #2
Day Hour Count Jan 01 05 5 Jan 04 00 1 14 1 3 7 LOG: could not send data to client: Broken pipe
Times Reported Most Frequent Error / Event #3
Day Hour Count Jan 01 05 5 Jan 04 00 1 14 1 4 4 ERROR: syntax error in ts"..."
Times Reported Most Frequent Error / Event #4
Day Hour Count Jan 01 14 1 15 1 Jan 02 00 1 08 1 - ERROR: syntax error in ts"SATELLITE & HEAD & K<T"
- ERROR: syntax error in ts"1 & SIMON, & DAN. & OPTIMAL & STATE & ESTIMATION & KALMAN, & H∞, & AND & NONLINEAR & APPROACHES & || & REFERENCES & J & . & 2006 & (501-520. | 501520.)"
- ERROR: syntax error in ts"下列物质能使干燥的蓝色石蕊试纸先变红后褪色的是 & ________。 & ①氯气 ②液氯 ③新制的氯水 ④氯气的酒精溶液 ⑤盐酸 ⑥盐酸酸化的漂白粉溶液"
Statement: SELECT /* GeneBasicQueryDAO */ sq.* ,COUNT(*) OVER() fullRowCount FROM ( SELECT /* label */ t.acc_txt acc ,'name:' || t.nm accQueryStr ,t.nm ,t.nm_html nmHtml ,t.secondary_nm secondaryNm ,l.nm matchedNm ,lt.nm_display matchedType ,CASE WHEN lt.nm_display='Symbol' THEN true ELSE false END isNameMatch ,CASE WHEN lt.nm_display='Name' THEN true ELSE false END isSecondaryNameMatch ,t.has_chems hasChems ,t.has_diseases hasDiseases ,t.has_exposures hasExposures ,CASE WHEN UPPER(l.nm) = $1 THEN 1 ELSE 2 END relevance ,t.nm_sort ,t.id ,t.has_phenotypes hasPhenotypes FROM term t INNER JOIN term_label l ON l.term_id = t.id INNER JOIN term_label_type lt ON l.term_label_type_id = lt.id WHERE l.object_type_id = 4 AND t.object_type_id = 4 AND l.id IN( SELECT FIRST_VALUE(i.id) OVER(PARTITION BY i.term_id ORDER BY it.priority_seq, i.nm) FROM term_label i INNER JOIN term_label_type it ON i.term_label_type_id = it.id WHERE i.object_type_id = 4 AND i.nm_fts @@ to_tsquery('common.english_nostops', $2) ) UNION ALL SELECT /* acc */ t.acc_txt acc ,'name:' || t.nm accQueryStr ,t.nm ,t.nm_html nmHtml ,t.secondary_nm secondaryNm ,l.acc_txt matchednm ,'Accession' matchedtype ,false isNameMatch ,false isSecondaryNameMatch ,t.has_chems hasChems ,t.has_diseases hasDiseases ,t.has_exposures hasExposures ,1 relevance ,t.nm_sort ,t.id ,t.has_phenotypes hasPhenotypes FROM db_link l INNER JOIN term t ON l.object_id = t.id WHERE l.type_cd = 'A' AND l.object_type_id = 4 AND (upper( l.acc_txt ) = $3 OR upper( l.acc_txt ) = $4 OR upper( l.acc_txt ) = $5 OR upper( l.acc_txt ) = $6 ) ORDER BY 13,14 ) sq LIMIT 50
Date: 2025-01-01 14:31:25 Database: ctdprd51 Application: User: pubeu Remote:
Statement: SELECT /* BasicCountsDAO gen */ ii.cd ,COUNT(ii.id) cnt FROM (SELECT ot.cd ,tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops',$1) UNION SELECT 'reference' ,r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english',$2) OR r.id IN (SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $3 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $4 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $5 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $6 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $7 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $8 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $9 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $10 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $11 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $12 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $13 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $14 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $15 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $16 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $17 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $18 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $19 ) ) UNION SELECT ot.cd ,l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper( l.acc_txt ) LIKE $20 OR upper( l.acc_txt ) LIKE $21 OR upper( l.acc_txt ) LIKE $22 OR upper( l.acc_txt ) LIKE $23 OR upper( l.acc_txt ) LIKE $24 OR upper( l.acc_txt ) LIKE $25 OR upper( l.acc_txt ) LIKE $26 OR upper( l.acc_txt ) LIKE $27 OR upper( l.acc_txt ) LIKE $28 OR upper( l.acc_txt ) LIKE $29 OR upper( l.acc_txt ) LIKE $30 OR upper( l.acc_txt ) LIKE $31 OR upper( l.acc_txt ) LIKE $32 OR upper( l.acc_txt ) LIKE $33 OR upper( l.acc_txt ) LIKE $34 OR upper( l.acc_txt ) LIKE $35 ) ) ii GROUP BY ii.cd
Date: 2025-01-01 15:40:43
Statement: SELECT /* BasicCountsDAO gen */ ii.cd ,COUNT(ii.id) cnt FROM (SELECT ot.cd ,tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops',$1) UNION SELECT 'reference' ,r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english',$2) OR r.id IN (SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $3 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $4 OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE $5 ) ) UNION SELECT ot.cd ,l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper( l.acc_txt ) LIKE $6 OR upper( l.acc_txt ) LIKE $7 OR upper( l.acc_txt ) LIKE $8 ) ) ii GROUP BY ii.cd
Date: 2025-01-02 00:03:56 Database: ctdprd51 Application: User: pubeu Remote:
5 3 ERROR: relation "..." does not exist
Times Reported Most Frequent Error / Event #5
Day Hour Count Jan 02 10 3 - ERROR: relation "tetramers" does not exist at character 22
- ERROR: relation "tetramer" does not exist at character 22
- ERROR: relation "pub1.tetramer" does not exist at character 22
Statement: select count(*) from tetramers
Date: 2025-01-02 10:12:22
Statement: select count(*) from tetramer
Date: 2025-01-02 10:12:27
Statement: select count(*) from pub1.tetramer
Date: 2025-01-02 10:13:01
6 2 ERROR: syntax error at or near "..."
Times Reported Most Frequent Error / Event #6
Day Hour Count Jan 02 10 1 13 1 - ERROR: syntax error at or near "select" at character 35
- ERROR: syntax error at or near "SELECT" at character 590
Statement: select count(*) from pub2.term select count(*) from tetramers
Date: 2025-01-02 10:12:17 Database: ctdprd51 Application: pgAdmin 4 - CONN:2248742 User: load Remote:
Statement: select reference_acc_txt ,taxon_acc_txt ,pubTerm.nm ,get_ixn_prose( ixn_id ) ,create_by ,create_tm ,ixn_id from edit.reference_ixn ri ,pub1.term pubTerm -- set to CURRENT PRODUCTION PUB!!!!! where taxon_acc_txt not in ( select acc_txt from load.term where object_type_id = ( select id from edit.object_type where cd = 'taxon' ) ) and pubTerm.acc_txt = ri.taxon_acc_txt and object_type_id = ( select id from edit.object_type where cd = 'taxon' ) and taxon_acc_txt is not null and taxon_acc_txt <> '' order by nm, reference_acc_txt ********************* SELECT referenceAccTxt AS PubMed ,objectType AS Type ,curatedAccTxt AS "Curated Accession" ,curatedTerm AS "Curated Term" ,termNm AS "Underlying Term" ,speciesNm AS Species ,seqID AS "Seq ID" ,curatorName AS Curator ,ixnProse AS Ixn FROM ( select distinct i.root_id ,edit.get_ixn_prose ( i.root_id ) as ixnProse ,o.cd AS objectType ,a.acc_txt as curatedAccTxt ,a.object_nm as curatedTerm ,a.seq_acc_txt AS seqID ,t.nm as termNm ,t.acc_txt as termAccTxt ,ri.reference_acc_txt as referenceAccTxt ,ri.create_by AS curatorName ,to_char ( ri.create_tm, 'mm-dd-yyyy' ) ,taxon.nm AS speciesNm from IXN_ACTOR a LEFT OUTER JOIN load.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN IXN i ON a.ixn_id = i.id INNER JOIN REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN load.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper ( a.object_nm ) <> upper ( t.nm ) OR t.nm is null) UNION select distinct i.root_id ,edit.get_ixn_prose ( i.root_id ) as ixnProse ,'anatomy' AS objectType ,a.anatomy_acc_txt as curatedAccTxt ,a.anatomy_nm as curatedTerm ,'' AS seqID ,t.nm as termNm ,t.acc_txt as termAccTxt ,ri.reference_acc_txt as referenceAccTxt ,ri.create_by AS curatorName ,to_char ( ri.create_tm, 'mm-dd-yyyy' ) ,taxon.nm AS speciesNm from REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN load.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN IXN i ON ri.ixn_id = i.id LEFT OUTER JOIN load.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper ( a.anatomy_nm ) <> upper ( t.nm ) OR t.nm is null) order by curatedTerm, curatedTerm ) as test
Date: 2025-01-02 13:22:20
7 1 ERROR: function get_ixn_prose(...) does not exist
Times Reported Most Frequent Error / Event #7
Day Hour Count Jan 02 13 1 - ERROR: function get_ixn_prose(integer) does not exist at character 66
Hint: No function matches the given name and argument types. You might need to add explicit type casts.
Statement: select reference_acc_txt ,taxon_acc_txt ,pubTerm.nm ,get_ixn_prose( ixn_id ) ,create_by ,create_tm from edit.reference_ixn ri ,pub1.term pubTerm -- set to CURRENT PRODUCTION PUB!!!!! where taxon_acc_txt not in ( select acc_txt from load.term where object_type_id = ( select id from edit.object_type where cd = 'taxon' ) ) and pubTerm.acc_txt = ri.taxon_acc_txt and object_type_id = ( select id from edit.object_type where cd = 'taxon' ) and taxon_acc_txt is not null and taxon_acc_txt <> ''Date: 2025-01-02 13:11:11
8 1 ERROR: invalid byte sequence for encoding
Times Reported Most Frequent Error / Event #8
Day Hour Count Jan 04 06 1 - ERROR: invalid byte sequence for encoding "UTF8": 0x00
Context: unnamed portal parameter $1
Statement: SELECT /* ObjectIdDAOImpl.LabelsAndAccs */ t.id ,t.nm ,t.nm_sort nmSort ,t.acc_txt acc ,t.acc_db_cd accDbCd FROM term t ,(SELECT li.term_id FROM term_label li WHERE UPPER(li.nm) = $1 AND li.object_type_id = 2 UNION SELECT l.object_id FROM db_link l WHERE upper( l.acc_txt ) = $2 AND l.object_type_id = 2 AND l.type_cd = 'A') ids WHERE t.id = ids.term_id ORDER BY CASE WHEN UPPER(t.nm) = $3 THEN 1 ELSE 2 END ,t.nm_sortDate: 2025-01-04 06:39:10 Database: ctdprd51 Application: User: pubeu Remote: