pgBadger-
Global information
- Generated on Sun Jul 12 04:15:03 2026
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20260711
- Parsed 15,354 log entries in 2s
- Log start from 2026-07-11 00:00:01 to 2026-07-11 23:58:59
-
Overview
Global Stats
- 61 Number of unique normalized queries
- 62 Number of queries
- 1h48m55s Total query duration
- 2026-07-11 00:09:45 First query
- 2026-07-11 19:50:14 Last query
- 1 queries/s at 2026-07-11 18:10:31 Query peak
- 1h48m55s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 1h48m55s Execute total duration
- 1 Number of events
- 1 Number of unique normalized events
- 1 Max number of times the same event was reported
- 0 Number of cancellation
- 0 Total number of automatic vacuums
- 8 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 1,872 Total number of sessions
- 49 sessions at 2026-07-11 00:06:12 Session peak
- 40d2h58m21s Total duration of sessions
- 30m51s Average duration of sessions
- 0 Average queries per session
- 3s491ms Average queries duration per session
- 30m48s Average idle time per session
- 1,872 Total number of connections
- 9 connections/s at 2026-07-11 05:40:08 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 1 queries/s Query Peak
- 2026-07-11 18:10:31 Date
SELECT Traffic
Key values
- 1 queries/s Query Peak
- 2026-07-11 00:11:50 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2026-07-11 18:10:31 Date
Queries duration
Key values
- 1h48m55s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jul 11 00 3 0ms 9m44s 3m18s 0ms 5s17ms 9m51s 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 1 0ms 8s323ms 8s323ms 0ms 0ms 8s323ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 1 0ms 5s875ms 5s875ms 0ms 0ms 5s875ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 1 0ms 8s945ms 8s945ms 0ms 0ms 8s945ms 13 0 0ms 0ms 0ms 0ms 0ms 0ms 14 1 0ms 5s132ms 5s132ms 0ms 0ms 5s132ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 30 0ms 27m30s 1m37s 1m9s 2m15s 27m30s 19 25 0ms 28m14s 1m59s 2m15s 7m29s 28m14s 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jul 11 00 2 0 4m54s 0ms 0ms 9m44s 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 1 0 8s323ms 0ms 0ms 8s323ms 04 0 0 0ms 0ms 0ms 0ms 05 1 0 5s875ms 0ms 0ms 5s875ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 1 0 8s945ms 0ms 0ms 8s945ms 13 0 0 0ms 0ms 0ms 0ms 14 1 0 5s132ms 0ms 0ms 5s132ms 15 0 0 0ms 0ms 0ms 0ms 16 0 0 0ms 0ms 0ms 0ms 17 0 0 0ms 0ms 0ms 0ms 18 0 30 1m37s 1m3s 1m9s 27m30s 19 0 25 1m59s 1m4s 2m15s 28m14s 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jul 11 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Jul 11 00 0 1 1.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 1 1.00 0.00% 04 0 0 0.00 0.00% 05 0 1 1.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 1 1.00 0.00% 13 0 0 0.00 0.00% 14 0 1 1.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Day Hour Count Average / Second Jul 11 00 81 0.02/s 01 75 0.02/s 02 79 0.02/s 03 79 0.02/s 04 82 0.02/s 05 97 0.03/s 06 82 0.02/s 07 78 0.02/s 08 76 0.02/s 09 83 0.02/s 10 78 0.02/s 11 80 0.02/s 12 77 0.02/s 13 75 0.02/s 14 76 0.02/s 15 80 0.02/s 16 71 0.02/s 17 77 0.02/s 18 79 0.02/s 19 76 0.02/s 20 75 0.02/s 21 76 0.02/s 22 66 0.02/s 23 74 0.02/s Day Hour Count Average Duration Average idle time Jul 11 00 81 30m25s 30m17s 01 75 32m45s 32m45s 02 79 29m31s 29m31s 03 79 29m40s 29m40s 04 82 29m6s 29m6s 05 97 26m3s 26m3s 06 82 28m49s 28m49s 07 78 30m26s 30m26s 08 76 31m42s 31m42s 09 82 30m25s 30m25s 10 78 31m1s 31m1s 11 81 32m22s 32m22s 12 77 31m11s 31m11s 13 75 30m55s 30m55s 14 76 31m8s 31m8s 15 80 30m31s 30m31s 16 71 32m56s 32m56s 17 77 32m8s 32m8s 18 78 31m1s 30m24s 19 77 32m43s 32m4s 20 75 31m46s 31m46s 21 76 32m24s 32m24s 22 66 32m26s 32m26s 23 74 31m11s 31m11s -
Connections
Established Connections
Key values
- 9 connections Connection Peak
- 2026-07-11 05:40:08 Date
Connections per database
Key values
- ctdprd51 Main Database
- 1,872 connections Total
Connections per user
Key values
- pubeu Main User
- 1,872 connections Total
-
Sessions
Simultaneous sessions
Key values
- 49 sessions Session Peak
- 2026-07-11 00:06:12 Date
Histogram of session times
Key values
- 1,783 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 1,872 sessions Total
Sessions per user
Key values
- pubeu Main User
- 1,872 sessions Total
Sessions per host
Key values
- 10.12.5.53 Main Host
- 1,872 sessions Total
-
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 10,461 buffers Checkpoint Peak
- 2026-07-11 20:31:05 Date
- 1047.284 seconds Highest write time
- 0.002 seconds Sync time
Checkpoints Wal files
Key values
- 0 files Wal files usage Peak
- 2026-07-11 22:13:39 Date
Checkpoints distance
Key values
- 5.00 Mo Distance Peak
- 2026-07-11 00:14:07 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Jul 11 00 356 35.856s 0.003s 35.91s 01 218 22.015s 0.002s 22.024s 02 192 19.498s 0.002s 19.508s 03 134 13.657s 0.002s 13.666s 04 208 21.015s 0.002s 21.024s 05 118 12.005s 0.003s 12.014s 06 205 20.741s 0.002s 20.751s 07 184 18.629s 0.002s 18.637s 08 176 17.829s 0.002s 17.84s 09 236 23.842s 0.002s 23.851s 10 23 2.502s 0.002s 2.511s 11 82 8.396s 0.002s 8.405s 12 10 1.27s 0.002s 1.28s 13 43 4.482s 0.002s 4.492s 14 12 1.286s 0.001s 1.29s 15 200 20.278s 0.002s 20.287s 16 29 3.086s 0.002s 3.094s 17 7 0.789s 0.001s 0.794s 18 18 2.116s 0.002s 2.125s 19 10 1.086s 0.001s 1.09s 20 10,497 1,050.975s 0.002s 1,050.985s 21 23 2.387s 0.001s 2.392s 22 51 5.332s 0.002s 5.342s 23 102 10.394s 0.002s 10.404s Day Hour Added Removed Recycled Synced files Longest sync Average sync Jul 11 00 0 1 0 67 0.001s 0.002s 01 0 0 0 23 0.001s 0.002s 02 0 0 0 28 0.001s 0.002s 03 0 0 0 20 0.001s 0.002s 04 0 0 0 26 0.001s 0.002s 05 0 0 0 19 0.001s 0.002s 06 0 0 0 29 0.001s 0.002s 07 0 0 0 20 0.001s 0.002s 08 0 0 0 27 0.001s 0.002s 09 0 0 0 29 0.001s 0.002s 10 0 0 0 13 0.001s 0.002s 11 0 0 0 23 0.001s 0.002s 12 0 0 0 7 0.001s 0.002s 13 0 0 0 18 0.001s 0.002s 14 0 0 0 9 0.001s 0.001s 15 0 0 0 22 0.001s 0.002s 16 0 0 0 18 0.001s 0.002s 17 0 0 0 6 0.001s 0.001s 18 0 0 0 14 0.001s 0.002s 19 0 0 0 7 0.001s 0.001s 20 0 0 0 16 0.001s 0.002s 21 0 0 0 9 0.001s 0.001s 22 0 0 0 19 0.001s 0.002s 23 0 0 0 27 0.001s 0.002s Day Hour Count Avg time (sec) Jul 11 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Jul 11 00 1,307.50 kB 30,564.50 kB 01 158.00 kB 24,788.00 kB 02 164.00 kB 20,098.00 kB 03 40.50 kB 16,298.50 kB 04 165.50 kB 13,234.00 kB 05 39.00 kB 10,726.00 kB 06 259.00 kB 8,737.00 kB 07 52.00 kB 7,087.00 kB 08 208.00 kB 5,779.00 kB 09 636.00 kB 4,802.00 kB 10 57.00 kB 3,900.50 kB 11 191.00 kB 3,197.00 kB 12 25.50 kB 2,594.00 kB 13 50.50 kB 2,112.00 kB 14 51.00 kB 1,807.00 kB 15 572.00 kB 1,652.00 kB 16 44.50 kB 1,346.50 kB 17 27.00 kB 1,152.00 kB 18 26.00 kB 988.00 kB 19 25.00 kB 847.00 kB 20 22.00 kB 727.50 kB 21 24.00 kB 624.00 kB 22 47.00 kB 540.50 kB 23 198.00 kB 474.50 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Jul 11 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
- 0 sec Highest CPU-cost analyze
Table
Database - Date
Average Autovacuum Duration
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
Analyzes per table
Key values
- pubc.log_query (8) Main table analyzed (database ctdprd51)
- 8 analyzes Total
Vacuums per table
Key values
- unknown (0) Main table vacuumed on database
- 0 vacuums Total
Tuples removed per table
Key values
- unknown (0) Main table with removed tuples on database
- 0 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Jul 11 00 0 0 01 0 1 02 0 1 03 0 0 04 0 1 05 0 2 06 0 0 07 0 1 08 0 0 09 0 0 10 0 1 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 1 - 0 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 6 Total read queries
- 55 Total write queries
Queries by database
Key values
- unknown Main database
- 55 Requests
- 1h38m18s (unknown)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 85 Requests
User Request type Count Duration postgres Total 9 9m19s copy to 9 9m19s pubc Total 1 9m44s select 1 9m44s pubeu Total 17 4m34s select 17 4m34s unknown Total 85 1h45m5s copy to 82 1h44m12s others 1 7s226ms select 2 45s816ms Duration by user
Key values
- 1h45m5s (unknown) Main time consuming user
User Request type Count Duration postgres Total 9 9m19s copy to 9 9m19s pubc Total 1 9m44s select 1 9m44s pubeu Total 17 4m34s select 17 4m34s unknown Total 85 1h45m5s copy to 82 1h44m12s others 1 7s226ms select 2 45s816ms Queries by host
Key values
- unknown Main host
- 112 Requests
- 2h8m43s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 60 Requests
- 1h38m51s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2026-07-11 10:26:25 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 44 > 10000ms duration
Slowest individual queries
Rank Duration Query 1 28m14s COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-07-11 19:33:28 ]
2 27m30s COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-07-11 18:45:31 ]
3 9m44s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2026-07-11 00:09:45 - Database: ctdprd51 - User: pubc - Application: psql ]
4 7m2s COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2026-07-11 19:46:16 ]
5 6m56s COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2026-07-11 18:58:10 ]
6 1m54s COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-07-11 19:49:34 ]
7 1m44s COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;[ Date: 2026-07-11 19:37:07 ]
8 1m44s COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;[ Date: 2026-07-11 18:49:08 ]
9 1m23s COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;[ Date: 2026-07-11 19:02:48 ]
10 1m23s COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;[ Date: 2026-07-11 18:15:34 ]
11 1m5s COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;[ Date: 2026-07-11 18:16:41 ]
12 1m5s COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;[ Date: 2026-07-11 19:03:54 ]
13 57s636ms COPY pub1.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2026-07-11 18:59:37 ]
14 56s232ms COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-07-11 18:14:02 ]
15 55s934ms COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-07-11 19:01:15 ]
16 52s947ms COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;[ Date: 2026-07-11 19:38:34 ]
17 51s684ms COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;[ Date: 2026-07-11 18:50:34 ]
18 45s290ms COPY pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;[ Date: 2026-07-11 18:46:21 ]
19 45s262ms COPY pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;[ Date: 2026-07-11 19:34:18 ]
20 44s718ms COPY load.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not, create_tm) TO stdout;[ Date: 2026-07-11 18:12:19 ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 28m14s 1 28m14s 28m14s 28m14s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jul 11 19 1 28m14s 28m14s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 19:33:28 Duration: 28m14s
2 27m30s 1 27m30s 27m30s 27m30s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jul 11 18 1 27m30s 27m30s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 18:45:31 Duration: 27m30s
3 9m44s 1 9m44s 9m44s 9m44s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jul 11 00 1 9m44s 9m44s [ User: pubc - Total duration: 9m44s - Times executed: 1 ]
[ Application: psql - Total duration: 9m44s - Times executed: 1 ]
-
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-07-11 00:09:45 Duration: 9m44s Database: ctdprd51 User: pubc Application: psql
4 7m2s 1 7m2s 7m2s 7m2s copy pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jul 11 19 1 7m2s 7m2s -
COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-07-11 19:46:16 Duration: 7m2s
5 6m56s 1 6m56s 6m56s 6m56s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jul 11 18 1 6m56s 6m56s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-07-11 18:58:10 Duration: 6m56s
6 1m54s 1 1m54s 1m54s 1m54s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jul 11 19 1 1m54s 1m54s -
COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-07-11 19:49:34 Duration: 1m54s
7 1m44s 1 1m44s 1m44s 1m44s copy pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jul 11 19 1 1m44s 1m44s -
COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-07-11 19:37:07 Duration: 1m44s
8 1m44s 1 1m44s 1m44s 1m44s copy pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jul 11 18 1 1m44s 1m44s -
COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-07-11 18:49:08 Duration: 1m44s
9 1m23s 1 1m23s 1m23s 1m23s copy pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jul 11 19 1 1m23s 1m23s -
COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-07-11 19:02:48 Duration: 1m23s
10 1m23s 1 1m23s 1m23s 1m23s copy pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jul 11 18 1 1m23s 1m23s -
COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-07-11 18:15:34 Duration: 1m23s
11 1m5s 1 1m5s 1m5s 1m5s copy pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jul 11 18 1 1m5s 1m5s -
COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-07-11 18:16:41 Duration: 1m5s
12 1m5s 1 1m5s 1m5s 1m5s copy pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jul 11 19 1 1m5s 1m5s -
COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-07-11 19:03:54 Duration: 1m5s
13 57s636ms 1 57s636ms 57s636ms 57s636ms copy pub1.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jul 11 18 1 57s636ms 57s636ms -
COPY pub1.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-07-11 18:59:37 Duration: 57s636ms
14 56s232ms 1 56s232ms 56s232ms 56s232ms copy pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jul 11 18 1 56s232ms 56s232ms -
COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 18:14:02 Duration: 56s232ms
15 55s934ms 1 55s934ms 55s934ms 55s934ms copy pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jul 11 19 1 55s934ms 55s934ms -
COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 19:01:15 Duration: 55s934ms
16 52s947ms 1 52s947ms 52s947ms 52s947ms copy pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jul 11 19 1 52s947ms 52s947ms -
COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-07-11 19:38:34 Duration: 52s947ms
17 51s684ms 1 51s684ms 51s684ms 51s684ms copy pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jul 11 18 1 51s684ms 51s684ms -
COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-07-11 18:50:34 Duration: 51s684ms
18 45s290ms 1 45s290ms 45s290ms 45s290ms copy pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jul 11 18 1 45s290ms 45s290ms -
COPY pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;
Date: 2026-07-11 18:46:21 Duration: 45s290ms
19 45s262ms 1 45s262ms 45s262ms 45s262ms copy pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) to stdout;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jul 11 19 1 45s262ms 45s262ms -
COPY pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;
Date: 2026-07-11 19:34:18 Duration: 45s262ms
20 44s718ms 1 44s718ms 44s718ms 44s718ms copy load.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not, create_tm) to stdout;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jul 11 18 1 44s718ms 44s718ms -
COPY load.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not, create_tm) TO stdout;
Date: 2026-07-11 18:12:19 Duration: 44s718ms
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 2 10s149ms 5s17ms 5s132ms 5s74ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jul 11 00 1 5s17ms 5s17ms 14 1 5s132ms 5s132ms [ User: pubeu - Total duration: 10s149ms - Times executed: 2 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1377701') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1377701') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2026-07-11 14:39:43 Duration: 5s132ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1465981') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1465981') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2026-07-11 00:11:50 Duration: 5s17ms Database: ctdprd51 User: pubeu Bind query: yes
2 1 28m14s 28m14s 28m14s 28m14s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jul 11 19 1 28m14s 28m14s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 19:33:28 Duration: 28m14s
3 1 27m30s 27m30s 27m30s 27m30s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jul 11 18 1 27m30s 27m30s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 18:45:31 Duration: 27m30s
4 1 9m44s 9m44s 9m44s 9m44s select maint_query_logs_archive ();Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jul 11 00 1 9m44s 9m44s [ User: pubc - Total duration: 9m44s - Times executed: 1 ]
[ Application: psql - Total duration: 9m44s - Times executed: 1 ]
-
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-07-11 00:09:45 Duration: 9m44s Database: ctdprd51 User: pubc Application: psql
5 1 7m2s 7m2s 7m2s 7m2s copy pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jul 11 19 1 7m2s 7m2s -
COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-07-11 19:46:16 Duration: 7m2s
6 1 6m56s 6m56s 6m56s 6m56s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jul 11 18 1 6m56s 6m56s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-07-11 18:58:10 Duration: 6m56s
7 1 1m54s 1m54s 1m54s 1m54s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jul 11 19 1 1m54s 1m54s -
COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-07-11 19:49:34 Duration: 1m54s
8 1 1m44s 1m44s 1m44s 1m44s copy pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jul 11 19 1 1m44s 1m44s -
COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-07-11 19:37:07 Duration: 1m44s
9 1 1m44s 1m44s 1m44s 1m44s copy pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jul 11 18 1 1m44s 1m44s -
COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-07-11 18:49:08 Duration: 1m44s
10 1 1m23s 1m23s 1m23s 1m23s copy pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jul 11 19 1 1m23s 1m23s -
COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-07-11 19:02:48 Duration: 1m23s
11 1 1m23s 1m23s 1m23s 1m23s copy pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jul 11 18 1 1m23s 1m23s -
COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-07-11 18:15:34 Duration: 1m23s
12 1 1m5s 1m5s 1m5s 1m5s copy pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jul 11 18 1 1m5s 1m5s -
COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-07-11 18:16:41 Duration: 1m5s
13 1 1m5s 1m5s 1m5s 1m5s copy pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jul 11 19 1 1m5s 1m5s -
COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-07-11 19:03:54 Duration: 1m5s
14 1 57s636ms 57s636ms 57s636ms 57s636ms copy pub1.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jul 11 18 1 57s636ms 57s636ms -
COPY pub1.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-07-11 18:59:37 Duration: 57s636ms
15 1 56s232ms 56s232ms 56s232ms 56s232ms copy pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jul 11 18 1 56s232ms 56s232ms -
COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 18:14:02 Duration: 56s232ms
16 1 55s934ms 55s934ms 55s934ms 55s934ms copy pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jul 11 19 1 55s934ms 55s934ms -
COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 19:01:15 Duration: 55s934ms
17 1 52s947ms 52s947ms 52s947ms 52s947ms copy pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jul 11 19 1 52s947ms 52s947ms -
COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-07-11 19:38:34 Duration: 52s947ms
18 1 51s684ms 51s684ms 51s684ms 51s684ms copy pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jul 11 18 1 51s684ms 51s684ms -
COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-07-11 18:50:34 Duration: 51s684ms
19 1 45s290ms 45s290ms 45s290ms 45s290ms copy pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) to stdout;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jul 11 18 1 45s290ms 45s290ms -
COPY pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;
Date: 2026-07-11 18:46:21 Duration: 45s290ms
20 1 45s262ms 45s262ms 45s262ms 45s262ms copy pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) to stdout;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jul 11 19 1 45s262ms 45s262ms -
COPY pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;
Date: 2026-07-11 19:34:18 Duration: 45s262ms
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 28m14s 28m14s 28m14s 1 28m14s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jul 11 19 1 28m14s 28m14s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 19:33:28 Duration: 28m14s
2 27m30s 27m30s 27m30s 1 27m30s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jul 11 18 1 27m30s 27m30s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 18:45:31 Duration: 27m30s
3 9m44s 9m44s 9m44s 1 9m44s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jul 11 00 1 9m44s 9m44s [ User: pubc - Total duration: 9m44s - Times executed: 1 ]
[ Application: psql - Total duration: 9m44s - Times executed: 1 ]
-
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-07-11 00:09:45 Duration: 9m44s Database: ctdprd51 User: pubc Application: psql
4 7m2s 7m2s 7m2s 1 7m2s copy pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jul 11 19 1 7m2s 7m2s -
COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-07-11 19:46:16 Duration: 7m2s
5 6m56s 6m56s 6m56s 1 6m56s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jul 11 18 1 6m56s 6m56s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-07-11 18:58:10 Duration: 6m56s
6 1m54s 1m54s 1m54s 1 1m54s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jul 11 19 1 1m54s 1m54s -
COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-07-11 19:49:34 Duration: 1m54s
7 1m44s 1m44s 1m44s 1 1m44s copy pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jul 11 19 1 1m44s 1m44s -
COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-07-11 19:37:07 Duration: 1m44s
8 1m44s 1m44s 1m44s 1 1m44s copy pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jul 11 18 1 1m44s 1m44s -
COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-07-11 18:49:08 Duration: 1m44s
9 1m23s 1m23s 1m23s 1 1m23s copy pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jul 11 19 1 1m23s 1m23s -
COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-07-11 19:02:48 Duration: 1m23s
10 1m23s 1m23s 1m23s 1 1m23s copy pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jul 11 18 1 1m23s 1m23s -
COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-07-11 18:15:34 Duration: 1m23s
11 1m5s 1m5s 1m5s 1 1m5s copy pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jul 11 18 1 1m5s 1m5s -
COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-07-11 18:16:41 Duration: 1m5s
12 1m5s 1m5s 1m5s 1 1m5s copy pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jul 11 19 1 1m5s 1m5s -
COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-07-11 19:03:54 Duration: 1m5s
13 57s636ms 57s636ms 57s636ms 1 57s636ms copy pub1.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jul 11 18 1 57s636ms 57s636ms -
COPY pub1.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-07-11 18:59:37 Duration: 57s636ms
14 56s232ms 56s232ms 56s232ms 1 56s232ms copy pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jul 11 18 1 56s232ms 56s232ms -
COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 18:14:02 Duration: 56s232ms
15 55s934ms 55s934ms 55s934ms 1 55s934ms copy pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jul 11 19 1 55s934ms 55s934ms -
COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-07-11 19:01:15 Duration: 55s934ms
16 52s947ms 52s947ms 52s947ms 1 52s947ms copy pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jul 11 19 1 52s947ms 52s947ms -
COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-07-11 19:38:34 Duration: 52s947ms
17 51s684ms 51s684ms 51s684ms 1 51s684ms copy pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jul 11 18 1 51s684ms 51s684ms -
COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-07-11 18:50:34 Duration: 51s684ms
18 45s290ms 45s290ms 45s290ms 1 45s290ms copy pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jul 11 18 1 45s290ms 45s290ms -
COPY pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;
Date: 2026-07-11 18:46:21 Duration: 45s290ms
19 45s262ms 45s262ms 45s262ms 1 45s262ms copy pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) to stdout;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jul 11 19 1 45s262ms 45s262ms -
COPY pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;
Date: 2026-07-11 19:34:18 Duration: 45s262ms
20 44s718ms 44s718ms 44s718ms 1 44s718ms copy load.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not, create_tm) to stdout;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jul 11 18 1 44s718ms 44s718ms -
COPY load.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not, create_tm) TO stdout;
Date: 2026-07-11 18:12:19 Duration: 44s718ms
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
-
Events
Log levels
Key values
- 7,654 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 0 FATAL entries
- 0 ERROR entries
- 0 WARNING entries
- 1 EVENTLOG entries
Most Frequent Errors/Events
Key values
- 1 Max number of times the same event was reported
- 1 Total events found
Rank Times reported Error 1 1 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #1
Day Hour Count Jul 11 11 1