Times Reported Time consuming queries #1

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select pub1.maint_gene_chem_ref_gene_form_refresh ();

Date: 2026-01-29 02:27:27
Duration: 1h50m5s
Bind query: yes

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Times Reported Time consuming queries #2

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update pub1.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));

Date: 2026-01-29 00:31:44
Duration: 29m29s
Bind query: yes

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Times Reported Time consuming queries #3

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[ User: pubc - Total duration: 9m12s - Times executed: 1 ]

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[ Application: psql - Total duration: 9m12s - Times executed: 1 ]

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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();

Date: 2026-01-29 00:09:14
Duration: 9m12s
Database: ctdprd51
User: pubc
Application: psql

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Times Reported Time consuming queries #4

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INSERT INTO pub1.TERM_REFERENCE (term_id, object_type_id, reference_id, ixn_type_id) SELECT DISTINCT term_id, object_type_id, reference_id, ixn_type_id FROM ( SELECT gene_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = gene_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'CHEMICAL-GENE') as ixn_type_id FROM pub1.GENE_CHEM_REFERENCE UNION SELECT chem_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = chem_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'CHEMICAL-GENE') as ixn_type_id FROM pub1.GENE_CHEM_REFERENCE UNION SELECT taxon_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = taxon_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'CHEMICAL-GENE') as ixn_type_id FROM pub1.GENE_CHEM_REFERENCE WHERE taxon_id IS NOT NULL UNION SELECT chem_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = chem_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'CHEMICAL-DISEASE') as ixn_type_id FROM pub1.CHEM_DISEASE_REFERENCE WHERE source_cd = 'C' UNION SELECT disease_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = disease_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'CHEMICAL-DISEASE') as ixn_type_id FROM pub1.CHEM_DISEASE_REFERENCE WHERE source_cd = 'C' UNION SELECT gene_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = gene_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'GENE-DISEASE') as ixn_type_id FROM pub1.GENE_DISEASE_REFERENCE WHERE source_cd = 'C' UNION SELECT disease_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = disease_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'GENE-DISEASE') as ixn_type_id FROM pub1.GENE_DISEASE_REFERENCE WHERE source_cd = 'C' UNION SELECT ee.exp_marker_term_id as term_id, ( SELECT object_type_id FROM term WHERE id = exp_marker_term_id), e.reference_id, ( SELECT id FROM edit.ixn_type WHERE nm = 'EXPOSURE') as ixn_type_id FROM pub1.EXPOSURE e, pub1.EXP_EVENT ee WHERE e.exp_event_id = ee.id AND exp_marker_term_id IS NOT NULL UNION SELECT er.term_id, ( SELECT object_type_id FROM term WHERE id = er.term_id), e.reference_id, ( SELECT id FROM edit.ixn_type WHERE nm = 'EXPOSURE') as ixn_type_id FROM pub1.EXPOSURE e, pub1.EXP_RECEPTOR er WHERE e.exp_receptor_id = er.id AND er.term_id IS NOT NULL UNION SELECT chem_id as term_id, ( SELECT object_type_id FROM term WHERE id = chem_id), e.reference_id, ( SELECT id FROM edit.ixn_type WHERE nm = 'EXPOSURE') as ixn_type_id FROM pub1.EXPOSURE e, pub1.EXP_STRESSOR es WHERE e.exp_stressor_id = es.id AND chem_id IS NOT NULL UNION SELECT phenotype_id as term_id, ( SELECT object_type_id FROM term WHERE id = phenotype_id), e.reference_id, ( SELECT id FROM edit.ixn_type WHERE nm = 'EXPOSURE') as ixn_type_id FROM pub1.EXPOSURE e, pub1.EXP_OUTCOME eo WHERE e.exp_outcome_id = eo.id AND phenotype_id IS NOT NULL UNION SELECT disease_id as term_id, ( SELECT object_type_id FROM term WHERE id = disease_id), e.reference_id, ( SELECT id FROM edit.ixn_type WHERE nm = 'EXPOSURE') as ixn_type_id FROM pub1.EXPOSURE e, pub1.EXP_OUTCOME eo WHERE e.exp_outcome_id = eo.id AND disease_id IS NOT NULL UNION SELECT phenotype_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = phenotype_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'PHENOTYPE') as ixn_type_id FROM pub1.PHENOTYPE_TERM_REFERENCE WHERE source_cd = 'C' UNION SELECT term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = term_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'PHENOTYPE') as ixn_type_id FROM pub1.PHENOTYPE_TERM_REFERENCE WHERE source_cd = 'C' UNION SELECT taxon_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = taxon_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'PHENOTYPE') as ixn_type_id FROM pub1.PHENOTYPE_TERM_REFERENCE WHERE source_cd = 'C' AND taxon_id IS NOT NULL UNION SELECT from_gene_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = from_gene_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'GENE-GENE') as ixn_type_id FROM pub1.GENE_GENE_REFERENCE UNION SELECT to_gene_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = to_gene_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'GENE-GENE') as ixn_type_id FROM pub1.GENE_GENE_REFERENCE UNION SELECT from_taxon_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = from_taxon_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'GENE-GENE') as ixn_type_id FROM pub1.GENE_GENE_REFERENCE UNION SELECT to_taxon_id as term_id, ( SELECT object_type_id FROM pub1.TERM WHERE id = to_taxon_id), reference_id, ( SELECT id FROM edit.IXN_TYPE WHERE nm = 'GENE-GENE') as ixn_type_id FROM pub1.GENE_GENE_REFERENCE UNION SELECT DISTINCT t.id as taxon_id, t.object_type_id as taxon_object_id, r.id as reference_id, i.ixn_type_id as ixn_type_id FROM edit.REFERENCE_IXN ri, pub1.TERM t, edit.IXN i, pub1.REFERENCE r WHERE ri.taxon_acc_txt = t.acc_txt AND t.object_type_id = ( SELECT id FROM pub1.OBJECT_TYPE WHERE cd = 'taxon') AND ri.ixn_id = i.root_id AND i.ixn_type_id in ( SELECT id FROM edit.IXN_TYPE WHERE nm in ('CHEMICAL-DISEASE', 'GENE-DISEASE')) AND ri.reference_acc_txt = r.acc_txt AND ri.taxon_acc_txt IS NOT NULL AND ri.taxon_acc_txt <> '') as test UNION select ea.anatomy_id as term_id, ( select id from object_type where cd = 'anatomy') as object_type_id, r.id as reference_id, ( select id from ixn_type where nm = 'EXPOSURE') as ixn_type_id from pub1.EXP_ANATOMY ea, pub1.EXP_OUTCOME eo, pub1.EXPOSURE e, pub1.REFERENCE r where ea.exp_outcome_id = eo.id and eo.id = e.exp_outcome_id and e.reference_acc_txt = r.acc_txt UNION select anatomy_id as term_id, ( select id from object_type where cd = 'anatomy') as object_type_id, r.id as reference_id, ( select id from ixn_type where nm = 'PHENOTYPE') as ixn_type_id from pub1.IXN i, pub1.IXN_ANATOMY ia, edit.REFERENCE_IXN ri, pub1.REFERENCE r where i.id = ri.ixn_id and ri.reference_acc_txt = r.acc_txt and i.id = ia.ixn_id UNION select medium_term_id as term_id, ( select id from object_type where cd = 'anatomy') as object_type_id, r.id, ( select id from ixn_type where nm = 'EXPOSURE') as ixn_type_id from pub1.EXP_EVENT ee, pub1.EXPOSURE e, pub1.REFERENCE r where ee.id = e.exp_event_id and e.reference_acc_txt = r.acc_txt and medium_term_id is not null;

Date: 2026-01-29 02:30:11
Duration: 2m43s
Bind query: yes

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Times Reported Time consuming queries #5

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update pub1.PHENOTYPE_TERM pt set exposure_reference_qty = ( select count(distinct reference_id) from pub1.PHENOTYPE_TERM_REFERENCE ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));

Date: 2026-01-29 00:34:17
Duration: 2m32s
Bind query: yes

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Times Reported Time consuming queries #6

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update pub1.CHEM_DISEASE cd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.CHEM_DISEASE_REFERENCE cdr where cd.chem_id = cdr.chem_id and cd.disease_id = cdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));

Date: 2026-01-29 00:02:15
Duration: 1m27s
Bind query: yes

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Times Reported Time consuming queries #7

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update pub1.DAG_NODE set has_exposures = false;

Date: 2026-01-29 00:00:36
Duration: 1m13s
Bind query: yes

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Times Reported Time consuming queries #8

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update pub1.IXN set ixn_xml = replace(ixn_xml, '''', '"');

Date: 2026-01-29 00:37:17
Duration: 1m6s
Bind query: yes

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Times Reported Time consuming queries #9

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[ User: pubeu - Total duration: 18s178ms - Times executed: 2 ]

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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2121825') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;

Date: 2026-01-29 03:01:20
Duration: 45s882ms
Bind query: yes

SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2125466') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;

Date: 2026-01-29 03:14:25
Duration: 9s491ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2125466') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;

Date: 2026-01-29 03:13:18
Duration: 8s686ms
Database: ctdprd51
User: pubeu
Bind query: yes

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Times Reported Time consuming queries #10

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INSERT INTO pub1.GENE_GENE_REFERENCE (id, from_gene_id, to_gene_id, reference_id, from_taxon_id, to_taxon_id, src_db_id, experimental_sys_nm, experimental_sys_type) select ggr. id, ggr.from_gene_id, ggr.to_gene_id, l.object_id, ggr.from_taxon_id, ggr.to_taxon_id, ggr.src_db_id, ggr.experimental_sys_nm, ggr.experimental_sys_type from load.GENE_GENE_REFERENCE ggr, edit.DB_LINK l where ggr.reference_acc_txt = l.acc_txt and l.object_type_id = 7 and l.db_id = 16;

Date: 2026-01-29 00:35:39
Duration: 1m2s
Bind query: yes

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Times Reported Time consuming queries #11

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[ User: pubeu - Total duration: 42s666ms - Times executed: 3 ]

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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2121825') ORDER BY d.nm_sort, g.nm_sort LIMIT 50;

Date: 2026-01-29 03:15:06
Duration: 16s137ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2121825') ORDER BY d.nm_sort, g.nm_sort LIMIT 50;

Date: 2026-01-29 02:51:38
Duration: 13s426ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2121825') ORDER BY d.nm_sort, g.nm_sort LIMIT 50;

Date: 2026-01-29 02:51:21
Duration: 13s101ms
Database: ctdprd51
User: pubeu
Bind query: yes

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Times Reported Time consuming queries #12

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[ User: pubeu - Total duration: 38s825ms - Times executed: 1 ]

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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;

Date: 2026-01-29 00:21:59
Duration: 38s825ms
Database: ctdprd51
User: pubeu
Bind query: yes

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Times Reported Time consuming queries #13

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[ User: pubeu - Total duration: 13s168ms - Times executed: 1 ]

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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2121825') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 50;

Date: 2026-01-29 02:53:32
Duration: 13s168ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2121825') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 100;

Date: 2026-01-29 02:55:59
Duration: 13s64ms
Bind query: yes

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Times Reported Time consuming queries #14

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[ User: pubeu - Total duration: 24s394ms - Times executed: 2 ]

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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'IBUPROFEN')) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases', 'decreases', 'affects')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;

Date: 2026-01-29 01:35:36
Duration: 15s569ms
Database: ctdprd51
User: pubeu
Bind query: yes

select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'IBUPROFEN')) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases', 'decreases', 'affects')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;

Date: 2026-01-29 01:36:01
Duration: 8s824ms
Database: ctdprd51
User: pubeu
Bind query: yes

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Times Reported Time consuming queries #15

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