Times Reported Time consuming queries #1

x Hide

[ User: pubeu - Total duration: 13m13s - Times executed: 1 ]

x Hide

SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN db_link dbli ON dbli.object_id = pi.ancestor_object_id WHERE dbli.acc_txt = 'GO:0008150' AND dbli.type_cd = 'A' AND dbli.object_type_id = 5) INTERSECT ( SELECT /* IQH.getMasterPathwayWhereEquals.Acc */ tp.term_id FROM term_pathway tp WHERE tp.object_type_id = 4 AND UPPER(tp.pathway_acc_txt) = 'HSA04114' AND tp.pathway_acc_db_cd = 'KEGG'))) AND gcr.chem_id = ANY (ARRAY ( SELECT /* CIQH.getIxnChemWhereEquals.Name */ dp.descendant_object_id FROM dag_path dp INNER JOIN term t ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'N-(1,3-DIMETHYLBUTYL)-N''-PHENYL-P-PHENYLENEDIAMINE QUINONE' AND t.object_type_id = 2)) AND gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '10088' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;

Date: 2026-01-25 02:55:00
Duration: 13m13s
Database: ctdprd51
User: pubeu
Bind query: yes

x Hide

Times Reported Time consuming queries #2

x Hide

[ User: pubc - Total duration: 9m14s - Times executed: 1 ]

x Hide

[ Application: psql - Total duration: 9m14s - Times executed: 1 ]

x Hide

/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();

Date: 2026-01-25 00:09:16
Duration: 9m14s
Database: ctdprd51
User: pubc
Application: psql

x Hide

Times Reported Time consuming queries #3

x Hide

[ User: pubeu - Total duration: 1m24s - Times executed: 2 ]

[ User: qaeu - Total duration: 14s982ms - Times executed: 1 ]

x Hide

SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;

Date: 2026-01-25 15:07:58
Duration: 42s427ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;

Date: 2026-01-25 15:07:58
Duration: 42s405ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;

Date: 2026-01-25 15:07:58
Duration: 14s982ms
Database: ctdprd51
User: qaeu
Bind query: yes

x Hide

Times Reported Time consuming queries #4

x Hide

SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes;

Date: 2026-01-25 15:06:41
Duration: 37s559ms
Bind query: yes

x Hide

Times Reported Time consuming queries #5

x Hide

[ User: pubeu - Total duration: 20s630ms - Times executed: 4 ]

[ User: qaeu - Total duration: 10s301ms - Times executed: 2 ]

x Hide

SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1332236)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;

Date: 2026-01-25 15:12:18
Duration: 5s216ms
Bind query: yes

SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1332236)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;

Date: 2026-01-25 15:10:57
Duration: 5s205ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1332236)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;

Date: 2026-01-25 05:48:45
Duration: 5s170ms
Database: ctdprd51
User: pubeu
Bind query: yes

x Hide

Times Reported Time consuming queries #6

x Hide

[ User: pubeu - Total duration: 33s273ms - Times executed: 1 ]

x Hide

SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE 'APOPTOSIS' AND li.object_type_id = 5)) ORDER BY g.nm_sort, g.id LIMIT 50;

Date: 2026-01-25 15:06:41
Duration: 33s273ms
Database: ctdprd51
User: pubeu
Bind query: yes

x Hide

Times Reported Time consuming queries #7

x Hide

[ User: pubeu - Total duration: 25s422ms - Times executed: 2 ]

x Hide

SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3)) ORDER BY g.nm_sort, g.id LIMIT 50;

Date: 2026-01-25 15:06:54
Duration: 12s711ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3)) ORDER BY g.nm_sort, g.id LIMIT 50;

Date: 2026-01-25 15:06:54
Duration: 12s710ms
Database: ctdprd51
User: pubeu
Bind query: yes

x Hide

Times Reported Time consuming queries #8

x Hide

[ User: pubeu - Total duration: 16s138ms - Times executed: 3 ]

x Hide

SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1400728' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;

Date: 2026-01-25 21:09:16
Duration: 5s510ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1400728' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;

Date: 2026-01-25 21:09:12
Duration: 5s452ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1400728' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;

Date: 2026-01-25 21:09:17
Duration: 5s325ms
Bind query: yes

x Hide

Times Reported Time consuming queries #9

x Hide

[ User: qaeu - Total duration: 14s586ms - Times executed: 1 ]

x Hide