Times Reported Time consuming queries #1

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COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;

Date: 2026-06-13 18:45:03
Duration: 27m15s

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Times Reported Time consuming queries #2

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COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;

Date: 2026-06-13 19:30:47
Duration: 26m58s

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Times Reported Time consuming queries #3

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[ User: pubeu - Total duration: 17m23s - Times executed: 4 ]

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SELECT /* BatchDiseaseGeneAssnsDAO */ 'cardiovascular diseases' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2195410) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;

Date: 2026-06-13 01:55:29
Duration: 4m22s
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* BatchDiseaseGeneAssnsDAO */ 'cardiovascular diseases' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2195410) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;

Date: 2026-06-13 07:29:50
Duration: 4m22s
Bind query: yes

SELECT /* BatchDiseaseGeneAssnsDAO */ 'cardiovascular diseases' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2195410) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;

Date: 2026-06-13 06:21:16
Duration: 4m21s
Database: ctdprd51
User: pubeu
Bind query: yes

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Times Reported Time consuming queries #4

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[ User: pubeu - Total duration: 11m40s - Times executed: 3 ]

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SELECT /* BatchDiseaseGeneAssnsDAO */ 'cardiovascular diseases' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2195410) AND gdr.source_cd = 'I' GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, c.nm;

Date: 2026-06-13 18:23:22
Duration: 4m
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* BatchDiseaseGeneAssnsDAO */ 'cardiovascular diseases' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2195410) AND gdr.source_cd = 'I' GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, c.nm;

Date: 2026-06-13 07:38:45
Duration: 3m51s
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* BatchDiseaseGeneAssnsDAO */ 'cardiovascular diseases' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE d.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 2195410) AND gdr.source_cd = 'I' GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, c.nm;

Date: 2026-06-13 11:17:01
Duration: 3m48s
Database: ctdprd51
User: pubeu
Bind query: yes

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Times Reported Time consuming queries #5

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[ User: pubc - Total duration: 9m15s - Times executed: 1 ]

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[ Application: psql - Total duration: 9m15s - Times executed: 1 ]

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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();

Date: 2026-06-13 00:09:17
Duration: 9m15s
Database: ctdprd51
User: pubc
Application: psql

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Times Reported Time consuming queries #6

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COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;

Date: 2026-06-13 19:43:13
Duration: 6m49s

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Times Reported Time consuming queries #7

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COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;

Date: 2026-06-13 18:57:26
Duration: 6m46s

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Times Reported Time consuming queries #8

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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

Date: 2026-06-13 19:47:10
Duration: 1m50s

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Times Reported Time consuming queries #9

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COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;

Date: 2026-06-13 18:48:36
Duration: 1m42s

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Times Reported Time consuming queries #10

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COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;

Date: 2026-06-13 19:34:21
Duration: 1m41s

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Times Reported Time consuming queries #11

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COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;

Date: 2026-06-13 18:15:25
Duration: 1m21s

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Times Reported Time consuming queries #12

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COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;

Date: 2026-06-13 19:01:26
Duration: 1m18s

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Times Reported Time consuming queries #13

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[ User: pubeu - Total duration: 1m14s - Times executed: 2 ]

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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2195410') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;

Date: 2026-06-13 18:25:45
Duration: 38s357ms
Database: ctdprd51
User: pubeu
Bind query: yes

SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2195410') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;

Date: 2026-06-13 18:24:42
Duration: 36s622ms
Database: ctdprd51
User: pubeu
Bind query: yes

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Times Reported Time consuming queries #14

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COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;

Date: 2026-06-13 19:02:31
Duration: 1m4s

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Times Reported Time consuming queries #15

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COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;

Date: 2026-06-13 18:16:30
Duration: 1m4s

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Times Reported Time consuming queries #16

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COPY pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;

Date: 2026-06-13 19:44:43
Duration: 1m

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Times Reported Time consuming queries #17

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COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;

Date: 2026-06-13 18:59:58
Duration: 54s827ms

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Times Reported Time consuming queries #18

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COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;

Date: 2026-06-13 18:13:54
Duration: 54s702ms

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Times Reported Time consuming queries #19

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COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;

Date: 2026-06-13 18:50:00
Duration: 51s127ms

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Times Reported Time consuming queries #20

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COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;

Date: 2026-06-13 19:35:44
Duration: 50s137ms

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