Times Reported Time consuming queries #1

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[ User: pubc - Total duration: 9m14s - Times executed: 1 ]

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[ Application: psql - Total duration: 9m14s - Times executed: 1 ]

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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();

Date: 2026-04-01 00:09:16
Duration: 9m14s
Database: ctdprd51
User: pubc
Application: psql

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Times Reported Time consuming queries #2

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[ User: postgres - Total duration: 7m27s - Times executed: 4 ]

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[ Application: pg_dump - Total duration: 7m27s - Times executed: 4 ]

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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

Date: 2026-04-01 10:06:53
Duration: 1m52s
Database: ctdprd51
User: postgres
Application: pg_dump

COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

Date: 2026-04-01 06:06:53
Duration: 1m51s
Database: ctdprd51
User: postgres
Application: pg_dump

COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

Date: 2026-04-01 18:06:53
Duration: 1m51s
Database: ctdprd51
User: postgres
Application: pg_dump

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Times Reported Time consuming queries #3

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select distinct geneTerm.acc_txt # 015, geneTerm.nm # 015, 'gene' # 015, goTerm.acc_txt # 015, goTerm.nm # 015, 'phenotype' # 015, 'C' from pub1.GENE_GO_ANNOT gga # 015, pub1.TERM geneTerm # 015, pub1.TERM goTerm # 015 where gga.gene_id = geneTerm.id # 015 and gga.go_term_id = goTerm.id # 015;

Date: 2026-04-01 10:29:09
Duration: 1m34s
Bind query: yes

select distinct geneTerm.acc_txt # 015, geneTerm.nm # 015, 'gene' # 015, goTerm.acc_txt # 015, goTerm.nm # 015, 'phenotype' # 015, 'C' from pub1.GENE_GO_ANNOT gga # 015, pub1.TERM geneTerm # 015, pub1.TERM goTerm # 015 where gga.gene_id = geneTerm.id # 015 and gga.go_term_id = goTerm.id # 015;

Date: 2026-04-01 10:48:59
Duration: 1m32s
Bind query: yes

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Times Reported Time consuming queries #4

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[ User: load - Total duration: 2m36s - Times executed: 2 ]

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select distinct geneTerm.acc_txt, geneTerm.nm, 'gene', chemTerm.acc_txt, chemTerm.nm, 'chemical', 'C' from pub1.GENE_CHEM_REFERENCE gcr, pub1.TERM geneTerm, pub1.TERM chemTerm where gcr.gene_id = geneTerm.id and gcr.chem_id = chemTerm.id;

Date: 2026-04-01 10:27:16
Duration: 1m18s
Database: ctdprd51
User: load
Bind query: yes

select distinct geneTerm.acc_txt, geneTerm.nm, 'gene', chemTerm.acc_txt, chemTerm.nm, 'chemical', 'C' from pub1.GENE_CHEM_REFERENCE gcr, pub1.TERM geneTerm, pub1.TERM chemTerm where gcr.gene_id = geneTerm.id and gcr.chem_id = chemTerm.id;

Date: 2026-04-01 10:47:08
Duration: 1m17s
Database: ctdprd51
User: load
Bind query: yes

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Times Reported Time consuming queries #5

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COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

Date: 2026-04-01 06:07:17
Duration: 24s72ms

COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

Date: 2026-04-01 10:07:17
Duration: 24s55ms

COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

Date: 2026-04-01 18:07:17
Duration: 23s984ms

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Times Reported Time consuming queries #6

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select distinct geneTermFrom.acc_txt # 015, geneTermFrom.nm # 015, 'from gene' # 015, geneTermTo.acc_txt # 015, geneTermTo.nm # 015, 'to gene' # 015, 'C' from pub1.GENE_GENE gg # 015, pub1.TERM geneTermFrom # 015, pub1.TERM geneTermTo # 015 where gg.from_gene_id = geneTermFrom.id # 015 and gg.to_gene_id = geneTermTo.id # 015;

Date: 2026-04-01 10:29:58
Duration: 46s879ms
Bind query: yes

select distinct geneTermFrom.acc_txt # 015, geneTermFrom.nm # 015, 'from gene' # 015, geneTermTo.acc_txt # 015, geneTermTo.nm # 015, 'to gene' # 015, 'C' from pub1.GENE_GENE gg # 015, pub1.TERM geneTermFrom # 015, pub1.TERM geneTermTo # 015 where gg.from_gene_id = geneTermFrom.id # 015 and gg.to_gene_id = geneTermTo.id # 015;

Date: 2026-04-01 10:49:48
Duration: 46s673ms
Bind query: yes

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Times Reported Time consuming queries #7

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[ User: postgres - Total duration: 1m16s - Times executed: 4 ]

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[ Application: pg_dump - Total duration: 1m16s - Times executed: 4 ]

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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;

Date: 2026-04-01 10:00:21
Duration: 19s460ms
Database: ctdprd51
User: postgres
Application: pg_dump

COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;

Date: 2026-04-01 14:00:21
Duration: 19s89ms
Database: ctdprd51
User: postgres
Application: pg_dump

COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;

Date: 2026-04-01 06:00:20
Duration: 19s37ms
Database: ctdprd51
User: postgres
Application: pg_dump

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Times Reported Time consuming queries #8

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COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;

Date: 2026-04-01 10:07:33
Duration: 15s558ms

COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;

Date: 2026-04-01 06:07:33
Duration: 15s536ms

COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;

Date: 2026-04-01 18:07:32
Duration: 15s479ms

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Times Reported Time consuming queries #9

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COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;

Date: 2026-04-01 10:00:52
Duration: 14s661ms

COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;

Date: 2026-04-01 06:00:51
Duration: 14s636ms

COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;

Date: 2026-04-01 14:00:51
Duration: 14s551ms

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Times Reported Time consuming queries #10

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COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;

Date: 2026-04-01 10:01:06
Duration: 14s527ms

COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;

Date: 2026-04-01 14:01:06
Duration: 14s412ms

COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;

Date: 2026-04-01 06:01:05
Duration: 14s407ms

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Times Reported Time consuming queries #11

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[ User: pubeu - Total duration: 30s809ms - Times executed: 4 ]

[ User: qaeu - Total duration: 7s376ms - Times executed: 1 ]

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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;

Date: 2026-04-01 05:49:19
Duration: 8s140ms
Database: ctdprd51
User: pubeu
Bind query: yes

select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'LACTIC ACID')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006754' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases', 'decreases', 'affects')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 500;

Date: 2026-04-01 10:06:16
Duration: 8s19ms
Bind query: yes

select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;

Date: 2026-04-01 12:58:03
Duration: 7s719ms
Database: ctdprd51
User: pubeu
Bind query: yes

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